Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0004691

Physical Location & Seq

Genomic Coordinates Reverse (-)

29732977 .. 29737145

Gene Structure 4169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1220700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAAGTGAAAGCAAGAGCTCCTGGAAAAATCATACTCTCGGGTGAACATGCTGTCGTTCATGGATCAACGGCGGTGGCGTCGTCCATTGACCTCTACACCTACGTCTCTCTTCGCTTTCCCACTCCCTCTGATAATGATGATGCACTAAGGCTCCAGCTCAAGGATATTGGATTAGAGTTTTCATGGCCTATTGGTAGGATAAAAGAAGTCCTATCAGAATTAGATATTCCCAACTCATCAGTTCCAACCTCATGTTCAACGGAGTCGATTAAATCACTTGCTGCTTTGGTTGATGAACTGAACATTCCAGAGGCAAAAATTGGACTTGGTGCTGGAGTGGTGGCTTTTCTTTGGCTATATGCATCTATCCAAGGATTTAAGCCTGCTACTGTTGTTATCACTTCAGAACTTCCGTTGGGCTCAGGCCTGGGATCATCTGCTGCATTATGCGTTGCACTCTCGGGTGCTCTTCTTTCTTTCTCAGATTGTGTAAGTCTGGATTTGGGCCACAAAGAGTGGACTACTTTTGGGGAAAGTGAACTTGAATTGCTGAACAAATGGGCTTTTGAAGGTGAGAAGATCATCCATGGAAAGCCGTCTGGAATTGACAATACAGTTAGCACATACGGCAATATGATCAAATTCAGATCAGGTAGTCTGACTCGCATCAAATCGAACATGACACTCAAAATGCTTATTACCAACACAAAAGTTGGGAGGAACACGAAGGCCTTAGTCGCTGGTGTTTCGGAGAGAACTTTAAGGCATCCGGAGGCCATGGCTTCTGTGTTTAATGCAGTCGATTCTATCAGCACGGAAGTGGCTAGCATCATCCAATCGCCCGCCCCCGATGATCTCTCCATTACTGAGAAGGAAGCGAAAATAGAAGAGTTAATGGAAATGAATCAAGGTTTGCTCCAATGTATGGGGGTCAGCCATGCTTCAATTGAAACCGTTCTTCAAACAACGCTGAAATACAAGTTAGCTTCCAAGTTGACCGGAGCTGGGGGCGGAGGTTGTGTTCTCACACTACTGCCAACCTTGCTATCAGGAACTGTTGTTGATAAAGTAACTTCTGAACTGGAGTCTTGTGGATTCCATTGTTTGACGTCCGCCATTGGTGGAAACGGAGTCGAAATTCGCTTCGGCGGTTCGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

388

Amino Acids

40.9

Weight (kDa)

5.38

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	125 - 211	7.4e-11	GHMP kinases N terminal domain
GHMP_kinases_C	PF08544	295 - 347	7.4e-07	GHMP kinases C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27450 AT5G27450 AT5G27450
fragaria_vesca	FvH4_6g05650 FvH4_6g05650
malus_domestica	MD04G1206900.v1.1 MD12G1220700.v1.1
prunus_persica	Prupe.6G327600_v2.0.a1
pyrus_communis	pycom04g18290 pycom12g20650
rosa_chinensis	RchiOBHm_Chr3g0454501 RchiOBHm_Chr7g0220931
rosa_laevigata	RLG00000002188 RLG00000002192 RLG00000025439
rosa_multiflora	Rmu_sc0002105.1_g000027 Rmu_sc0007209.1_g000003 Rmu_sc0026738.1_g000003
rosa_roxburghii	Rroxscaffold_6G00425020 Rroxscaffold_6G00425040
rosa_rugosa	Rorug03G0000100 Rorug07G0198300
rosa_samantha	Rh3AG059300 Rh3BG061400 Rh3CG060200 Rh3DG061100 Rh7DG337500
rosa_wichuraiana	Rw0G017160 Rw0G017190 Rw3G004600 Rw7G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1115
AccB7I	CCANNNNNTGG	1 cut(s)	928
AccIII	TCCGGA	1 cut(s)	772
AciI	CCGC	5 cut(s)	74, 846, 1014, 1116, 1152
AclWI	GGATC	2 cut(s)	73, 442
AcsI	RAATTY	2 cut(s)	644, 1140
AcuI	CTGAAG	1 cut(s)	390
AcyI	GRCGYC	2 cut(s)	80, 1112
AfiI	CCNNNNNNNGG	3 cut(s)	163, 928, 1008
AgsI	TTSAA	6 cut(s)	261, 548, 572, 948, 953, 965
AjnI	CCWGG	2 cut(s)	22, 429
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AleI	CACNNNNGTG	1 cut(s)	821
AloI	GAACNNNNNNTCC	2 cut(s)	1008, 1040
AluBI	AGCT	4 cut(s)	20, 160, 989, 1007
AluI	AGCT	4 cut(s)	20, 160, 989, 1007
Alw21I	GWGCWC	2 cut(s)	22, 472
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	2 cut(s)	73, 442
AlwNI	CAGNNNCTG	1 cut(s)	1058
Ama87I	CYCGRG	2 cut(s)	40, 463
Aor13HI	TCCGGA	1 cut(s)	772
AoxI	GGCC	5 cut(s)	188, 427, 508, 732, 777
ApeKI	GCWGC	2 cut(s)	284, 443
ApoI	RAATTY	2 cut(s)	644, 1140
Asp700I	GAANNNNTTC	1 cut(s)	957
AspS9I	GGNCC	1 cut(s)	508
AsuHPI	GGTGA	2 cut(s)	56, 587
AsuNHI	GCTAGC	1 cut(s)	827
AvaI	CYCGRG	2 cut(s)	40, 463
BanII	GRGCYC	2 cut(s)	22, 425
Bbv12I	GWGCWC	2 cut(s)	22, 472
BbvI	GCAGC	2 cut(s)	271, 430
BceAI	ACGGC	3 cut(s)	87, 583, 646
BciT130I	CCWGG	2 cut(s)	24, 431
BclI	TGATCA	1 cut(s)	639
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	828
BisI	GCNGC	2 cut(s)	285, 444
BlsI	GCNGC	2 cut(s)	286, 445
Bme1390I	CCNGG	2 cut(s)	24, 431
BmeT110I	CYCGRG	2 cut(s)	40, 463
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	2 cut(s)	24, 431
BmsI	GCATC	5 cut(s)	133, 374, 678, 778, 840
BmtI	GCTAGC	1 cut(s)	831
BpmI	CTGGAG	3 cut(s)	140, 357, 1106
Bpu10I	CCTNAGC	1 cut(s)	424
BpuEI	CTTGAG	1 cut(s)	146
BsaHI	GRCGYC	2 cut(s)	80, 1112
BsaJI	CCNNGG	4 cut(s)	373, 430, 589, 780
BsaWI	WCCGGW	2 cut(s)	772, 1001
BsaXI	ACNNNNNCTCC	4 cut(s)	138, 168, 1008, 1038
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 928, 1008
Bse1I	ACTGG	1 cut(s)	1089
BseAI	TCCGGA	1 cut(s)	772
BseBI	CCWGG	2 cut(s)	24, 431
BseDI	CCNNGG	4 cut(s)	373, 430, 589, 780
BseGI	GGATG	3 cut(s)	585, 769, 834
BseLI	CCNNNNNNNGG	3 cut(s)	163, 928, 1008
BseMII	CTCAG	3 cut(s)	438, 498, 861
BseNI	ACTGG	1 cut(s)	1089
BseXI	GCAGC	2 cut(s)	271, 430
BseYI	CCCAGC	1 cut(s)	1007
BshFI	GGCC	5 cut(s)	190, 429, 510, 734, 779
BsiHKAI	GWGCWC	2 cut(s)	22, 472
BsiHKCI	CYCGRG	2 cut(s)	40, 463
BsiSI	CCGG	2 cut(s)	773, 1002
BslI	CCNNNNNNNGG	3 cut(s)	163, 928, 1008
BsmAI	GTCTC	1 cut(s)	112
BsmBI	CGTCTC	1 cut(s)	112
BsnI	GGCC	5 cut(s)	190, 429, 510, 734, 779
BsoBI	CYCGRG	2 cut(s)	40, 463
Bsp1286I	GDGCHC	3 cut(s)	22, 425, 472
Bsp13I	TCCGGA	1 cut(s)	772
Bsp143I	GATC	6 cut(s)	65, 434, 582, 639, 650, 856
Bsp19I	CCATGG	2 cut(s)	589, 780
BspACI	CCGC	5 cut(s)	74, 846, 1014, 1116, 1152
BspANI	GGCC	5 cut(s)	190, 429, 510, 734, 779
BspCNI	CTCAG	3 cut(s)	437, 497, 862
BspEI	TCCGGA	1 cut(s)	772
BspLI	GGNNCC	1 cut(s)	155
BspOI	GCTAGC	1 cut(s)	831
BspPI	GGATC	2 cut(s)	73, 442
BspQI	GCTCTTC	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	1089
BssECI	CCNNGG	4 cut(s)	373, 430, 589, 780
BssMI	GATC	6 cut(s)	65, 434, 582, 639, 650, 856
BssNI	GRCGYC	2 cut(s)	80, 1112
BssT1I	CCWWGG	3 cut(s)	373, 589, 780
Bst2UI	CCWGG	2 cut(s)	24, 431
Bst4CI	ACNGT	4 cut(s)	394, 619, 958, 1060
Bst6I	CTCTTC	3 cut(s)	117, 477, 885
BstACI	GRCGYC	2 cut(s)	80, 1112
BstC8I	GCNNGC	3 cut(s)	387, 829, 846
BstDEI	CTNAG	5 cut(s)	149, 424, 484, 736, 870
BstDSI	CCRYGG	2 cut(s)	589, 780
BstF5I	GGATG	3 cut(s)	585, 769, 834
BstKTI	GATC	6 cut(s)	68, 437, 585, 642, 653, 859
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	6 cut(s)	65, 434, 582, 639, 650, 856
BstMWI	GCNNNNNNNGC	3 cut(s)	630, 740, 1045
BstNI	CCWGG	2 cut(s)	24, 431
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	22, 429
BstV1I	GCAGC	2 cut(s)	271, 430
BsuRI	GGCC	5 cut(s)	190, 429, 510, 734, 779
BtgI	CCRYGG	2 cut(s)	589, 780
BtsCI	GGATG	3 cut(s)	585, 769, 834
Cac8I	GCNNGC	3 cut(s)	387, 829, 846
CaiI	CAGNNNCTG	1 cut(s)	1058
Cfr13I	GGNCC	1 cut(s)	508
CseI	GACGC	1 cut(s)	69
CspCI	CAANNNNNGTGG	2 cut(s)	57, 92
CviAII	CATG	8 cut(s)	50, 62, 186, 255, 590, 682, 781, 941
DdeI	CTNAG	5 cut(s)	149, 424, 484, 736, 870
DpnI	GATC	6 cut(s)	67, 436, 584, 641, 652, 858
DpnII	GATC	6 cut(s)	65, 434, 582, 639, 650, 856
Eam1104I	CTCTTC	3 cut(s)	117, 477, 885
EarI	CTCTTC	3 cut(s)	117, 477, 885
EciI	GGCGGA	2 cut(s)	1029, 1105
Ecl136II	GAGCTC	1 cut(s)	20
Eco130I	CCWWGG	3 cut(s)	373, 589, 780
Eco147I	AGGCCT	2 cut(s)	429, 734
Eco24I	GRGCYC	2 cut(s)	22, 425
Eco53kI	GAGCTC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	390
Eco88I	CYCGRG	2 cut(s)	40, 463
EcoICRI	GAGCTC	1 cut(s)	20
EcoRII	CCWGG	2 cut(s)	22, 429
EcoT14I	CCWWGG	3 cut(s)	373, 589, 780
EcoT22I	ATGCAT	1 cut(s)	367
EcoT38I	GRGCYC	2 cut(s)	22, 425
ErhI	CCWWGG	3 cut(s)	373, 589, 780
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	8 cut(s)	53, 65, 189, 258, 593, 685, 784, 944
FatI	CATG	8 cut(s)	49, 61, 185, 254, 589, 681, 780, 940
FauI	CCCGC	1 cut(s)	853
FbaI	TGATCA	1 cut(s)	639
Fnu4HI	GCNGC	2 cut(s)	285, 444
FokI	GGATG	3 cut(s)	572, 756, 821
FriOI	GRGCYC	2 cut(s)	22, 425
Fsp4HI	GCNGC	2 cut(s)	285, 444
FspBI	CTAG	1 cut(s)	828
GluI	GCNGC	2 cut(s)	285, 444
GsaI	CCCAGC	1 cut(s)	1011
GsuI	CTGGAG	3 cut(s)	140, 357, 1106
HaeIII	GGCC	5 cut(s)	190, 429, 510, 734, 779
HapII	CCGG	2 cut(s)	773, 1002
HgaI	GACGC	1 cut(s)	69
Hin1I	GRCGYC	2 cut(s)	80, 1112
Hin1II	CATG	8 cut(s)	53, 65, 189, 258, 593, 685, 784, 944
HincII	GTYRAC	1 cut(s)	999
HindII	GTYRAC	1 cut(s)	999
HinfI	GANTC	7 cut(s)	266, 664, 806, 907, 1088, 1098, 1134
HpaII	CCGG	2 cut(s)	773, 1002
HphI	GGTGA	2 cut(s)	56, 587
Hpy166II	GTNNAC	4 cut(s)	47, 522, 542, 999
Hpy188I	TCNGA	8 cut(s)	133, 220, 409, 487, 650, 663, 754, 1081
Hpy188III	TCNNGA	5 cut(s)	311, 500, 603, 773, 1053
Hpy8I	GTNNAC	4 cut(s)	47, 522, 542, 999
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	3 cut(s)	566, 724, 868
HpyCH4III	ACNGT	4 cut(s)	394, 619, 958, 1060
HpyCH4IV	ACGT	2 cut(s)	105, 1112
HpyCH4V	TGCA	5 cut(s)	146, 365, 446, 458, 800
HpyF10VI	GCNNNNNNNGC	3 cut(s)	630, 740, 1045
HpyF3I	CTNAG	5 cut(s)	149, 424, 484, 736, 870
HpySE526I	ACGT	2 cut(s)	105, 1112
Hsp92I	GRCGYC	2 cut(s)	80, 1112
Hsp92II	CATG	8 cut(s)	53, 65, 189, 258, 593, 685, 784, 944
Kpn2I	TCCGGA	1 cut(s)	772
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	6 cut(s)	65, 434, 582, 639, 650, 856
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	4 cut(s)	25, 159, 924, 1004
Lsp1109I	GCAGC	2 cut(s)	271, 430
LweI	GCATC	5 cut(s)	133, 374, 678, 778, 840
MaeI	CTAG	1 cut(s)	828
MaeII	ACGT	2 cut(s)	105, 1112
MaeIII	GTNAC	1 cut(s)	1072
MalI	GATC	6 cut(s)	67, 436, 584, 641, 652, 858
MboI	GATC	6 cut(s)	65, 434, 582, 639, 650, 856
MboII	GAAGA	5 cut(s)	104, 464, 592, 902, 953
MfeI	CAATTG	1 cut(s)	948
MhlI	GDGCHC	3 cut(s)	22, 425, 472
MluCI	AATT	7 cut(s)	221, 321, 548, 606, 644, 948, 1140
MlyI	GAGTC	4 cut(s)	275, 658, 1097, 1143
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	7 cut(s)	104, 139, 262, 307, 714, 769, 1010
Mph1103I	ATGCAT	1 cut(s)	367
MroI	TCCGGA	1 cut(s)	772
MroXI	GAANNNNTTC	1 cut(s)	957
MseI	TTAA	5 cut(s)	273, 381, 764, 795, 896
MslI	CAYNNNNRTG	1 cut(s)	821
MspI	CCGG	2 cut(s)	773, 1002
MspR9I	CCNGG	2 cut(s)	24, 431
MunI	CAATTG	1 cut(s)	948
MvaI	CCWGG	2 cut(s)	24, 431
MwoI	GCNNNNNNNGC	3 cut(s)	630, 740, 1045
NcoI	CCATGG	2 cut(s)	589, 780
NdeII	GATC	6 cut(s)	65, 434, 582, 639, 650, 856
NheI	GCTAGC	1 cut(s)	827
NlaIII	CATG	8 cut(s)	53, 65, 189, 258, 593, 685, 784, 944
NlaIV	GGNNCC	1 cut(s)	155
NsiI	ATGCAT	1 cut(s)	367
NspI	RCATGY	1 cut(s)	53
OliI	CACNNNNGTG	1 cut(s)	821
PceI	AGGCCT	2 cut(s)	429, 734
PciSI	GCTCTTC	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	957
PfeI	GAWTC	3 cut(s)	806, 907, 1098
PflMI	CCANNNNNTGG	1 cut(s)	928
PfoI	TCCNGGA	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	286, 445
PleI	GAGTC	4 cut(s)	274, 658, 1096, 1142
PpsI	GAGTC	4 cut(s)	274, 658, 1096, 1142
Psp124BI	GAGCTC	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	22, 429
PspFI	CCCAGC	1 cut(s)	1007
PspGI	CCWGG	2 cut(s)	22, 429
PspN4I	GGNNCC	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	508
PstNI	CAGNNNCTG	1 cut(s)	1058
RseI	CAYNNNNRTG	1 cut(s)	821
SacI	GAGCTC	1 cut(s)	22
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	5 cut(s)	273, 381, 764, 795, 896
SatI	GCNGC	2 cut(s)	285, 444
Sau3AI	GATC	6 cut(s)	65, 434, 582, 639, 650, 856
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	4 cut(s)	275, 658, 1097, 1143
ScrFI	CCNGG	2 cut(s)	24, 431
SduI	GDGCHC	3 cut(s)	22, 425, 472
SfaNI	GCATC	5 cut(s)	133, 374, 678, 778, 840
SmiMI	CAYNNNNRTG	1 cut(s)	821
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	7 cut(s)	221, 321, 548, 606, 644, 948, 1140
SseBI	AGGCCT	2 cut(s)	429, 734
SsiI	CCGC	5 cut(s)	74, 846, 1014, 1116, 1152
SspMI	CTAG	1 cut(s)	828
SstI	GAGCTC	1 cut(s)	22
StuI	AGGCCT	2 cut(s)	429, 734
StyD4I	CCNGG	2 cut(s)	22, 429
StyI	CCWWGG	3 cut(s)	373, 589, 780
TaaI	ACNGT	4 cut(s)	394, 619, 958, 1060
TaiI	ACGT	2 cut(s)	108, 1115
TaqI	TCGA	4 cut(s)	269, 677, 804, 1137
TasI	AATT	7 cut(s)	221, 321, 548, 606, 644, 948, 1140
TfiI	GAWTC	3 cut(s)	806, 907, 1098
Tru1I	TTAA	5 cut(s)	273, 381, 764, 795, 896
Tru9I	TTAA	5 cut(s)	273, 381, 764, 795, 896
TseI	GCWGC	2 cut(s)	284, 443
TspDTI	ATGAA	4 cut(s)	50, 174, 312, 920
TspGWI	ACGGA	4 cut(s)	278, 405, 833, 1146
Van91I	CCANNNNNTGG	1 cut(s)	928
XapI	RAATTY	2 cut(s)	644, 1140
XceI	RCATGY	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	957
XspI	CTAG	1 cut(s)	828
ZraI	GACGTC	1 cut(s)	1113
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.