Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004691

Physical Location & Seq

Genomic Coordinates Forward (+)

39621271 .. 39624638

Gene Structure 3368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G028810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGAAGTAAAACCCAGAGCACCTGGAATGATCATACTGTTTGGTGAACATGCTGTGGTTCATGGATCTACTGCCGTCTCTGCCTCCATTGACCTGTGTACCTATGCCACTCTTTGCTTTCCTGCTCATTCTGATAATAATGGTTTACTTAGACTGGAGCTCAAGGATATTGGATTAGAGTTTCTGTGGCCAGTTGGTAGGATTAAGGAAGCACTATCCGGAATAGATGTTCCCAACCCATCAACACCTACCTCATGTCCAGCAGAGTTGAACAAATCACTTGCTATTTTAGTTGAAGAACTAAACATTCCAGAGGTAAAGATCGGAATAGCTGCTGGAGTCTTGGCTTTTCTTTGGCTATATTCATCTATCCAAGGGTATGGGACTCCTGCAACAGTTATTATCAGTTCGGAACTTCCTTTGGGTTCAGGTCTTGGTTTATCTGCCGCACTTTGTGTTGCATTCTCTGGTGCTCTTCTTGCTTACTCAGATTGTGCGAGTCTGGATTTCAGCCACCAGGGGTGGTTAGATTTTGGCGGAAGCGAACTTGACTTGCTGAATAAATGGGCATTTGAAGGTGAAAAAATCATCCATGGAAAGCCATCTGGAATTGACAACACAGCACATATGGTGATTATTATCTTCCTTATCTGTCTGAACTTTGTTCATGAAACGGGAAATATGATCAAGTTTAGATCAGGCAGTTTGACACGCCTCAAATCAAACATGCCACTCAAAATGCTCATTACTAACACAAAAGTTGGGAGGAACACAAAGGCCTTAATTCCAGATGCTATGGCTTCTGTGTTTAATGCAGTTGATTCTATCAGCGTGGAATTGGCTACCATTATCCAATCAGAGGCCCCTGATGAAATCTCTGTAACTGAGAAGGTGGCGAAAATAGAAGAGCTGATGGAAATGAACCAAGGCTTGCTCCAATGCACAGGGGTCAGCCATGCTTCAATCATTCTGCGAACTACACTTGGCTTCCAAGTTGACAGGATCTGGTGGTGGAGGTTGTGTTCTCACACTATTGCCAACCTGTATCCTTTTCATGATTCCTTTTATTTCATGCTATCAGCAACAGTTGTTGATAAAGTAACTGCAGAGCTGGAGTCGTGTGGATTCCATTGCTTAACAGCGGCCATTGGTGGACAAGGTGTTCAAGTTTGCTTTGGTGGTTCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

396

Amino Acids

42.64

Weight (kDa)

5.28

Isoelectric Point (pI)

30.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	128 - 208	1.4e-07	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27450 AT5G27450 AT5G27450
fragaria_vesca	FvH4_6g05650 FvH4_6g05650
malus_domestica	MD04G1206900.v1.1 MD12G1220700.v1.1
prunus_persica	Prupe.6G327600_v2.0.a1
pyrus_communis	pycom04g18290 pycom12g20650
rosa_chinensis	RchiOBHm_Chr3g0454501 RchiOBHm_Chr7g0220931
rosa_laevigata	RLG00000002188 RLG00000002192 RLG00000025439
rosa_multiflora	Rmu_sc0002105.1_g000027 Rmu_sc0007209.1_g000003 Rmu_sc0026738.1_g000003
rosa_roxburghii	Rroxscaffold_6G00425020 Rroxscaffold_6G00425040
rosa_rugosa	Rorug03G0000100 Rorug07G0198300
rosa_samantha	Rh3AG059300 Rh3BG061400 Rh3CG060200 Rh3DG061100 Rh7DG337500
rosa_wichuraiana	Rw0G017160 Rw0G017190 Rw3G004600 Rw7G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	218
AciI	CCGC	3 cut(s)	447, 537, 1142
AclWI	GGATC	2 cut(s)	73, 1010
AcoI	YGGCCR	2 cut(s)	188, 1143
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	859
AgsI	TTSAA	5 cut(s)	271, 296, 575, 963, 1166
AjnI	CCWGG	2 cut(s)	22, 516
AloI	GAACNNNNNNTCC	6 cut(s)	213, 245, 1006, 1038, 1146, 1178
AluBI	AGCT	4 cut(s)	160, 332, 910, 1111
AluI	AGCT	4 cut(s)	160, 332, 910, 1111
Alw21I	GWGCWC	3 cut(s)	22, 162, 475
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	2 cut(s)	73, 1010
AlwNI	CAGNNNCTG	1 cut(s)	1005
Aor13HI	TCCGGA	1 cut(s)	218
AoxI	GGCC	4 cut(s)	188, 777, 861, 1143
ApeKI	GCWGC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	862
AsuHPI	GGTGA	3 cut(s)	56, 590, 643
BaeI	ACNNNNGTAYC	2 cut(s)	82, 115
BalI	TGGCCA	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	3 cut(s)	22, 162, 475
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	3 cut(s)	247, 610, 907
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	2 cut(s)	24, 518
BciVI	GTATCC	1 cut(s)	1056
BclI	TGATCA	2 cut(s)	30, 684
BcoDI	GTCTC	1 cut(s)	82
BfmI	CTRYAG	1 cut(s)	1104
BfuI	GTATCC	1 cut(s)	1056
BisI	GCNGC	3 cut(s)	333, 447, 1143
BlsI	GCNGC	3 cut(s)	334, 448, 1144
Bme1390I	CCNGG	2 cut(s)	24, 518
BmgT120I	GGNCC	1 cut(s)	862
BmiI	GGNNCC	1 cut(s)	864
BmrFI	CCNGG	2 cut(s)	24, 518
BmsI	GCATC	1 cut(s)	781
BpmI	CTGGAG	3 cut(s)	176, 357, 1133
BpuEI	CTTGAG	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	638
BsaJI	CCNNGG	4 cut(s)	373, 517, 592, 925
BsaWI	WCCGGW	1 cut(s)	218
BsaXI	ACNNNNNCTCC	2 cut(s)	1006, 1036
Bsc4I	CCNNNNNNNGG	1 cut(s)	859
Bse1I	ACTGG	2 cut(s)	159, 191
Bse3DI	GCAATG	1 cut(s)	1129
Bse8I	GATNNNNATC	1 cut(s)	638
BseAI	TCCGGA	1 cut(s)	218
BseBI	CCWGG	2 cut(s)	24, 518
BseDI	CCNNGG	4 cut(s)	373, 517, 592, 925
BseGI	GGATG	2 cut(s)	588, 1184
BseJI	GATNNNNATC	1 cut(s)	638
BseLI	CCNNNNNNNGG	1 cut(s)	859
BseMI	GCAATG	1 cut(s)	1129
BseMII	CTCAG	2 cut(s)	501, 876
BseNI	ACTGG	2 cut(s)	159, 191
BseXI	GCAGC	1 cut(s)	319
BshFI	GGCC	4 cut(s)	190, 779, 863, 1145
BsiHKAI	GWGCWC	3 cut(s)	22, 162, 475
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	859
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	397
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	4 cut(s)	190, 779, 863, 1145
Bsp1286I	GDGCHC	3 cut(s)	22, 162, 475
Bsp13I	TCCGGA	1 cut(s)	218
Bsp143I	GATC	6 cut(s)	30, 65, 321, 684, 695, 1002
Bsp19I	CCATGG	1 cut(s)	592
BspACI	CCGC	3 cut(s)	447, 537, 1142
BspANI	GGCC	4 cut(s)	190, 779, 863, 1145
BspCNI	CTCAG	2 cut(s)	500, 877
BspEI	TCCGGA	1 cut(s)	218
BspHI	TCATGA	2 cut(s)	667, 1054
BspLI	GGNNCC	1 cut(s)	864
BspMAI	CTGCAG	1 cut(s)	1108
BspPI	GGATC	2 cut(s)	73, 1010
BspQI	GCTCTTC	2 cut(s)	480, 900
BsrDI	GCAATG	1 cut(s)	1129
BsrI	ACTGG	2 cut(s)	159, 191
BssECI	CCNNGG	4 cut(s)	373, 517, 592, 925
BssMI	GATC	6 cut(s)	30, 65, 321, 684, 695, 1002
BssT1I	CCWWGG	3 cut(s)	373, 592, 925
Bst2UI	CCWGG	2 cut(s)	24, 518
Bst4CI	ACNGT	3 cut(s)	39, 397, 1087
Bst6I	CTCTTC	2 cut(s)	480, 900
BstC8I	GCNNGC	1 cut(s)	932
BstDEI	CTNAG	3 cut(s)	149, 487, 885
BstDSI	CCRYGG	1 cut(s)	592
BstF5I	GGATG	2 cut(s)	588, 1184
BstKTI	GATC	6 cut(s)	33, 68, 324, 687, 698, 1005
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	6 cut(s)	30, 65, 321, 684, 695, 1002
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 479
BstNI	CCWGG	2 cut(s)	24, 518
BstNSI	RCATGY	2 cut(s)	53, 730
BstSCI	CCNGG	2 cut(s)	22, 516
BstSFI	CTRYAG	1 cut(s)	1104
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	2 cut(s)	65, 1002
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstYI	RGATCY	2 cut(s)	65, 1002
BsuI	GTATCC	1 cut(s)	1056
BsuRI	GGCC	4 cut(s)	190, 779, 863, 1145
BtgI	CCRYGG	1 cut(s)	592
BtsCI	GGATG	2 cut(s)	588, 1184
Cac8I	GCNNGC	1 cut(s)	932
CaiI	CAGNNNCTG	1 cut(s)	1005
CciI	TCATGA	2 cut(s)	667, 1054
Cfr13I	GGNCC	1 cut(s)	862
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	9 cut(s)	50, 62, 255, 593, 668, 727, 956, 1055, 1072
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	3 cut(s)	149, 487, 885
DpnI	GATC	6 cut(s)	32, 67, 323, 686, 697, 1004
DpnII	GATC	6 cut(s)	30, 65, 321, 684, 695, 1002
DraIII	CACNNNGTG	1 cut(s)	455
EaeI	YGGCCR	2 cut(s)	188, 1143
Eam1104I	CTCTTC	2 cut(s)	480, 900
EarI	CTCTTC	2 cut(s)	480, 900
EciI	GGCGGA	1 cut(s)	552
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	3 cut(s)	373, 592, 925
Eco147I	AGGCCT	1 cut(s)	779
Eco24I	GRGCYC	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	862
EcoRII	CCWGG	2 cut(s)	22, 516
EcoT14I	CCWWGG	3 cut(s)	373, 592, 925
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	3 cut(s)	373, 592, 925
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	9 cut(s)	53, 65, 258, 596, 671, 730, 959, 1058, 1075
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	9 cut(s)	49, 61, 254, 592, 667, 726, 955, 1054, 1071
FauNDI	CATATG	1 cut(s)	627
FbaI	TGATCA	2 cut(s)	30, 684
Fnu4HI	GCNGC	3 cut(s)	333, 447, 1143
FokI	GGATG	2 cut(s)	575, 1171
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	3 cut(s)	333, 447, 1143
GluI	GCNGC	3 cut(s)	333, 447, 1143
GsuI	CTGGAG	3 cut(s)	176, 357, 1133
HaeIII	GGCC	4 cut(s)	190, 779, 863, 1145
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	9 cut(s)	53, 65, 258, 596, 671, 730, 959, 1058, 1075
HincII	GTYRAC	1 cut(s)	997
HindII	GTYRAC	1 cut(s)	997
HinfI	GANTC	7 cut(s)	339, 385, 499, 821, 1058, 1115, 1125
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	3 cut(s)	56, 590, 643
Hpy166II	GTNNAC	5 cut(s)	47, 99, 146, 997, 1154
Hpy188I	TCNGA	6 cut(s)	133, 326, 412, 490, 657, 859
Hpy188III	TCNNGA	8 cut(s)	219, 311, 503, 606, 668, 788, 1055, 1188
Hpy8I	GTNNAC	5 cut(s)	47, 99, 146, 997, 1154
HpyAV	CCTTC	2 cut(s)	569, 883
HpyCH4III	ACNGT	3 cut(s)	39, 397, 1087
HpyCH4V	TGCA	5 cut(s)	392, 461, 815, 942, 1106
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 479
HpyF3I	CTNAG	3 cut(s)	149, 487, 885
Hsp92II	CATG	9 cut(s)	53, 65, 258, 596, 671, 730, 959, 1058, 1075
Kpn2I	TCCGGA	1 cut(s)	218
Ksp22I	TGATCA	2 cut(s)	30, 684
Kzo9I	GATC	6 cut(s)	30, 65, 321, 684, 695, 1002
LguI	GCTCTTC	2 cut(s)	480, 900
LmnI	GCTCC	2 cut(s)	157, 939
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	781
MaeIII	GTNAC	2 cut(s)	880, 1099
MalI	GATC	6 cut(s)	32, 67, 323, 686, 697, 1004
MboI	GATC	6 cut(s)	30, 65, 321, 684, 695, 1002
MboII	GAAGA	4 cut(s)	308, 467, 634, 917
MflI	RGATCY	2 cut(s)	65, 1002
MhlI	GDGCHC	3 cut(s)	22, 162, 475
MlsI	TGGCCA	1 cut(s)	190
MluCI	AATT	3 cut(s)	609, 783, 836
MluNI	TGGCCA	1 cut(s)	190
MlyI	GAGTC	4 cut(s)	348, 379, 508, 1124
MnlI	CCTC	7 cut(s)	94, 262, 307, 725, 759, 853, 1008
Mox20I	TGGCCA	1 cut(s)	190
MroI	TCCGGA	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	4 cut(s)	204, 782, 810, 1136
Msp20I	TGGCCA	1 cut(s)	190
MspA1I	CMGCKG	1 cut(s)	1142
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	2 cut(s)	24, 518
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	2 cut(s)	24, 518
MwoI	GCNNNNNNNGC	2 cut(s)	80, 479
NcoI	CCATGG	1 cut(s)	592
NdeI	CATATG	1 cut(s)	627
NdeII	GATC	6 cut(s)	30, 65, 321, 684, 695, 1002
NlaIII	CATG	9 cut(s)	53, 65, 258, 596, 671, 730, 959, 1058, 1075
NlaIV	GGNNCC	1 cut(s)	864
NspI	RCATGY	2 cut(s)	53, 730
PagI	TCATGA	2 cut(s)	667, 1054
PceI	AGGCCT	1 cut(s)	779
PciSI	GCTCTTC	2 cut(s)	480, 900
PctI	GAATGC	1 cut(s)	461
PfeI	GAWTC	3 cut(s)	821, 1058, 1125
PkrI	GCNGC	3 cut(s)	334, 448, 1144
PleI	GAGTC	4 cut(s)	347, 379, 507, 1123
PpsI	GAGTC	4 cut(s)	347, 379, 507, 1123
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	22, 516
PspGI	CCWGG	2 cut(s)	22, 516
PspN4I	GGNNCC	1 cut(s)	864
PspPI	GGNCC	1 cut(s)	862
PstI	CTGCAG	1 cut(s)	1108
PstNI	CAGNNNCTG	1 cut(s)	1005
PsuI	RGATCY	2 cut(s)	65, 1002
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	162
SapI	GCTCTTC	2 cut(s)	480, 900
SaqAI	TTAA	4 cut(s)	204, 782, 810, 1136
SatI	GCNGC	3 cut(s)	333, 447, 1143
Sau3AI	GATC	6 cut(s)	30, 65, 321, 684, 695, 1002
Sau96I	GGNCC	1 cut(s)	862
SchI	GAGTC	4 cut(s)	348, 379, 508, 1124
ScrFI	CCNGG	2 cut(s)	24, 518
SduI	GDGCHC	3 cut(s)	22, 162, 475
SfaNI	GCATC	1 cut(s)	781
SfcI	CTRYAG	1 cut(s)	1104
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	3 cut(s)	609, 783, 836
SseBI	AGGCCT	1 cut(s)	779
SsiI	CCGC	3 cut(s)	447, 537, 1142
SstI	GAGCTC	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	779
StyD4I	CCNGG	2 cut(s)	22, 516
StyI	CCWWGG	3 cut(s)	373, 592, 925
TaaI	ACNGT	3 cut(s)	39, 397, 1087
TasI	AATT	3 cut(s)	609, 783, 836
TauI	GCSGC	2 cut(s)	449, 1145
TfiI	GAWTC	3 cut(s)	821, 1058, 1125
Tru1I	TTAA	4 cut(s)	204, 782, 810, 1136
Tru9I	TTAA	4 cut(s)	204, 782, 810, 1136
TseI	GCWGC	1 cut(s)	332
TspDTI	ATGAA	9 cut(s)	50, 354, 656, 684, 885, 935, 1043, 1060, 1173
XceI	RCATGY	2 cut(s)	53, 730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.