Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0006250

Physical Location & Seq

Genomic Coordinates Forward (+)

32670290 .. 32673206

Gene Structure 2917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G014620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGTTCTTGCGTCTGCTTACGTCAGCACTGCTGCTACGGTGGTTTGGGCGGTGCATTTCAAAGAAGGGGTCTTTCTAGTCTGTTCCGAAAAGGGGTTGTTGCCCCAGGTTTAACGGCGCCGTTTTATCAGTATCATAGGAACCGAAGAAGAGTGGAGGCCTGTGTTTCTACTGGGTTTAAGGAACTAGAGCTGAGGAGCCCGGACCTTGTGGCCTTGGAATATGCTGATCTTAATCTCACCCACAATGTTTCCCAGGAACTGGGTCACGTCAGAATTAGGCAACATGTGAACCCAACCCTCTTAGCTCTTCTTTATCTGTTCCTGTGGAAGTGCCTGATTGGGATCAAGTGTTCAGGGACCCAACATTGCCGCTCATGGTGGACATTGGAAGTGGTAGTGGTAGATTTCTCATGTGGCTGGCGAAAAGAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_4

Protein Analysis

145

Amino Acids

16.5

Weight (kDa)

9.21

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17660
fragaria_vesca	FvH4_7g08330
malus_domestica	MD02G1232000.v1.1
prunus_persica	Prupe.2G106600_v2.0.a1 Prupe.2G106600_v2.0.a1
pyrus_communis	pycom02g20030
rosa_chinensis	RchiOBHm_Chr1g0340401 RchiOBHm_Chr1g0340511 RchiOBHm_Chr1g0340671 RchiOBHm_Chr1g0340701
rosa_laevigata	RLG00000029036
rosa_multiflora	Rmu_sc0000566.1_g000055 Rmu_sc0009976.1_g000002
rosa_roxburghii	Rroxscaffold_4G00311200 Rroxscaffold_4G00311260 Rroxscaffold_4G00315920
rosa_rugosa	Rorug01G0162900.1 Rorug01G0164000.1
rosa_samantha	Rh1AG177700 Rh1BG145200 Rh1BG146600 Rh1CG164900 Rh1DG178700
rosa_wichuraiana	Rw1G014620 Rw1G014790 Rw1G014840 Rw1G014880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	118
AccB7I	CCANNNNNTGG	1 cut(s)	262
AccBSI	CCGCTC	1 cut(s)	375
AciI	CCGC	2 cut(s)	51, 373
AclWI	GGATC	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	94, 262
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	1 cut(s)	62
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	2 cut(s)	106, 255
AloI	GAACNNNNNNTCC	2 cut(s)	337, 369
AluBI	AGCT	2 cut(s)	193, 308
AluI	AGCT	2 cut(s)	193, 308
AlwI	GGATC	1 cut(s)	353
AlwNI	CAGNNNCTG	1 cut(s)	262
AoxI	GGCC	2 cut(s)	159, 213
ApeKI	GCWGC	1 cut(s)	33
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	2 cut(s)	205, 360
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	232
AvaII	GGWCC	2 cut(s)	205, 360
BanI	GGYRCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	203
BbvCI	CCTCAGC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	20
BceAI	ACGGC	2 cut(s)	106, 132
BciT130I	CCWGG	2 cut(s)	108, 257
BcnI	CCSGG	1 cut(s)	203
BfaI	CTAG	2 cut(s)	78, 188
BfoI	RGCGCY	1 cut(s)	122
BisI	GCNGC	2 cut(s)	34, 373
BlsI	GCNGC	2 cut(s)	35, 374
Bme1390I	CCNGG	3 cut(s)	108, 203, 257
Bme18I	GGWCC	2 cut(s)	205, 360
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	2 cut(s)	205, 360
BmiI	GGNNCC	5 cut(s)	120, 143, 200, 361, 362
BmrFI	CCNGG	3 cut(s)	108, 203, 257
BmrI	ACTGGG	2 cut(s)	183, 272
BmuI	ACTGGG	2 cut(s)	183, 272
Bpu10I	CCTNAGC	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	203
BsaBI	GATNNNNATC	2 cut(s)	234, 344
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	106, 216, 255
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 262
Bse1I	ACTGG	2 cut(s)	178, 267
Bse3DI	GCAATG	1 cut(s)	367
Bse8I	GATNNNNATC	2 cut(s)	234, 344
BseBI	CCWGG	2 cut(s)	108, 257
BseDI	CCNNGG	3 cut(s)	106, 216, 255
BseJI	GATNNNNATC	2 cut(s)	234, 344
BseLI	CCNNNNNNNGG	2 cut(s)	94, 262
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	178, 267
BseRI	GAGGAG	1 cut(s)	211
BseXI	GCAGC	1 cut(s)	20
BshFI	GGCC	2 cut(s)	161, 215
BshNI	GGYRCC	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	2 cut(s)	94, 262
BsmFI	GGGAC	1 cut(s)	373
BsnI	GGCC	2 cut(s)	161, 215
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	2 cut(s)	229, 345
BspACI	CCGC	2 cut(s)	51, 373
BspANI	GGCC	2 cut(s)	161, 215
BspCNI	CTCAG	1 cut(s)	186
BspLI	GGNNCC	5 cut(s)	120, 143, 200, 361, 362
BspPI	GGATC	1 cut(s)	353
BspQI	GCTCTTC	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	118
BsrBI	CCGCTC	1 cut(s)	375
BsrDI	GCAATG	1 cut(s)	367
BsrI	ACTGG	2 cut(s)	178, 267
BssECI	CCNNGG	3 cut(s)	106, 216, 255
BssMI	GATC	2 cut(s)	229, 345
BssNI	GRCGYC	1 cut(s)	119
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	108, 257
Bst4CI	ACNGT	1 cut(s)	41
Bst6I	CTCTTC	2 cut(s)	145, 315
BstACI	GRCGYC	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	3 cut(s)	194, 304, 435
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	2 cut(s)	232, 348
BstMBI	GATC	2 cut(s)	229, 345
BstNI	CCWGG	2 cut(s)	108, 257
BstNSI	RCATGY	1 cut(s)	290
BstSCI	CCNGG	3 cut(s)	106, 201, 255
BstV1I	GCAGC	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	161, 215
BtrI	CACGTC	1 cut(s)	271
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	422
CaiI	CAGNNNCTG	1 cut(s)	262
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	205, 360
CviAII	CATG	3 cut(s)	287, 378, 414
CviJI	RGCY	6 cut(s)	161, 193, 201, 215, 308, 420
CviKI_1	RGCY	6 cut(s)	161, 193, 201, 215, 308, 420
DdeI	CTNAG	3 cut(s)	194, 304, 435
DinI	GGCGCC	1 cut(s)	120
DpnI	GATC	2 cut(s)	231, 347
DpnII	GATC	2 cut(s)	229, 345
Eam1104I	CTCTTC	2 cut(s)	145, 315
EarI	CTCTTC	2 cut(s)	145, 315
Eco130I	CCWWGG	1 cut(s)	216
Eco147I	AGGCCT	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	203
Eco47I	GGWCC	2 cut(s)	205, 360
EcoO109I	RGGNCCY	1 cut(s)	360
EcoRII	CCWGG	2 cut(s)	106, 255
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	203
EgeI	GGCGCC	1 cut(s)	120
EheI	GGCGCC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	3 cut(s)	290, 381, 417
FaiI	YATR	5 cut(s)	138, 225, 288, 379, 415
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	3 cut(s)	286, 377, 413
Fnu4HI	GCNGC	2 cut(s)	34, 373
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	2 cut(s)	34, 373
FspBI	CTAG	2 cut(s)	78, 188
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	2 cut(s)	34, 373
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	161, 215
HapII	CCGG	1 cut(s)	203
HhaI	GCGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	3 cut(s)	290, 381, 417
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	292, 384
Hpy188I	TCNGA	2 cut(s)	89, 275
Hpy8I	GTNNAC	2 cut(s)	292, 384
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4IV	ACGT	2 cut(s)	22, 270
HpyCH4V	TGCA	1 cut(s)	56
HpyF3I	CTNAG	3 cut(s)	194, 304, 435
HpySE526I	ACGT	2 cut(s)	22, 270
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	3 cut(s)	290, 381, 417
HspAI	GCGC	1 cut(s)	119
KasI	GGCGCC	1 cut(s)	118
KflI	GGGWCCC	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	229, 345
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	198
Lsp1109I	GCAGC	1 cut(s)	20
MaeI	CTAG	2 cut(s)	78, 188
MaeII	ACGT	2 cut(s)	22, 270
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	2 cut(s)	231, 347
MbiI	CCGCTC	1 cut(s)	375
MboI	GATC	2 cut(s)	229, 345
MboII	GAAGA	3 cut(s)	159, 162, 302
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	1 cut(s)	276
Mly113I	GGCGCC	1 cut(s)	119
MnlI	CCTC	3 cut(s)	151, 189, 311
MseI	TTAA	3 cut(s)	113, 180, 234
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	3 cut(s)	108, 203, 257
MvaI	CCWGG	2 cut(s)	108, 257
NarI	GGCGCC	1 cut(s)	119
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	2 cut(s)	229, 345
NlaIII	CATG	3 cut(s)	290, 381, 417
NlaIV	GGNNCC	5 cut(s)	120, 143, 200, 361, 362
NmuCI	GTSAC	1 cut(s)	266
NspI	RCATGY	1 cut(s)	290
PceI	AGGCCT	1 cut(s)	161
PciI	ACATGT	1 cut(s)	286
PciSI	GCTCTTC	1 cut(s)	315
PflMI	CCANNNNNTGG	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	35, 374
PluTI	GGCGCC	1 cut(s)	122
PpuMI	RGGWCCY	1 cut(s)	360
PscI	ACATGT	1 cut(s)	286
Psp5II	RGGWCCY	1 cut(s)	360
Psp6I	CCWGG	2 cut(s)	106, 255
PspGI	CCWGG	2 cut(s)	106, 255
PspN4I	GGNNCC	5 cut(s)	120, 143, 200, 361, 362
PspPI	GGNCC	2 cut(s)	205, 360
PspPPI	RGGWCCY	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	262
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	3 cut(s)	113, 180, 234
SatI	GCNGC	2 cut(s)	34, 373
Sau3AI	GATC	2 cut(s)	229, 345
Sau96I	GGNCC	2 cut(s)	205, 360
ScrFI	CCNGG	3 cut(s)	108, 203, 257
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	6 cut(s)	25, 112, 195, 210, 273, 310
SfoI	GGCGCC	1 cut(s)	120
SinI	GGWCC	2 cut(s)	205, 360
Sse9I	AATT	1 cut(s)	276
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	2 cut(s)	51, 373
SspDI	GGCGCC	1 cut(s)	118
SspMI	CTAG	2 cut(s)	78, 188
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	3 cut(s)	106, 201, 255
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	41
TaiI	ACGT	2 cut(s)	25, 273
TasI	AATT	1 cut(s)	276
TauI	GCSGC	1 cut(s)	375
Tru1I	TTAA	3 cut(s)	113, 180, 234
Tru9I	TTAA	3 cut(s)	113, 180, 234
TscAI	CASTG	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	1 cut(s)	33
Tsp45I	GTSAC	1 cut(s)	266
TspRI	CASTG	1 cut(s)	35
Van91I	CCANNNNNTGG	1 cut(s)	262
VpaK11BI	GGWCC	2 cut(s)	205, 360
XceI	RCATGY	1 cut(s)	290
XspI	CTAG	2 cut(s)	78, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.