Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006250

Physical Location & Seq

Genomic Coordinates Forward (+)

18162548 .. 18166295

Gene Structure 3748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g20030.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCAGAGCAGCAAAATGCTGGGTTCTTGCGTAGGCGGTGGCACACTCAGTGCTGCATTACCAAGAAGAGCTCTGAAACTGCAACGGCTTATTTCTCCTACTTCACCACTGTTACCTTCTCACCAATTTCACCCCATCAGCAGAAGATTGAGCGCCTCTGCTTCTGCTGGCGCACAGCAGCAGCAACAGCAACATCAACACCAGCAGCAGAGCCCCAACCTAGTGGCCTTGGAATATGCCGACCTTAATCTCAACCCCACAATCTCTGAGGAACTGGGTCTGGGTCATGGCCGAATCAGGCAACATGTCAACCCTCTGAAAACCTCTCTCTCTGCGCCTGTGGAAGTACCTGATTGGAATCGAGTCTTCAGGGATCCAACATTGCCACTCATGGTGGATATTGGAAGTGGTAGTGGCAGATTTCTCTTATGGCTCGCAAAAAGGAATTTAGTTGTGAGAAATTATCTGGGACTGGAAATACGGAAGAAACTGGTCAAGCGTTCTCAATTCTGGGTTCAAGACCTGGCTCTTAGTAATATACATTTCATGTTTGCAAATGCCACAACTTCCTATCAACAACTAGTGTCTACATACCCTGGACCATTGATGCTTGTTTCCATCCTGTGCCCAGATCCTTATTTCAAGAAAAGGCATCATAAGAGACGGGTTGTACAGAAGCCCTTAGTAGATTCCATTGTGAACAGTTTAATGCCGAGCGGCCAGGTGTTTATCCAATCCGACGTACTTGATGTGGCACTTGACATGAGAGATCAGTTTGATTCTCATTCCAATATCCTGACACACATCCACGAAATTGACACAAGTGTGCTGTGTGACAGCGAGGGATGGCTGTTAAACAATCCAATGGGAATTCGGACCGAGAGAGAAATTCATGCAGAGTTTGAAGGTGCAAAGATTTACAGGCGGGTGTACCAGAAGCAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_4

Protein Analysis

316

Amino Acids

35.61

Weight (kDa)

9.68

Isoelectric Point (pI)

60.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17660
fragaria_vesca	FvH4_7g08330
malus_domestica	MD02G1232000.v1.1
prunus_persica	Prupe.2G106600_v2.0.a1 Prupe.2G106600_v2.0.a1
pyrus_communis	pycom02g20030
rosa_chinensis	RchiOBHm_Chr1g0340401 RchiOBHm_Chr1g0340511 RchiOBHm_Chr1g0340671 RchiOBHm_Chr1g0340701
rosa_laevigata	RLG00000029036
rosa_multiflora	Rmu_sc0000566.1_g000055 Rmu_sc0009976.1_g000002
rosa_roxburghii	Rroxscaffold_4G00311200 Rroxscaffold_4G00311260 Rroxscaffold_4G00315920
rosa_rugosa	Rorug01G0162900.1 Rorug01G0164000.1
rosa_samantha	Rh1AG177700 Rh1BG145200 Rh1BG146600 Rh1CG164900 Rh1DG178700
rosa_wichuraiana	Rw1G014620 Rw1G014790 Rw1G014840 Rw1G014880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	717
AccI	GTMKAC	1 cut(s)	587
AciI	CCGC	3 cut(s)	36, 717, 925
AclWI	GGATC	3 cut(s)	368, 381, 626
AcoI	YGGCCR	2 cut(s)	289, 718
AcsI	RAATTY	3 cut(s)	445, 870, 888
AcuI	CTGAAG	1 cut(s)	352
AdeI	CACNNNGTG	1 cut(s)	50
AfaI	GTAC	4 cut(s)	348, 672, 744, 932
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	3 cut(s)	518, 643, 905
AhlI	ACTAGT	1 cut(s)	580
AjnI	CCWGG	3 cut(s)	522, 595, 720
AleI	CACNNNNGTG	1 cut(s)	824
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	655
AlwI	GGATC	3 cut(s)	368, 381, 626
AoxI	GGCC	3 cut(s)	225, 289, 718
ApeKI	GCWGC	5 cut(s)	9, 53, 178, 181, 205
ApoI	RAATTY	3 cut(s)	445, 870, 888
AspLEI	GCGC	3 cut(s)	155, 173, 337
AspS9I	GGNCC	2 cut(s)	599, 876
AsuHPI	GGTGA	3 cut(s)	96, 113, 122
AvaII	GGWCC	2 cut(s)	599, 876
BaeGI	GKGCMC	1 cut(s)	629
BamHI	GGATCC	1 cut(s)	373
BanII	GRGCYC	2 cut(s)	73, 215
BbsI	GAAGAC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	5 cut(s)	21, 40, 190, 193, 217
BccI	CCATC	3 cut(s)	143, 626, 840
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	3 cut(s)	524, 597, 722
BcoDI	GTCTC	1 cut(s)	655
BcuI	ACTAGT	1 cut(s)	580
BfaI	CTAG	2 cut(s)	221, 581
BfoI	RGCGCY	1 cut(s)	156
BisI	GCNGC	6 cut(s)	10, 54, 179, 182, 206, 718
BlsI	GCNGC	6 cut(s)	11, 55, 180, 183, 207, 719
Bme1390I	CCNGG	3 cut(s)	524, 597, 722
Bme18I	GGWCC	2 cut(s)	599, 876
BmgT120I	GGNCC	2 cut(s)	599, 876
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	3 cut(s)	524, 597, 722
BmrI	ACTGGG	1 cut(s)	284
BmsI	GCATC	2 cut(s)	597, 661
BmuI	ACTGGG	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	358
BsaBI	GATNNNNATC	1 cut(s)	357
BsaJI	CCNNGG	2 cut(s)	228, 595
Bse1I	ACTGG	3 cut(s)	279, 477, 495
Bse3DI	GCAATG	1 cut(s)	380
Bse8I	GATNNNNATC	1 cut(s)	357
BseBI	CCWGG	3 cut(s)	524, 597, 722
BseDI	CCNNGG	2 cut(s)	228, 595
BseGI	GGATG	3 cut(s)	618, 804, 851
BseJI	GATNNNNATC	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	380
BseMII	CTCAG	2 cut(s)	61, 258
BseNI	ACTGG	3 cut(s)	279, 477, 495
BseSI	GKGCMC	1 cut(s)	629
BseXI	GCAGC	5 cut(s)	21, 40, 190, 193, 217
BseYI	CCCAGC	1 cut(s)	19
BshFI	GGCC	3 cut(s)	227, 291, 720
BsiHKAI	GWGCWC	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	483
BsmAI	GTCTC	1 cut(s)	655
BsmBI	CGTCTC	1 cut(s)	655
BsmFI	GGGAC	1 cut(s)	483
BsnI	GGCC	3 cut(s)	227, 291, 720
Bsp1286I	GDGCHC	3 cut(s)	73, 215, 629
Bsp1407I	TGTACA	1 cut(s)	670
Bsp143I	GATC	3 cut(s)	373, 631, 769
BspACI	CCGC	3 cut(s)	36, 717, 925
BspANI	GGCC	3 cut(s)	227, 291, 720
BspCNI	CTCAG	2 cut(s)	60, 259
BspLI	GGNNCC	1 cut(s)	375
BspPI	GGATC	3 cut(s)	368, 381, 626
BspQI	GCTCTTC	1 cut(s)	61
BsrBI	CCGCTC	1 cut(s)	717
BsrDI	GCAATG	1 cut(s)	380
BsrGI	TGTACA	1 cut(s)	670
BsrI	ACTGG	3 cut(s)	279, 477, 495
BssECI	CCNNGG	2 cut(s)	228, 595
BssMI	GATC	3 cut(s)	373, 631, 769
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	3 cut(s)	524, 597, 722
Bst4CI	ACNGT	2 cut(s)	111, 704
Bst6I	CTCTTC	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	670
BstC8I	GCNNGC	2 cut(s)	169, 435
BstDEI	CTNAG	4 cut(s)	47, 267, 530, 682
BstF5I	GGATG	3 cut(s)	618, 804, 851
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	3 cut(s)	155, 173, 337
BstKTI	GATC	3 cut(s)	376, 634, 772
BstMAI	GTCTC	1 cut(s)	655
BstMBI	GATC	3 cut(s)	373, 631, 769
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	3 cut(s)	524, 597, 722
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	3 cut(s)	522, 595, 720
BstSLI	GKGCMC	1 cut(s)	629
BstV1I	GCAGC	5 cut(s)	21, 40, 190, 193, 217
BstV2I	GAAGAC	1 cut(s)	358
BstX2I	RGATCY	2 cut(s)	373, 631
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	2 cut(s)	373, 631
BsuRI	GGCC	3 cut(s)	227, 291, 720
BtsCI	GGATG	3 cut(s)	618, 804, 851
BtsIMutI	CAGTG	2 cut(s)	55, 107
Cac8I	GCNNGC	2 cut(s)	169, 435
CfoI	GCGC	3 cut(s)	155, 173, 337
Cfr13I	GGNCC	2 cut(s)	599, 876
CpoI	CGGWCCG	1 cut(s)	876
Csp6I	GTAC	4 cut(s)	347, 671, 743, 931
CspI	CGGWCCG	1 cut(s)	876
CviAII	CATG	6 cut(s)	287, 305, 391, 547, 763, 893
CviQI	GTAC	4 cut(s)	347, 671, 743, 931
DdeI	CTNAG	4 cut(s)	47, 267, 530, 682
DpnI	GATC	3 cut(s)	375, 633, 771
DpnII	GATC	3 cut(s)	373, 631, 769
DraIII	CACNNNGTG	1 cut(s)	50
EaeI	YGGCCR	2 cut(s)	289, 718
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	2 cut(s)	73, 215
Eco47I	GGWCC	2 cut(s)	599, 876
Eco53kI	GAGCTC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	71
EcoRI	GAATTC	1 cut(s)	870
EcoRII	CCWGG	3 cut(s)	522, 595, 720
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	2 cut(s)	73, 215
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	655
FaeI	CATG	6 cut(s)	290, 308, 394, 550, 766, 896
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	6 cut(s)	286, 304, 390, 546, 762, 892
FauI	CCCGC	1 cut(s)	918
FblI	GTMKAC	1 cut(s)	587
Fnu4HI	GCNGC	6 cut(s)	10, 54, 179, 182, 206, 718
FokI	GGATG	3 cut(s)	605, 791, 858
FriOI	GRGCYC	2 cut(s)	73, 215
Fsp4HI	GCNGC	6 cut(s)	10, 54, 179, 182, 206, 718
FspBI	CTAG	2 cut(s)	221, 581
GlaI	GCGC	3 cut(s)	154, 172, 336
GluI	GCNGC	6 cut(s)	10, 54, 179, 182, 206, 718
GsaI	CCCAGC	1 cut(s)	23
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	3 cut(s)	227, 291, 720
HhaI	GCGC	3 cut(s)	155, 173, 337
Hin1II	CATG	6 cut(s)	290, 308, 394, 550, 766, 896
Hin6I	GCGC	3 cut(s)	153, 171, 335
HinP1I	GCGC	3 cut(s)	153, 171, 335
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	5 cut(s)	294, 358, 363, 689, 779
HphI	GGTGA	3 cut(s)	96, 113, 122
Hpy166II	GTNNAC	4 cut(s)	310, 588, 700, 931
Hpy188I	TCNGA	5 cut(s)	75, 268, 318, 739, 876
Hpy188III	TCNNGA	3 cut(s)	518, 643, 796
Hpy8I	GTNNAC	4 cut(s)	310, 588, 700, 931
Hpy99I	CGWCG	1 cut(s)	743
HpyAV	CCTTC	2 cut(s)	126, 899
HpyCH4III	ACNGT	2 cut(s)	111, 704
HpyCH4IV	ACGT	1 cut(s)	741
HpyCH4V	TGCA	6 cut(s)	4, 56, 82, 554, 896, 911
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	4 cut(s)	47, 267, 530, 682
HpySE526I	ACGT	1 cut(s)	741
Hsp92II	CATG	6 cut(s)	290, 308, 394, 550, 766, 896
HspAI	GCGC	3 cut(s)	153, 171, 335
Kzo9I	GATC	3 cut(s)	373, 631, 769
LguI	GCTCTTC	1 cut(s)	61
Lsp1109I	GCAGC	5 cut(s)	21, 40, 190, 193, 217
LweI	GCATC	2 cut(s)	597, 661
MaeI	CTAG	2 cut(s)	221, 581
MaeII	ACGT	1 cut(s)	741
MaeIII	GTNAC	2 cut(s)	111, 833
MalI	GATC	3 cut(s)	375, 633, 771
MbiI	CCGCTC	1 cut(s)	717
MboI	GATC	3 cut(s)	373, 631, 769
MboII	GAAGA	4 cut(s)	78, 156, 358, 496
MflI	RGATCY	2 cut(s)	373, 631
MhlI	GDGCHC	3 cut(s)	73, 215, 629
MluCI	AATT	7 cut(s)	125, 445, 460, 506, 813, 870, 888
MlyI	GAGTC	1 cut(s)	372
MmeI	TCCRAC	2 cut(s)	401, 762
MnlI	CCTC	5 cut(s)	166, 262, 324, 334, 835
MseI	TTAA	3 cut(s)	246, 707, 854
MslI	CAYNNNNRTG	1 cut(s)	824
MspR9I	CCNGG	3 cut(s)	524, 597, 722
MvaI	CCWGG	3 cut(s)	524, 597, 722
MwoI	GCNNNNNNNGC	1 cut(s)	187
NdeII	GATC	3 cut(s)	373, 631, 769
NlaIII	CATG	6 cut(s)	290, 308, 394, 550, 766, 896
NlaIV	GGNNCC	1 cut(s)	375
NmeAIII	GCCGAG	1 cut(s)	738
NmuCI	GTSAC	1 cut(s)	833
NspI	RCATGY	1 cut(s)	308
OliI	CACNNNNGTG	1 cut(s)	824
PciI	ACATGT	1 cut(s)	304
PciSI	GCTCTTC	1 cut(s)	61
PfeI	GAWTC	4 cut(s)	294, 358, 689, 779
PkrI	GCNGC	6 cut(s)	11, 55, 180, 183, 207, 719
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
PscI	ACATGT	1 cut(s)	304
Psp124BI	GAGCTC	1 cut(s)	73
Psp6I	CCWGG	3 cut(s)	522, 595, 720
PspFI	CCCAGC	1 cut(s)	19
PspGI	CCWGG	3 cut(s)	522, 595, 720
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	2 cut(s)	599, 876
PsuI	RGATCY	2 cut(s)	373, 631
RsaI	GTAC	4 cut(s)	348, 672, 744, 932
RsaNI	GTAC	4 cut(s)	347, 671, 743, 931
RseI	CAYNNNNRTG	1 cut(s)	824
Rsr2I	CGGWCCG	1 cut(s)	876
RsrII	CGGWCCG	1 cut(s)	876
SacI	GAGCTC	1 cut(s)	73
SapI	GCTCTTC	1 cut(s)	61
SaqAI	TTAA	3 cut(s)	246, 707, 854
SatI	GCNGC	6 cut(s)	10, 54, 179, 182, 206, 718
Sau3AI	GATC	3 cut(s)	373, 631, 769
Sau96I	GGNCC	2 cut(s)	599, 876
SchI	GAGTC	1 cut(s)	372
ScrFI	CCNGG	3 cut(s)	524, 597, 722
SduI	GDGCHC	3 cut(s)	73, 215, 629
SfaNI	GCATC	2 cut(s)	597, 661
SinI	GGWCC	2 cut(s)	599, 876
SmiMI	CAYNNNNRTG	1 cut(s)	824
SpeI	ACTAGT	1 cut(s)	580
Sse9I	AATT	7 cut(s)	125, 445, 460, 506, 813, 870, 888
SsiI	CCGC	3 cut(s)	36, 717, 925
SspMI	CTAG	2 cut(s)	221, 581
SstI	GAGCTC	1 cut(s)	73
StyD4I	CCNGG	3 cut(s)	522, 595, 720
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	111, 704
TaiI	ACGT	1 cut(s)	744
TaqI	TCGA	1 cut(s)	361
TaqII	GACCGA	1 cut(s)	893
TasI	AATT	7 cut(s)	125, 445, 460, 506, 813, 870, 888
TatI	WGTACW	1 cut(s)	670
TauI	GCSGC	1 cut(s)	720
TfiI	GAWTC	4 cut(s)	294, 358, 689, 779
Tru1I	TTAA	3 cut(s)	246, 707, 854
Tru9I	TTAA	3 cut(s)	246, 707, 854
TscAI	CASTG	2 cut(s)	55, 114
TseFI	GTSAC	1 cut(s)	833
TseI	GCWGC	5 cut(s)	9, 53, 178, 181, 205
Tsp45I	GTSAC	1 cut(s)	833
TspDTI	ATGAA	2 cut(s)	535, 881
TspGWI	ACGGA	1 cut(s)	496
TspRI	CASTG	2 cut(s)	55, 114
VpaK11BI	GGWCC	2 cut(s)	599, 876
XapI	RAATTY	3 cut(s)	445, 870, 888
XceI	RCATGY	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	587
XspI	CTAG	2 cut(s)	221, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.