AT5G27450

mevalonate kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
9690428 .. 9693289
2862 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G27450.2

Sequence Viewer

Length: 1137 bp
ATGGAAGTGAAAGCTAGAGCTCCTGGGAAGATCATACTTGCAGGGGAACACGCTGTTGTTCATGGATCCACCGCTGTAGCTGCCGCCATTGATCTCTACACTTACGTTACTCTCCGCTTTCCTCTTCCATCAGCTGAGAACAATGATAGGCTTACACTTCAGCTCAAGGACATTTCCTTGGAGTTTTCATGGTCCTTAGCCAGAATCAAAGAAGCGATTCCTTATGATTCAAGCACTCTCTGCCGTTCTACGCCGGCTTCATGTTCAGAGGAGACCCTTAAATCAATTGCAGTTTTGGTTGAAGAGCAAAATCTTCCAAAGGAAAAGATGTGGCTCTCCTCTGGGATCTCCACGTTTCTCTGGTTATACACCAGAATTATAGGGTTCAATCCGGCTACAGTAGTCATTAACTCTGAGCTTCCATACGGGTCTGGCCTCGGTTCATCAGCAGCTTTATGTGTAGCTCTCACAGCTGCTCTCCTTGCTTCTTCTATTTCAGAGAAAACCCGTGGTAACGGTTGGTCATCTCTCGATGAAACCAATCTTGAGTTGCTAAATAAATGGGCTTTCGAAGGCGAAAAGATCATCCATGGGAAACCTTCTGGGATAGACAACACCGTCAGTGCATACGGCAACATGATCAAGTTCTGCTCAGGCGAGATAACTCGGTTACAATCCAACATGCCTCTGAGAATGCTAATTACCAACACTAGAGTTGGGCGAAACACAAAAGCTCTGGTCTCTGGTGTGTCACAGAGAGCGGTAAGACATCCTGATGCGATGAAGTCAGTGTTCAACGCCGTGGATTCTATAAGCAAAGAGCTCGCTGCGATCATTCAGTCTAAAGACGAGACCTCAGTTACAGAAAAAGAAGAGAGAATAAAAGAACTCATGGAGATGAACCAAGGTCTGCTCCTGTCAATGGGGGTTAGCCACAGCTCAATCGAGGCTGTGATTCTAACCACGGTCAAGCACAAGCTTGTCTCCAAACTTACAGGAGCTGGTGGCGGCGGCTGCGTCCTCACTCTATTACCAACCGGGACGGTGGTGGACAAAGTGGTGGAGGAGCTCGAGTCCAGCGGTTTTCAGTGTTTCACGGCATTGATTGGTGGTAACGGAGCTCAGATTTGCTATTGA

Protein Analysis

378

Amino Acids

40.64

Weight (kDa)

6.35

Isoelectric Point (pI)

31.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GHMP_kinases_N PF00288 126 - 211 7.3e-11 GHMP kinases N terminal domain
GHMP_kinases_C PF08544 292 - 359 1.5e-06 GHMP kinases C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 617
AccBSI CCGCTC 1 cut(s) 761
AciI CCGC 7 cut(s) 72, 84, 115, 761, 1008, 1011, 1080
AclWI GGATC 3 cut(s) 60, 73, 353
AcuI CTGAAG 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 922
AgsI TTSAA 4 cut(s) 231, 302, 388, 796
AjnI CCWGG 1 cut(s) 22
Alw21I GWGCWC 4 cut(s) 22, 825, 1071, 1123
Alw26I GTCTC 4 cut(s) 266, 745, 845, 988
AlwI GGATC 3 cut(s) 60, 73, 353
AlwNI CAGNNNCTG 1 cut(s) 1001
Ama87I CYCGRG 1 cut(s) 1070
AoxI GGCC 1 cut(s) 433
ApeKI GCWGC 5 cut(s) 80, 449, 473, 827, 1014
Asp700I GAANNNNTTC 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 192
AsuC2I CCSGG 1 cut(s) 1039
AsuII TTCGAA 1 cut(s) 570
AvaI CYCGRG 1 cut(s) 1070
AvaII GGWCC 1 cut(s) 192
BamHI GGATCC 1 cut(s) 65
BanII GRGCYC 4 cut(s) 22, 825, 1071, 1123
Bbv12I GWGCWC 4 cut(s) 22, 825, 1071, 1123
BbvI GCAGC 5 cut(s) 67, 460, 461, 814, 1001
BccI CCATC 1 cut(s) 136
BceAI ACGGC 4 cut(s) 228, 646, 785, 1113
BcgI CGANNNNNNTGC 2 cut(s) 805, 839
BciT130I CCWGG 1 cut(s) 24
BclI TGATCA 1 cut(s) 639
BcnI CCSGG 1 cut(s) 1039
BcoDI GTCTC 4 cut(s) 266, 745, 845, 988
BfaI CTAG 2 cut(s) 15, 711
BfmI CTRYAG 2 cut(s) 75, 396
BisI GCNGC 8 cut(s) 81, 84, 450, 474, 828, 1009, 1012, 1015
BlsI GCNGC 8 cut(s) 82, 85, 451, 475, 829, 1010, 1013, 1016
Bme1390I CCNGG 2 cut(s) 24, 1039
Bme18I GGWCC 1 cut(s) 192
BmeT110I CYCGRG 1 cut(s) 1070
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 2 cut(s) 24, 1039
BmsI GCATC 1 cut(s) 766
Bpu10I CCTNAGC 2 cut(s) 196, 652
Bpu14I TTCGAA 1 cut(s) 570
BpuEI CTTGAG 2 cut(s) 149, 566
BpuMI CCSGG 1 cut(s) 1039
BsaI GGTCTC 3 cut(s) 266, 745, 845
BsaJI CCNNGG 8 cut(s) 23, 177, 436, 508, 589, 801, 904, 963
BsaXI ACNNNNNCTCC 2 cut(s) 1058, 1088
Bsc4I CCNNNNNNNGG 1 cut(s) 922
Bse118I RCCGGY 1 cut(s) 253
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 8 cut(s) 23, 177, 436, 508, 589, 801, 904, 963
BseGI GGATG 2 cut(s) 585, 769
BseLI CCNNNNNNNGG 1 cut(s) 922
BseMII CTCAG 6 cut(s) 126, 405, 666, 680, 870, 1136
BseRI GAGGAG 3 cut(s) 284, 328, 1079
BseXI GCAGC 5 cut(s) 67, 460, 461, 814, 1001
BshFI GGCC 1 cut(s) 435
BsiHKAI GWGCWC 4 cut(s) 22, 825, 1071, 1123
BsiHKCI CYCGRG 1 cut(s) 1070
BsiSI CCGG 3 cut(s) 254, 392, 1038
BslFI GGGAC 1 cut(s) 1054
BslI CCNNNNNNNGG 1 cut(s) 922
BsmAI GTCTC 4 cut(s) 266, 745, 845, 988
BsmFI GGGAC 1 cut(s) 1054
BsmI GAATGC 1 cut(s) 699
BsnI GGCC 1 cut(s) 435
Bso31I GGTCTC 3 cut(s) 266, 745, 845
BsoBI CYCGRG 1 cut(s) 1070
Bsp119I TTCGAA 1 cut(s) 570
Bsp1286I GDGCHC 4 cut(s) 22, 825, 1071, 1123
Bsp143I GATC 7 cut(s) 30, 65, 91, 345, 582, 639, 831
Bsp19I CCATGG 1 cut(s) 589
BspACI CCGC 7 cut(s) 72, 84, 115, 761, 1008, 1011, 1080
BspANI GGCC 1 cut(s) 435
BspCNI CTCAG 6 cut(s) 127, 406, 665, 681, 869, 1135
BspLI GGNNCC 1 cut(s) 67
BspPI GGATC 3 cut(s) 60, 73, 353
BspQI GCTCTTC 1 cut(s) 297
BspT104I TTCGAA 1 cut(s) 570
BspTNI GGTCTC 3 cut(s) 266, 745, 845
BsrBI CCGCTC 1 cut(s) 761
BsrFI RCCGGY 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 8 cut(s) 23, 177, 436, 508, 589, 801, 904, 963
BssMI GATC 7 cut(s) 30, 65, 91, 345, 582, 639, 831
BssT1I CCWWGG 3 cut(s) 177, 589, 904
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 5 cut(s) 400, 518, 619, 967, 1045
Bst6I CTCTTC 3 cut(s) 129, 297, 867
BstAPI GCANNNNNTGC 1 cut(s) 240
BstBI TTCGAA 1 cut(s) 570
BstC8I GCNNGC 2 cut(s) 255, 825
BstDEI CTNAG 7 cut(s) 135, 196, 414, 652, 689, 856, 1122
BstDSI CCRYGG 4 cut(s) 508, 589, 801, 963
BstF5I GGATG 2 cut(s) 585, 769
BstKTI GATC 7 cut(s) 33, 68, 94, 348, 585, 642, 834
BstMAI GTCTC 4 cut(s) 266, 745, 845, 988
BstMBI GATC 7 cut(s) 30, 65, 91, 345, 582, 639, 831
BstMWI GCNNNNNNNGC 5 cut(s) 80, 240, 470, 482, 1014
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 685
BstSCI CCNGG 2 cut(s) 22, 1037
BstSFI CTRYAG 2 cut(s) 75, 396
BstV1I GCAGC 5 cut(s) 67, 460, 461, 814, 1001
BstX2I RGATCY 2 cut(s) 65, 345
BstYI RGATCY 2 cut(s) 65, 345
BsuRI GGCC 1 cut(s) 435
BtgI CCRYGG 4 cut(s) 508, 589, 801, 963
BtgZI GCGATG 1 cut(s) 794
BtsCI GGATG 2 cut(s) 585, 769
BtsIMutI CAGTG 3 cut(s) 628, 795, 1094
Cac8I GCNNGC 2 cut(s) 255, 825
CaiI CAGNNNCTG 1 cut(s) 1001
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 192
CseI GACGC 1 cut(s) 1006
CviAII CATG 7 cut(s) 62, 189, 261, 590, 637, 682, 892
DdeI CTNAG 7 cut(s) 135, 196, 414, 652, 689, 856, 1122
DpnI GATC 7 cut(s) 32, 67, 93, 347, 584, 641, 833
DpnII GATC 7 cut(s) 30, 65, 91, 345, 582, 639, 831
DrdI GACNNNNNNGTC 1 cut(s) 617
DseDI GACNNNNNNGTC 1 cut(s) 617
Eam1104I CTCTTC 3 cut(s) 129, 297, 867
EarI CTCTTC 3 cut(s) 129, 297, 867
Ecl136II GAGCTC 4 cut(s) 20, 823, 1069, 1121
Eco130I CCWWGG 3 cut(s) 177, 589, 904
Eco24I GRGCYC 4 cut(s) 22, 825, 1071, 1123
Eco31I GGTCTC 3 cut(s) 266, 745, 845
Eco47I GGWCC 1 cut(s) 192
Eco53kI GAGCTC 4 cut(s) 20, 823, 1069, 1121
Eco57I CTGAAG 1 cut(s) 143
Eco88I CYCGRG 1 cut(s) 1070
EcoICRI GAGCTC 4 cut(s) 20, 823, 1069, 1121
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 3 cut(s) 177, 589, 904
EcoT38I GRGCYC 4 cut(s) 22, 825, 1071, 1123
ErhI CCWWGG 3 cut(s) 177, 589, 904
FaeI CATG 7 cut(s) 65, 192, 264, 593, 640, 685, 895
FaqI GGGAC 1 cut(s) 1054
FatI CATG 7 cut(s) 61, 188, 260, 589, 636, 681, 891
FbaI TGATCA 1 cut(s) 639
Fnu4HI GCNGC 8 cut(s) 81, 84, 450, 474, 828, 1009, 1012, 1015
FokI GGATG 2 cut(s) 572, 756
FriOI GRGCYC 4 cut(s) 22, 825, 1071, 1123
Fsp4HI GCNGC 8 cut(s) 81, 84, 450, 474, 828, 1009, 1012, 1015
FspBI CTAG 2 cut(s) 15, 711
GluI GCNGC 8 cut(s) 81, 84, 450, 474, 828, 1009, 1012, 1015
HaeIII GGCC 1 cut(s) 435
HapII CCGG 3 cut(s) 254, 392, 1038
HgaI GACGC 1 cut(s) 1006
Hin1II CATG 7 cut(s) 65, 192, 264, 593, 640, 685, 895
HindIII AAGCTT 1 cut(s) 977
HinfI GANTC 6 cut(s) 204, 217, 227, 806, 955, 1073
HpaII CCGG 3 cut(s) 254, 392, 1038
Hpy166II GTNNAC 1 cut(s) 1051
Hpy188I TCNGA 5 cut(s) 268, 415, 499, 690, 1125
Hpy188III TCNNGA 3 cut(s) 530, 545, 773
Hpy8I GTNNAC 1 cut(s) 1051
HpyAV CCTTC 2 cut(s) 566, 609
HpyCH4III ACNGT 5 cut(s) 400, 518, 619, 967, 1045
HpyCH4IV ACGT 2 cut(s) 105, 353
HpyCH4V TGCA 3 cut(s) 41, 290, 626
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 240, 470, 482, 1014
HpyF3I CTNAG 7 cut(s) 135, 196, 414, 652, 689, 856, 1122
HpySE526I ACGT 2 cut(s) 105, 353
Hsp92II CATG 7 cut(s) 65, 192, 264, 593, 640, 685, 895
KroI GCCGGC 1 cut(s) 253
KroNI GCCGGC 1 cut(s) 255
Ksp22I TGATCA 1 cut(s) 639
Kzo9I GATC 7 cut(s) 30, 65, 91, 345, 582, 639, 831
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 5 cut(s) 25, 918, 998, 1066, 1118
Lsp1109I GCAGC 5 cut(s) 67, 460, 461, 814, 1001
LweI GCATC 1 cut(s) 766
MaeI CTAG 2 cut(s) 15, 711
MaeII ACGT 2 cut(s) 105, 353
MaeIII GTNAC 6 cut(s) 106, 512, 669, 750, 859, 1112
MalI GATC 7 cut(s) 32, 67, 93, 347, 584, 641, 833
MbiI CCGCTC 1 cut(s) 761
MboI GATC 7 cut(s) 30, 65, 91, 345, 582, 639, 831
MboII GAAGA 6 cut(s) 40, 116, 305, 314, 480, 884
MfeI CAATTG 1 cut(s) 285
MflI RGATCY 2 cut(s) 65, 345
MhlI GDGCHC 4 cut(s) 22, 825, 1071, 1123
MluCI AATT 3 cut(s) 285, 375, 699
MlyI GAGTC 1 cut(s) 1082
MmeI TCCRAC 1 cut(s) 702
MnlI CCTC 9 cut(s) 132, 262, 349, 446, 696, 865, 940, 1031, 1057
MroNI GCCGGC 1 cut(s) 253
MroXI GAANNNNTTC 1 cut(s) 216
MseI TTAA 2 cut(s) 279, 408
MslI CAYNNNNRTG 2 cut(s) 774, 896
MspA1I CMGCKG 4 cut(s) 74, 134, 473, 1080
MspI CCGG 3 cut(s) 254, 392, 1038
MspR9I CCNGG 2 cut(s) 24, 1039
MunI CAATTG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 699
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 5 cut(s) 80, 240, 470, 482, 1014
NaeI GCCGGC 1 cut(s) 255
NciI CCSGG 1 cut(s) 1039
NcoI CCATGG 1 cut(s) 589
NdeII GATC 7 cut(s) 30, 65, 91, 345, 582, 639, 831
NgoMIV GCCGGC 1 cut(s) 253
NlaIII CATG 7 cut(s) 65, 192, 264, 593, 640, 685, 895
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 750
NspI RCATGY 1 cut(s) 685
NspV TTCGAA 1 cut(s) 570
PaeR7I CTCGAG 1 cut(s) 1070
PciSI GCTCTTC 1 cut(s) 297
PctI GAATGC 1 cut(s) 699
PdiI GCCGGC 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 5 cut(s) 204, 217, 227, 806, 955
PkrI GCNGC 8 cut(s) 82, 85, 451, 475, 829, 1010, 1013, 1016
PleI GAGTC 1 cut(s) 1081
PpsI GAGTC 1 cut(s) 1081
Psp124BI GAGCTC 4 cut(s) 22, 825, 1071, 1123
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 1 cut(s) 192
PspXI VCTCGAGB 1 cut(s) 1070
PstNI CAGNNNCTG 1 cut(s) 1001
PsuI RGATCY 2 cut(s) 65, 345
PvuII CAGCTG 2 cut(s) 134, 473
RseI CAYNNNNRTG 2 cut(s) 774, 896
SacI GAGCTC 4 cut(s) 22, 825, 1071, 1123
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 2 cut(s) 279, 408
SatI GCNGC 8 cut(s) 81, 84, 450, 474, 828, 1009, 1012, 1015
Sau3AI GATC 7 cut(s) 30, 65, 91, 345, 582, 639, 831
Sau96I GGNCC 1 cut(s) 192
SchI GAGTC 1 cut(s) 1082
ScrFI CCNGG 2 cut(s) 24, 1039
SduI GDGCHC 4 cut(s) 22, 825, 1071, 1123
SfaNI GCATC 1 cut(s) 766
SfcI CTRYAG 2 cut(s) 75, 396
Sfr274I CTCGAG 1 cut(s) 1070
SfuI TTCGAA 1 cut(s) 570
SinI GGWCC 1 cut(s) 192
SlaI CTCGAG 1 cut(s) 1070
SmiMI CAYNNNNRTG 2 cut(s) 774, 896
SmlI CTYRAG 3 cut(s) 164, 545, 1070
SmoI CTYRAG 3 cut(s) 164, 545, 1070
Sse9I AATT 3 cut(s) 285, 375, 699
SsiI CCGC 7 cut(s) 72, 84, 115, 761, 1008, 1011, 1080
SspMI CTAG 2 cut(s) 15, 711
SstI GAGCTC 4 cut(s) 22, 825, 1071, 1123
StyD4I CCNGG 2 cut(s) 22, 1037
StyI CCWWGG 3 cut(s) 177, 589, 904
TaaI ACNGT 5 cut(s) 400, 518, 619, 967, 1045
TaiI ACGT 2 cut(s) 108, 356
TaqI TCGA 4 cut(s) 531, 570, 945, 1071
TasI AATT 3 cut(s) 285, 375, 699
TauI GCSGC 3 cut(s) 86, 1011, 1014
TfiI GAWTC 5 cut(s) 204, 217, 227, 806, 955
Tru1I TTAA 2 cut(s) 279, 408
Tru9I TTAA 2 cut(s) 279, 408
TscAI CASTG 3 cut(s) 628, 795, 1094
TseFI GTSAC 1 cut(s) 750
TseI GCWGC 5 cut(s) 80, 449, 473, 827, 1014
Tsp45I GTSAC 1 cut(s) 750
TspDTI ATGAA 7 cut(s) 50, 177, 249, 432, 549, 797, 914
TspGWI ACGGA 1 cut(s) 1131
TspRI CASTG 3 cut(s) 628, 795, 1094
VpaK11BI GGWCC 1 cut(s) 192
XceI RCATGY 1 cut(s) 685
XhoI CTCGAG 1 cut(s) 1070
XmnI GAANNNNTTC 1 cut(s) 216
XspI CTAG 2 cut(s) 15, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.