Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006250

Physical Location & Seq

Genomic Coordinates Reverse (-)

31761868 .. 31767519

Gene Structure 5652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029036

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGGTTCTTGCGTCTGCTTACGTCAGCACTACTGCTACGGTGGTTTGGGCGGTGCATTTCAAAGAAGGGGTCTTTCTAGTCTGTTTCGAAAAGGGGTTGTTGCGCCAGGTTTAACGTCGCCGTTTTATCAGTATCACAGGAACAGAAGAAGAGTGGAGGCCTGTGTTTCTACTGGGTTTAAGGAACAAGAGCTGAGGAGCCCGGATCTTGTGGCCTTGGAATATGCTGATCTTAATCTCACCCACAATGTTTCCCCGGAACTGGGTCACGTCAGAATTAGGCAACATCTTGTCAAACGTGCTGATGTCTGGGTTAAAGAGCTGGGTCTTAGTAATATACATTTCATGTATGCAAATGCCAGTACTTCATTTAATCAACTGGTGTCTACCTACCCTGGACCACTGATGCTTGTTTCAATCCTGCTCTATTTCTCACAAAAACAAACTAAACCTCAAACTCATGCTTGTAAAAGTGCATGCCTTTTAGGTGATCTCCTTCAAAGTTTCAATGATTTTGGTTTCTCATCCAATAAGGGTGTGTTTATACAGTCTGATGTACTTGACGTCGCACTTGAGATGAGAAACCAATTTGATTCTCTGCCCCATGTTCTGAAGCACATAGATGAAATCGAATCCAGCGTGCTGTGTGACAGTGAGGGATGGTTGTTGAGCAATCCAATGGGAAAAAGGACGGAAAGAGAAATTCATGCTGAATTTGAAGGGGCAAAAATTTACAGGAGAGTGTACCAGAAGCAAGTACAGAAGGCTCTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_4

Protein Analysis

259

Amino Acids

29.19

Weight (kDa)

8.93

Isoelectric Point (pI)

68.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17660
fragaria_vesca	FvH4_7g08330
malus_domestica	MD02G1232000.v1.1
prunus_persica	Prupe.2G106600_v2.0.a1 Prupe.2G106600_v2.0.a1
pyrus_communis	pycom02g20030
rosa_chinensis	RchiOBHm_Chr1g0340401 RchiOBHm_Chr1g0340511 RchiOBHm_Chr1g0340671 RchiOBHm_Chr1g0340701
rosa_laevigata	RLG00000029036
rosa_multiflora	Rmu_sc0000566.1_g000055 Rmu_sc0009976.1_g000002
rosa_roxburghii	Rroxscaffold_4G00311200 Rroxscaffold_4G00311260 Rroxscaffold_4G00315920
rosa_rugosa	Rorug01G0162900.1 Rorug01G0164000.1
rosa_samantha	Rh1AG177700 Rh1BG145200 Rh1BG146600 Rh1CG164900 Rh1DG178700
rosa_wichuraiana	Rw1G014620 Rw1G014790 Rw1G014840 Rw1G014880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	567
AccI	GTMKAC	1 cut(s)	386
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	213
AcsI	RAATTY	3 cut(s)	702, 713, 729
AcuI	CTGAAG	1 cut(s)	632
AcyI	GRCGYC	1 cut(s)	564
AfaI	GTAC	4 cut(s)	364, 558, 746, 759
AfiI	CCNNNNNNNGG	2 cut(s)	262, 263
AgsI	TTSAA	5 cut(s)	62, 417, 500, 508, 719
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	2 cut(s)	106, 394
AluBI	AGCT	2 cut(s)	193, 322
AluI	AGCT	2 cut(s)	193, 322
AlwI	GGATC	1 cut(s)	213
AoxI	GGCC	2 cut(s)	159, 213
ApoI	RAATTY	3 cut(s)	702, 713, 729
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	398
AsuC2I	CCSGG	2 cut(s)	203, 257
AsuHPI	GGTGA	2 cut(s)	232, 500
AsuII	TTCGAA	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	203
BbvCI	CCTCAGC	1 cut(s)	194
BccI	CCATC	1 cut(s)	654
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	2 cut(s)	108, 396
BcnI	CCSGG	2 cut(s)	203, 257
BfaI	CTAG	1 cut(s)	78
BmcAI	AGTACT	1 cut(s)	364
Bme1390I	CCNGG	4 cut(s)	108, 203, 257, 396
Bme18I	GGWCC	1 cut(s)	398
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	4 cut(s)	108, 203, 257, 396
BmrI	ACTGGG	2 cut(s)	183, 272
BmsI	GCATC	1 cut(s)	396
BmuI	ACTGGG	2 cut(s)	183, 272
Bpu10I	CCTNAGC	1 cut(s)	194
Bpu14I	TTCGAA	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	593
BpuMI	CCSGG	2 cut(s)	203, 257
BsaBI	GATNNNNATC	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	564
BsaJI	CCNNGG	3 cut(s)	216, 255, 394
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 263
Bse1I	ACTGG	4 cut(s)	178, 267, 360, 384
Bse8I	GATNNNNATC	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	108, 396
BseDI	CCNNGG	3 cut(s)	216, 255, 394
BseGI	GGATG	2 cut(s)	524, 665
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	2 cut(s)	262, 263
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	4 cut(s)	178, 267, 360, 384
BseRI	GAGGAG	1 cut(s)	211
BseYI	CCCAGC	1 cut(s)	322
BshFI	GGCC	2 cut(s)	161, 215
BsiSI	CCGG	2 cut(s)	203, 257
BslI	CCNNNNNNNGG	2 cut(s)	262, 263
BsnI	GGCC	2 cut(s)	161, 215
Bsp119I	TTCGAA	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	3 cut(s)	205, 229, 490
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	2 cut(s)	161, 215
BspCNI	CTCAG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	200
BspPI	GGATC	1 cut(s)	213
BspT104I	TTCGAA	1 cut(s)	88
BsrI	ACTGG	4 cut(s)	178, 267, 360, 384
BssECI	CCNNGG	3 cut(s)	216, 255, 394
BssMI	GATC	3 cut(s)	205, 229, 490
BssNI	GRCGYC	1 cut(s)	564
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	108, 396
Bst4CI	ACNGT	3 cut(s)	41, 549, 653
Bst6I	CTCTTC	1 cut(s)	145
BstACI	GRCGYC	1 cut(s)	564
BstBI	TTCGAA	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	478, 641
BstDEI	CTNAG	2 cut(s)	194, 329
BstF5I	GGATG	2 cut(s)	524, 665
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	3 cut(s)	208, 232, 493
BstMBI	GATC	3 cut(s)	205, 229, 490
BstNI	CCWGG	2 cut(s)	108, 396
BstNSI	RCATGY	1 cut(s)	480
BstSCI	CCNGG	4 cut(s)	106, 201, 255, 394
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	161, 215
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	524, 665
BtsIMutI	CAGTG	2 cut(s)	401, 658
Cac8I	GCNNGC	2 cut(s)	478, 641
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	398
Csp6I	GTAC	4 cut(s)	363, 557, 745, 758
CviAII	CATG	5 cut(s)	346, 461, 477, 605, 707
CviJI	RGCY	6 cut(s)	161, 193, 201, 215, 322, 767
CviKI_1	RGCY	6 cut(s)	161, 193, 201, 215, 322, 767
CviQI	GTAC	4 cut(s)	363, 557, 745, 758
DdeI	CTNAG	2 cut(s)	194, 329
DpnI	GATC	3 cut(s)	207, 231, 492
DpnII	GATC	3 cut(s)	205, 229, 490
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	216
Eco147I	AGGCCT	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	632
EcoRII	CCWGG	2 cut(s)	106, 394
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	5 cut(s)	349, 464, 480, 608, 710
FatI	CATG	5 cut(s)	345, 460, 476, 604, 706
FblI	GTMKAC	1 cut(s)	386
FokI	GGATG	2 cut(s)	511, 672
FriOI	GRGCYC	1 cut(s)	203
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	105
GsaI	CCCAGC	1 cut(s)	326
HaeIII	GGCC	2 cut(s)	161, 215
HapII	CCGG	2 cut(s)	203, 257
HhaI	GCGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	564
Hin1II	CATG	5 cut(s)	349, 464, 480, 608, 710
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HinfI	GANTC	2 cut(s)	593, 632
HpaII	CCGG	2 cut(s)	203, 257
HphI	GGTGA	2 cut(s)	232, 500
Hpy166II	GTNNAC	2 cut(s)	387, 745
Hpy188I	TCNGA	3 cut(s)	275, 553, 612
Hpy8I	GTNNAC	2 cut(s)	387, 745
Hpy99I	CGWCG	2 cut(s)	121, 569
HpyAV	CCTTC	4 cut(s)	60, 506, 713, 757
HpyCH4III	ACNGT	3 cut(s)	41, 549, 653
HpyCH4IV	ACGT	5 cut(s)	22, 116, 270, 298, 564
HpyCH4V	TGCA	3 cut(s)	56, 353, 476
HpyF3I	CTNAG	2 cut(s)	194, 329
HpySE526I	ACGT	5 cut(s)	22, 116, 270, 298, 564
Hsp92I	GRCGYC	1 cut(s)	564
Hsp92II	CATG	5 cut(s)	349, 464, 480, 608, 710
HspAI	GCGC	1 cut(s)	104
Kzo9I	GATC	3 cut(s)	205, 229, 490
LmnI	GCTCC	1 cut(s)	198
LweI	GCATC	1 cut(s)	396
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	5 cut(s)	22, 116, 270, 298, 564
MaeIII	GTNAC	2 cut(s)	266, 647
MalI	GATC	3 cut(s)	207, 231, 492
MboI	GATC	3 cut(s)	205, 229, 490
MboII	GAAGA	2 cut(s)	159, 162
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	5 cut(s)	276, 587, 702, 713, 729
MnlI	CCTC	4 cut(s)	151, 189, 462, 649
MseI	TTAA	5 cut(s)	113, 180, 234, 315, 372
MslI	CAYNNNNRTG	1 cut(s)	621
MspI	CCGG	2 cut(s)	203, 257
MspR9I	CCNGG	4 cut(s)	108, 203, 257, 396
MvaI	CCWGG	2 cut(s)	108, 396
NciI	CCSGG	2 cut(s)	203, 257
NdeII	GATC	3 cut(s)	205, 229, 490
NlaIII	CATG	5 cut(s)	349, 464, 480, 608, 710
NlaIV	GGNNCC	1 cut(s)	200
NmuCI	GTSAC	2 cut(s)	266, 647
NspI	RCATGY	1 cut(s)	480
NspV	TTCGAA	1 cut(s)	88
PaeI	GCATGC	1 cut(s)	480
PceI	AGGCCT	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	636
PfeI	GAWTC	2 cut(s)	593, 632
Psp6I	CCWGG	2 cut(s)	106, 394
PspFI	CCCAGC	1 cut(s)	322
PspGI	CCWGG	2 cut(s)	106, 394
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	4 cut(s)	364, 558, 746, 759
RsaNI	GTAC	4 cut(s)	363, 557, 745, 758
RseI	CAYNNNNRTG	1 cut(s)	621
SaqAI	TTAA	5 cut(s)	113, 180, 234, 315, 372
Sau3AI	GATC	3 cut(s)	205, 229, 490
Sau96I	GGNCC	1 cut(s)	398
ScaI	AGTACT	1 cut(s)	364
ScrFI	CCNGG	4 cut(s)	108, 203, 257, 396
SduI	GDGCHC	1 cut(s)	203
SfaNI	GCATC	1 cut(s)	396
SfuI	TTCGAA	1 cut(s)	88
SinI	GGWCC	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	621
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
SphI	GCATGC	1 cut(s)	480
Sse9I	AATT	5 cut(s)	276, 587, 702, 713, 729
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	1 cut(s)	78
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	4 cut(s)	106, 201, 255, 394
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	3 cut(s)	41, 549, 653
TaiI	ACGT	5 cut(s)	25, 119, 273, 301, 567
TaqI	TCGA	2 cut(s)	88, 630
TasI	AATT	5 cut(s)	276, 587, 702, 713, 729
TatI	WGTACW	3 cut(s)	362, 556, 757
TfiI	GAWTC	2 cut(s)	593, 632
Tru1I	TTAA	5 cut(s)	113, 180, 234, 315, 372
Tru9I	TTAA	5 cut(s)	113, 180, 234, 315, 372
TscAI	CASTG	2 cut(s)	408, 658
TseFI	GTSAC	2 cut(s)	266, 647
Tsp45I	GTSAC	2 cut(s)	266, 647
TspDTI	ATGAA	4 cut(s)	334, 357, 639, 695
TspGWI	ACGGA	1 cut(s)	707
TspRI	CASTG	2 cut(s)	408, 658
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	3 cut(s)	702, 713, 729
XceI	RCATGY	1 cut(s)	480
XmiI	GTMKAC	1 cut(s)	386
XspI	CTAG	1 cut(s)	78
ZraI	GACGTC	1 cut(s)	565
ZrmI	AGTACT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.