Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006250

Physical Location & Seq

Genomic Coordinates Reverse (-)

16442700 .. 16446668

Gene Structure 3969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G106600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCATCAAAGTCTACAAACAAATATTTCACAGAGAGAAACTGAAGTGAGAGAGGGGAGGGGTTTACCCAAAACCCAAATAATTGGTATAGCAGCAAAGATGGGTTCTTGGGTTTGCTTAACCAGCGGTGTTGGTAGCGTCACTGTCTCTGGTGCATTGCCAAGAAGGGCTCTTTCTGCTCTTCTACTACAAAATCCAATTTCACTCTTACCTTCTTATCAATTTCACCACAACAGAAGAAGAGTTTGTGCCTCTGCTTCTTCTGGTGCGAAGGAATTACAACAGCAACAGTATCTGAGGAGCCCAGACCTTGTGGCCTTGGAATATGCTGACCTTAATCTCACCGACAAAATTTCTGAGGAACTGGGTCATGTCAGAATCAGGCAACATGTCAACCCTCTAAGTTCCTCTCTCTCTGTGCCTGTGGAAGTACCTGATTGGAATCAAGTCTTCAGGGACCCAACATTGCCACTCATGGTGGATATTGGATGTGGTAGTGGCAGATTTCTCATATGGCTTGCAAAAAGAAATTTAGTTATGAGAAATTATTTGGGACTGGAAATACGGAAGAAACTGGTCAAGCGTGCTGAATTCTGGGTTAAGGACCTGGCTCTTAGTAATATATATTTCATGTTTGCTAATGCCACAACTTCCTTTCAACAACTAGTGTCTACATACCCTGGACCATTGATGCTTGTTTCAATCCTATGCCCAGATCCTTATTTCAAGAAAAGGCATCATAAGAGACGGGTTGTACAGAAGCCTTTAGTAGATTCAATTGTGAGCAATTTAATGCCCAGCGGCCAGGTGTTAATGCAGTCAGATGTACTTGAAGTGGCACTTGACATGAGAAATCAATTTGATTCTCAACCCCAGGTTCTGAAACACATCCATGAAATTGACTCGAGTGTGCTGTGTGACAGTGAGGGATGGGTGTTAAGCAATCCAATGGGGATAAGGACTGAGAGAGAAATTCATGCAGAATTTGAAGGCGCAAAAATTTACAGAAGGATCTACCAGAAGCAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_4

Protein Analysis

344

Amino Acids

38.9

Weight (kDa)

9.43

Isoelectric Point (pI)

55.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17660
fragaria_vesca	FvH4_7g08330
malus_domestica	MD02G1232000.v1.1
prunus_persica	Prupe.2G106600_v2.0.a1 Prupe.2G106600_v2.0.a1
pyrus_communis	pycom02g20030
rosa_chinensis	RchiOBHm_Chr1g0340401 RchiOBHm_Chr1g0340511 RchiOBHm_Chr1g0340671 RchiOBHm_Chr1g0340701
rosa_laevigata	RLG00000029036
rosa_multiflora	Rmu_sc0000566.1_g000055 Rmu_sc0009976.1_g000002
rosa_roxburghii	Rroxscaffold_4G00311200 Rroxscaffold_4G00311260 Rroxscaffold_4G00315920
rosa_rugosa	Rorug01G0162900.1 Rorug01G0164000.1
rosa_samantha	Rh1AG177700 Rh1BG145200 Rh1BG146600 Rh1CG164900 Rh1DG178700
rosa_wichuraiana	Rw1G014620 Rw1G014790 Rw1G014840 Rw1G014880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	13, 671
AciI	CCGC	2 cut(s)	126, 801
AclWI	GGATC	2 cut(s)	710, 1019
AcoI	YGGCCR	1 cut(s)	802
AcsI	RAATTY	6 cut(s)	351, 529, 590, 972, 983, 999
AcuI	CTGAAG	2 cut(s)	63, 436
AfaI	GTAC	3 cut(s)	432, 756, 828
AflIII	ACRYGT	1 cut(s)	388
AgsI	TTSAA	6 cut(s)	659, 702, 727, 777, 833, 989
AhlI	ACTAGT	1 cut(s)	664
AjnI	CCWGG	4 cut(s)	606, 679, 804, 873
Alw26I	GTCTC	2 cut(s)	151, 739
AlwI	GGATC	2 cut(s)	710, 1019
AlwNI	CAGNNNCTG	2 cut(s)	295, 880
Ama87I	CYCGRG	1 cut(s)	904
AoxI	GGCC	2 cut(s)	315, 802
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	6 cut(s)	351, 529, 590, 972, 983, 999
AspLEI	GCGC	1 cut(s)	995
AspS9I	GGNCC	3 cut(s)	457, 604, 683
AsuHPI	GGTGA	2 cut(s)	218, 334
AvaI	CYCGRG	1 cut(s)	904
AvaII	GGWCC	3 cut(s)	457, 604, 683
BanII	GRGCYC	2 cut(s)	172, 305
BbsI	GAAGAC	1 cut(s)	442
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	2 cut(s)	94, 924
BciT130I	CCWGG	4 cut(s)	608, 681, 806, 875
BcoDI	GTCTC	2 cut(s)	151, 739
BcuI	ACTAGT	1 cut(s)	664
BfaI	CTAG	1 cut(s)	665
BisI	GCNGC	2 cut(s)	93, 802
BlsI	GCNGC	2 cut(s)	94, 803
Bme1390I	CCNGG	4 cut(s)	608, 681, 806, 875
Bme18I	GGWCC	3 cut(s)	457, 604, 683
BmeT110I	CYCGRG	1 cut(s)	904
BmgT120I	GGNCC	3 cut(s)	457, 604, 683
BmiI	GGNNCC	3 cut(s)	302, 458, 459
BmrFI	CCNGG	4 cut(s)	608, 681, 806, 875
BmrI	ACTGGG	1 cut(s)	374
BmsI	GCATC	3 cut(s)	13, 681, 745
BmuI	ACTGGG	1 cut(s)	374
BpiI	GAAGAC	1 cut(s)	442
BsaBI	GATNNNNATC	1 cut(s)	441
BsaJI	CCNNGG	3 cut(s)	318, 679, 873
Bse1I	ACTGG	3 cut(s)	369, 561, 579
Bse3DI	GCAATG	2 cut(s)	155, 464
Bse8I	GATNNNNATC	1 cut(s)	441
BseBI	CCWGG	4 cut(s)	608, 681, 806, 875
BseDI	CCNNGG	3 cut(s)	318, 679, 873
BseGI	GGATG	3 cut(s)	494, 888, 935
BseJI	GATNNNNATC	1 cut(s)	441
BseMI	GCAATG	2 cut(s)	155, 464
BseMII	CTCAG	3 cut(s)	287, 348, 954
BseNI	ACTGG	3 cut(s)	369, 561, 579
BseRI	GAGGAG	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	104
BseYI	CCCAGC	1 cut(s)	797
BshFI	GGCC	2 cut(s)	317, 804
BsiHKCI	CYCGRG	1 cut(s)	904
BslFI	GGGAC	2 cut(s)	470, 567
BsmAI	GTCTC	2 cut(s)	151, 739
BsmBI	CGTCTC	1 cut(s)	739
BsmFI	GGGAC	2 cut(s)	470, 567
BsnI	GGCC	2 cut(s)	317, 804
BsoBI	CYCGRG	1 cut(s)	904
Bsp1286I	GDGCHC	2 cut(s)	172, 305
Bsp1407I	TGTACA	1 cut(s)	754
Bsp143I	GATC	2 cut(s)	715, 1011
BspACI	CCGC	2 cut(s)	126, 801
BspANI	GGCC	2 cut(s)	317, 804
BspCNI	CTCAG	3 cut(s)	288, 349, 955
BspLI	GGNNCC	3 cut(s)	302, 458, 459
BspPI	GGATC	2 cut(s)	710, 1019
BspQI	GCTCTTC	1 cut(s)	186
BsrDI	GCAATG	2 cut(s)	155, 464
BsrGI	TGTACA	1 cut(s)	754
BsrI	ACTGG	3 cut(s)	369, 561, 579
BssECI	CCNNGG	3 cut(s)	318, 679, 873
BssMI	GATC	2 cut(s)	715, 1011
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	4 cut(s)	608, 681, 806, 875
Bst4CI	ACNGT	3 cut(s)	145, 291, 923
Bst6I	CTCTTC	2 cut(s)	186, 235
BstAUI	TGTACA	1 cut(s)	754
BstC8I	GCNNGC	2 cut(s)	519, 585
BstDEI	CTNAG	5 cut(s)	296, 357, 401, 614, 963
BstF5I	GGATG	3 cut(s)	494, 888, 935
BstHHI	GCGC	1 cut(s)	995
BstKTI	GATC	2 cut(s)	718, 1014
BstMAI	GTCTC	2 cut(s)	151, 739
BstMBI	GATC	2 cut(s)	715, 1011
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 176
BstNI	CCWGG	4 cut(s)	608, 681, 806, 875
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	4 cut(s)	606, 679, 804, 873
BstV1I	GCAGC	1 cut(s)	104
BstV2I	GAAGAC	1 cut(s)	442
BstX2I	RGATCY	2 cut(s)	715, 1011
BstXI	CCANNNNNNTGG	1 cut(s)	83
BstYI	RGATCY	2 cut(s)	715, 1011
BsuRI	GGCC	2 cut(s)	317, 804
BtsCI	GGATG	3 cut(s)	494, 888, 935
BtsIMutI	CAGTG	2 cut(s)	141, 928
Cac8I	GCNNGC	2 cut(s)	519, 585
CaiI	CAGNNNCTG	2 cut(s)	295, 880
CfoI	GCGC	1 cut(s)	995
Cfr13I	GGNCC	3 cut(s)	457, 604, 683
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	3 cut(s)	431, 755, 827
CviAII	CATG	7 cut(s)	371, 389, 475, 631, 847, 893, 977
CviJI	RGCY	7 cut(s)	170, 303, 317, 517, 611, 763, 804
CviKI_1	RGCY	7 cut(s)	170, 303, 317, 517, 611, 763, 804
CviQI	GTAC	3 cut(s)	431, 755, 827
DdeI	CTNAG	5 cut(s)	296, 357, 401, 614, 963
DpnI	GATC	2 cut(s)	717, 1013
DpnII	GATC	2 cut(s)	715, 1011
EaeI	YGGCCR	1 cut(s)	802
Eam1104I	CTCTTC	2 cut(s)	186, 235
EarI	CTCTTC	2 cut(s)	186, 235
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	2 cut(s)	172, 305
Eco47I	GGWCC	3 cut(s)	457, 604, 683
Eco57I	CTGAAG	2 cut(s)	63, 436
Eco88I	CYCGRG	1 cut(s)	904
EcoO109I	RGGNCCY	2 cut(s)	457, 604
EcoRI	GAATTC	1 cut(s)	590
EcoRII	CCWGG	4 cut(s)	606, 679, 804, 873
EcoT14I	CCWWGG	1 cut(s)	318
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	172, 305
ErhI	CCWWGG	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	739
FaeI	CATG	7 cut(s)	374, 392, 478, 634, 850, 896, 980
FalI	AAGNNNNNCTT	2 cut(s)	825, 857
FaqI	GGGAC	2 cut(s)	470, 567
FatI	CATG	7 cut(s)	370, 388, 474, 630, 846, 892, 976
FauNDI	CATATG	1 cut(s)	512
FblI	GTMKAC	2 cut(s)	13, 671
Fnu4HI	GCNGC	2 cut(s)	93, 802
FokI	GGATG	3 cut(s)	501, 875, 942
FriOI	GRGCYC	2 cut(s)	172, 305
Fsp4HI	GCNGC	2 cut(s)	93, 802
FspBI	CTAG	1 cut(s)	665
GlaI	GCGC	1 cut(s)	994
GluI	GCNGC	2 cut(s)	93, 802
GsaI	CCCAGC	1 cut(s)	801
HaeIII	GGCC	2 cut(s)	317, 804
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	995
Hin1II	CATG	7 cut(s)	374, 392, 478, 634, 850, 896, 980
Hin6I	GCGC	1 cut(s)	993
HinP1I	GCGC	1 cut(s)	993
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	5 cut(s)	378, 442, 773, 863, 902
HphI	GGTGA	2 cut(s)	218, 334
Hpy166II	GTNNAC	4 cut(s)	14, 65, 394, 672
Hpy188I	TCNGA	5 cut(s)	297, 358, 377, 823, 882
Hpy188III	TCNNGA	1 cut(s)	727
Hpy8I	GTNNAC	4 cut(s)	14, 65, 394, 672
HpyAV	CCTTC	5 cut(s)	159, 222, 265, 983, 1002
HpyCH4III	ACNGT	3 cut(s)	145, 291, 923
HpyCH4V	TGCA	5 cut(s)	4, 155, 521, 817, 980
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 176
HpyF3I	CTNAG	5 cut(s)	296, 357, 401, 614, 963
Hsp92II	CATG	7 cut(s)	374, 392, 478, 634, 850, 896, 980
HspAI	GCGC	1 cut(s)	993
KflI	GGGWCCC	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	715, 1011
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	300
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	3 cut(s)	13, 681, 745
MaeI	CTAG	1 cut(s)	665
MaeIII	GTNAC	2 cut(s)	139, 917
MalI	GATC	2 cut(s)	717, 1013
MboI	GATC	2 cut(s)	715, 1011
MboII	GAAGA	6 cut(s)	173, 249, 252, 252, 442, 580
MfeI	CAATTG	1 cut(s)	777
MflI	RGATCY	2 cut(s)	715, 1011
MhlI	GDGCHC	2 cut(s)	172, 305
MlyI	GAGTC	1 cut(s)	896
MnlI	CCTC	8 cut(s)	46, 51, 262, 291, 352, 408, 418, 919
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	6 cut(s)	119, 336, 600, 791, 812, 938
MslI	CAYNNNNRTG	1 cut(s)	891
MspA1I	CMGCKG	2 cut(s)	126, 801
MspR9I	CCNGG	4 cut(s)	608, 681, 806, 875
MunI	CAATTG	1 cut(s)	777
MvaI	CCWGG	4 cut(s)	608, 681, 806, 875
MwoI	GCNNNNNNNGC	2 cut(s)	123, 176
NdeI	CATATG	1 cut(s)	512
NdeII	GATC	2 cut(s)	715, 1011
NlaIII	CATG	7 cut(s)	374, 392, 478, 634, 850, 896, 980
NlaIV	GGNNCC	3 cut(s)	302, 458, 459
NmuCI	GTSAC	2 cut(s)	139, 917
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	392
PaeR7I	CTCGAG	1 cut(s)	904
PciI	ACATGT	1 cut(s)	388
PciSI	GCTCTTC	1 cut(s)	186
PfeI	GAWTC	4 cut(s)	378, 442, 773, 863
PkrI	GCNGC	2 cut(s)	94, 803
PleI	GAGTC	1 cut(s)	896
PpsI	GAGTC	1 cut(s)	896
PpuMI	RGGWCCY	2 cut(s)	457, 604
PscI	ACATGT	1 cut(s)	388
Psp5II	RGGWCCY	2 cut(s)	457, 604
Psp6I	CCWGG	4 cut(s)	606, 679, 804, 873
PspFI	CCCAGC	1 cut(s)	797
PspGI	CCWGG	4 cut(s)	606, 679, 804, 873
PspN4I	GGNNCC	3 cut(s)	302, 458, 459
PspPI	GGNCC	3 cut(s)	457, 604, 683
PspPPI	RGGWCCY	2 cut(s)	457, 604
PspXI	VCTCGAGB	1 cut(s)	904
PstNI	CAGNNNCTG	2 cut(s)	295, 880
PsuI	RGATCY	2 cut(s)	715, 1011
RsaI	GTAC	3 cut(s)	432, 756, 828
RsaNI	GTAC	3 cut(s)	431, 755, 827
RseI	CAYNNNNRTG	1 cut(s)	891
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	6 cut(s)	119, 336, 600, 791, 812, 938
SatI	GCNGC	2 cut(s)	93, 802
Sau3AI	GATC	2 cut(s)	715, 1011
Sau96I	GGNCC	3 cut(s)	457, 604, 683
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	4 cut(s)	608, 681, 806, 875
SduI	GDGCHC	2 cut(s)	172, 305
SetI	ASST	7 cut(s)	214, 312, 336, 436, 609, 810, 879
SfaNI	GCATC	3 cut(s)	13, 681, 745
Sfr274I	CTCGAG	1 cut(s)	904
SinI	GGWCC	3 cut(s)	457, 604, 683
SlaI	CTCGAG	1 cut(s)	904
SmiMI	CAYNNNNRTG	1 cut(s)	891
SmlI	CTYRAG	1 cut(s)	904
SmoI	CTYRAG	1 cut(s)	904
SpeI	ACTAGT	1 cut(s)	664
SsiI	CCGC	2 cut(s)	126, 801
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	1 cut(s)	665
StyD4I	CCNGG	4 cut(s)	606, 679, 804, 873
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	3 cut(s)	145, 291, 923
TaqI	TCGA	1 cut(s)	905
TatI	WGTACW	2 cut(s)	754, 826
TauI	GCSGC	1 cut(s)	804
TfiI	GAWTC	4 cut(s)	378, 442, 773, 863
Tru1I	TTAA	6 cut(s)	119, 336, 600, 791, 812, 938
Tru9I	TTAA	6 cut(s)	119, 336, 600, 791, 812, 938
TscAI	CASTG	2 cut(s)	148, 928
TseFI	GTSAC	2 cut(s)	139, 917
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	2 cut(s)	139, 917
TspDTI	ATGAA	3 cut(s)	619, 909, 965
TspGWI	ACGGA	1 cut(s)	580
TspRI	CASTG	2 cut(s)	148, 928
VpaK11BI	GGWCC	3 cut(s)	457, 604, 683
XapI	RAATTY	6 cut(s)	351, 529, 590, 972, 983, 999
XceI	RCATGY	1 cut(s)	392
XhoI	CTCGAG	1 cut(s)	904
XmiI	GTMKAC	2 cut(s)	13, 671
XspI	CTAG	1 cut(s)	665
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.