RchiOBHm_Chr1g0340511

tRNA (guanine-N(7)-)-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
32028260 .. 32028565
306 bp
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UTR
Exon/CDS
Intron
PRQ56729

Sequence Viewer

Length: 306 bp
ATGATTCTTTATGTCATTAACTTACCTGCAAGCTTCAGTGATATAACTAATATTATGTCTGCGCAGGTGTTTATACAGTCCGATGTACTTGACGTCGCACTTGAGATGAGAAACCAATTTGATTCTCTGCCCCATGTTCTGAAGCACATAGATGAAATCGAATCCAGCGTGTTGTGTGACAGTGAGGGATGGTTGTTGAGCAATCCAATGGGCAAAAGGACGGAAAGAGAAATTCATGCTGAATTTGAAGGGGCAAAAATTTACAGGAGAGTATACCAGAAGCAAGCACAGAAGGCTCTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

11.54

Weight (kDa)

5.25

Isoelectric Point (pI)

62.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 55
AatII GACGTC 1 cut(s) 96
Acc16I TGCGCA 1 cut(s) 63
Acc36I ACCTGC 2 cut(s) 34, 55
AccI GTMKAC 1 cut(s) 273
AcsI RAATTY 3 cut(s) 231, 242, 258
AcuI CTGAAG 2 cut(s) 19, 161
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 1 cut(s) 87
AgsI TTSAA 1 cut(s) 248
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
ApoI RAATTY 3 cut(s) 231, 242, 258
AspLEI GCGC 1 cut(s) 64
BccI CCATC 1 cut(s) 183
BfuAI ACCTGC 2 cut(s) 34, 55
BpuEI CTTGAG 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 93
BseGI GGATG 1 cut(s) 194
BspMI ACCTGC 2 cut(s) 34, 55
BssNAI GTATAC 1 cut(s) 274
BssNI GRCGYC 1 cut(s) 93
Bst1107I GTATAC 1 cut(s) 274
Bst4CI ACNGT 2 cut(s) 78, 182
BstACI GRCGYC 1 cut(s) 93
BstC8I GCNNGC 2 cut(s) 31, 285
BstF5I GGATG 1 cut(s) 194
BstHHI GCGC 1 cut(s) 64
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstZ17I GTATAC 1 cut(s) 274
BtsCI GGATG 1 cut(s) 194
BtsIMutI CAGTG 2 cut(s) 43, 187
BveI ACCTGC 2 cut(s) 34, 55
Cac8I GCNNGC 2 cut(s) 31, 285
CfoI GCGC 1 cut(s) 64
Csp6I GTAC 1 cut(s) 86
CviAII CATG 2 cut(s) 134, 236
CviJI RGCY 2 cut(s) 33, 296
CviKI_1 RGCY 2 cut(s) 33, 296
CviQI GTAC 1 cut(s) 86
Eco57I CTGAAG 2 cut(s) 19, 161
FaeI CATG 2 cut(s) 137, 239
FaiI YATR 8 cut(s) 12, 44, 56, 74, 135, 149, 237, 274
FatI CATG 2 cut(s) 133, 235
FblI GTMKAC 1 cut(s) 273
FokI GGATG 1 cut(s) 201
FspI TGCGCA 1 cut(s) 63
GlaI GCGC 1 cut(s) 63
HhaI GCGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 2 cut(s) 137, 239
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HindIII AAGCTT 1 cut(s) 31
HinfI GANTC 3 cut(s) 4, 122, 161
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 2 cut(s) 82, 141
Hpy8I GTNNAC 1 cut(s) 274
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 242, 286
HpyCH4III ACNGT 2 cut(s) 78, 182
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 2 cut(s) 137, 239
HspAI GCGC 1 cut(s) 62
LpnPI CCDG 5 cut(s) 39, 50, 178, 250, 290
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 176
MluCI AATT 4 cut(s) 116, 231, 242, 258
MnlI CCTC 1 cut(s) 178
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 293
NlaIII CATG 2 cut(s) 137, 239
NmuCI GTSAC 1 cut(s) 176
NsbI TGCGCA 1 cut(s) 63
PaqCI CACCTGC 1 cut(s) 55
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfeI GAWTC 3 cut(s) 4, 122, 161
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 1 cut(s) 18
SetI ASST 4 cut(s) 28, 35, 69, 96
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 4 cut(s) 116, 231, 242, 258
SspI AATATT 1 cut(s) 52
TaaI ACNGT 2 cut(s) 78, 182
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 159
TasI AATT 4 cut(s) 116, 231, 242, 258
TatI WGTACW 1 cut(s) 85
TfiI GAWTC 3 cut(s) 4, 122, 161
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 2 cut(s) 43, 187
TseFI GTSAC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 168, 224
TspGWI ACGGA 1 cut(s) 236
TspRI CASTG 2 cut(s) 43, 187
XapI RAATTY 3 cut(s) 231, 242, 258
XmiI GTMKAC 1 cut(s) 273
ZraI GACGTC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.