Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004691

Physical Location & Seq

Genomic Coordinates Reverse (-)

46061896 .. 46065682

Gene Structure 3787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00425020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAAGTGAAAGCCAGAGCACCTGGGAAGGTCATACTGTCTGGTGAACATGCTGTGGTTCATGGATCTACGGCCGTCGCTGCCTCCATTGACCTCTGTACCTATGCAACTCTTCGCTTTCCCGCTCATTCTGATAATGATGGTTTACTTAGTCTGGAGCTCAAGGATATTGGATTAGAGTTTTCGTGGCCAGTTGTTAGGATTAAGGAAGCACTATCCGGAATAGATGTTCCCAACCCATCAACACCTACCTCTTGTCCGGCGGAGGCGATCAAATCACTTGCTATTTTAGTTGAAGAACTAAACATTCCAGAGGCAAAAATCGGAATTGCTGCTGGAGTCTTGGCTTTTCTTTGGCTATATTCATCTATCCAAGGATTTAAGCCTGCGACAGTTATTATCAGTTCAGAACTTCCTTTGGGTTCAGGTCTTGGTTCATCTGCCGCACTTTGTGTTGCATTCTCTGGTGCTCTTCTTGCTTACTCAGATTGTGCAAGTCTGGATTTCAGCCACCAAGGGTGGTTAGATTTTGGCGAAAGTGAACTTGACTTACTGAATAAATGGGCATTTGAAGGTGAGAAAATCATCCATGGAAGGCCATCTGGAATTGACAACACAGTCAGCACATATGGTAATATGATCAAGTTTAGATCAGGCAGTTTGACACGCCTCAAATCTAATATGCCACTCAAAATGCTCATTACTAACACAAAAGTTGGGAGGAACACAAAGGCCTTAGTTGCTGGTGTTTCAGAGAGGACATTAAATCATCCAGATGCTATGGCTTCTGTGTTTAACGCAGTTGATTCTATCAGCGTGGAATTGGCTACCATCATCCAATCAGAGGCCCCTGATGAAATCTCTGTAACCAAAAAGGAGGCGAAAATAGAAGAGCTGATGGAAATGAACCAAGGTTTGCTTCAATGCATGGGGGTCAGCCATGCTTCAATTGAAACCATTCTTCGAACTACACTCAAATACAAGTTGGCTTCCAAGTTGACAGGAGCTGGTGGTGGAGGTTGTGTTCTCACACTACTGCCAACCTTGCTATCAGCAATAGTTGTTGATAAAGTAACTGCAGAACTGGAGTCCTGTGGATTCCATTGCTTAACAGCGGCCATTGGTGGACAAGGTGTTCAAGTTTGCTTTGGTGGTTCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

387

Amino Acids

40.71

Weight (kDa)

5.45

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	125 - 211	1.1e-09	GHMP kinases N terminal domain
GHMP_kinases_C	PF08544	295 - 348	2.9e-07	GHMP kinases C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27450 AT5G27450 AT5G27450
fragaria_vesca	FvH4_6g05650 FvH4_6g05650
malus_domestica	MD04G1206900.v1.1 MD12G1220700.v1.1
prunus_persica	Prupe.6G327600_v2.0.a1
pyrus_communis	pycom04g18290 pycom12g20650
rosa_chinensis	RchiOBHm_Chr3g0454501 RchiOBHm_Chr7g0220931
rosa_laevigata	RLG00000002188 RLG00000002192 RLG00000025439
rosa_multiflora	Rmu_sc0002105.1_g000027 Rmu_sc0007209.1_g000003 Rmu_sc0026738.1_g000003
rosa_roxburghii	Rroxscaffold_6G00425020 Rroxscaffold_6G00425040
rosa_rugosa	Rorug03G0000100 Rorug07G0198300
rosa_samantha	Rh3AG059300 Rh3BG061400 Rh3CG060200 Rh3DG061100 Rh7DG337500
rosa_wichuraiana	Rw0G017160 Rw0G017190 Rw3G004600 Rw7G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	617
AccBSI	CCGCTC	1 cut(s)	125
AccIII	TCCGGA	1 cut(s)	218
AciI	CCGC	4 cut(s)	123, 263, 444, 1115
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	3 cut(s)	72, 188, 1116
AdeI	CACNNNGTG	1 cut(s)	452
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	844
AgsI	TTSAA	6 cut(s)	296, 572, 923, 948, 953, 1139
AjnI	CCWGG	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	2 cut(s)	903, 935
AloI	GAACNNNNNNTCC	6 cut(s)	213, 245, 1008, 1040, 1119, 1151
AluBI	AGCT	3 cut(s)	160, 895, 1007
AluI	AGCT	3 cut(s)	160, 895, 1007
Alw21I	GWGCWC	3 cut(s)	22, 162, 472
AlwI	GGATC	1 cut(s)	73
AlwNI	CAGNNNCTG	1 cut(s)	1007
Aor13HI	TCCGGA	1 cut(s)	218
AoxI	GGCC	6 cut(s)	72, 188, 596, 732, 846, 1116
ApeKI	GCWGC	2 cut(s)	80, 332
Asp700I	GAANNNNTTC	1 cut(s)	957
AspS9I	GGNCC	1 cut(s)	847
AsuHPI	GGTGA	2 cut(s)	56, 587
AsuII	TTCGAA	1 cut(s)	964
BaeI	ACNNNNGTAYC	2 cut(s)	82, 115
BalI	TGGCCA	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	3 cut(s)	22, 162, 472
BbvI	GCAGC	2 cut(s)	67, 319
BccI	CCATC	5 cut(s)	134, 247, 607, 839, 892
BceAI	ACGGC	2 cut(s)	59, 87
BciT130I	CCWGG	1 cut(s)	24
BclI	TGATCA	1 cut(s)	639
BfmI	CTRYAG	1 cut(s)	1077
BisI	GCNGC	4 cut(s)	81, 333, 444, 1116
BlsI	GCNGC	4 cut(s)	82, 334, 445, 1117
Bme1390I	CCNGG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	847
BmiI	GGNNCC	1 cut(s)	849
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	766
BpmI	CTGGAG	3 cut(s)	176, 357, 1106
Bpu14I	TTCGAA	1 cut(s)	964
BpuEI	CTTGAG	1 cut(s)	146
BsaJI	CCNNGG	5 cut(s)	23, 373, 514, 589, 910
BsaWI	WCCGGW	1 cut(s)	218
BsaXI	ACNNNNNCTCC	2 cut(s)	1008, 1038
Bsc4I	CCNNNNNNNGG	1 cut(s)	844
Bse1I	ACTGG	2 cut(s)	191, 1089
Bse3DI	GCAATG	1 cut(s)	1102
BseAI	TCCGGA	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	5 cut(s)	23, 373, 514, 589, 910
BseGI	GGATG	4 cut(s)	585, 769, 834, 1157
BseLI	CCNNNNNNNGG	1 cut(s)	844
BseMI	GCAATG	1 cut(s)	1102
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	2 cut(s)	191, 1089
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	67, 319
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	6 cut(s)	74, 190, 598, 734, 848, 1118
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	3 cut(s)	22, 162, 472
BsiSI	CCGG	2 cut(s)	219, 260
BslI	CCNNNNNNNGG	1 cut(s)	844
BsmI	GAATGC	1 cut(s)	458
BsnI	GGCC	6 cut(s)	74, 190, 598, 734, 848, 1118
Bsp119I	TTCGAA	1 cut(s)	964
Bsp1286I	GDGCHC	3 cut(s)	22, 162, 472
Bsp13I	TCCGGA	1 cut(s)	218
Bsp143I	GATC	4 cut(s)	65, 270, 639, 650
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	4 cut(s)	123, 263, 444, 1115
BspANI	GGCC	6 cut(s)	74, 190, 598, 734, 848, 1118
BspCNI	CTCAG	1 cut(s)	497
BspEI	TCCGGA	1 cut(s)	218
BspLI	GGNNCC	1 cut(s)	849
BspMAI	CTGCAG	1 cut(s)	1081
BspPI	GGATC	1 cut(s)	73
BspQI	GCTCTTC	2 cut(s)	477, 885
BspT104I	TTCGAA	1 cut(s)	964
BsrBI	CCGCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	1102
BsrI	ACTGG	2 cut(s)	191, 1089
BssECI	CCNNGG	5 cut(s)	23, 373, 514, 589, 910
BssMI	GATC	4 cut(s)	65, 270, 639, 650
BssT1I	CCWWGG	4 cut(s)	373, 514, 589, 910
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	3 cut(s)	39, 394, 619
Bst6I	CTCTTC	3 cut(s)	117, 477, 885
BstBI	TTCGAA	1 cut(s)	964
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	3 cut(s)	149, 484, 736
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	4 cut(s)	585, 769, 834, 1157
BstKTI	GATC	4 cut(s)	68, 273, 642, 653
BstMBI	GATC	4 cut(s)	65, 270, 639, 650
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 476, 740, 1045
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	1077
BstV1I	GCAGC	2 cut(s)	67, 319
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	6 cut(s)	74, 190, 598, 734, 848, 1118
BtgI	CCRYGG	1 cut(s)	589
BtsCI	GGATG	4 cut(s)	585, 769, 834, 1157
Cac8I	GCNNGC	1 cut(s)	387
CaiI	CAGNNNCTG	1 cut(s)	1007
Cfr13I	GGNCC	1 cut(s)	847
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	5 cut(s)	50, 62, 590, 928, 941
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	3 cut(s)	149, 484, 736
DpnI	GATC	4 cut(s)	67, 272, 641, 652
DpnII	GATC	4 cut(s)	65, 270, 639, 650
DraIII	CACNNNGTG	1 cut(s)	452
DrdI	GACNNNNNNGTC	1 cut(s)	617
DseDI	GACNNNNNNGTC	1 cut(s)	617
EaeI	YGGCCR	3 cut(s)	72, 188, 1116
EagI	CGGCCG	1 cut(s)	72
Eam1104I	CTCTTC	3 cut(s)	117, 477, 885
EarI	CTCTTC	3 cut(s)	117, 477, 885
EciI	GGCGGA	1 cut(s)	278
Ecl136II	GAGCTC	1 cut(s)	160
EclXI	CGGCCG	1 cut(s)	72
Eco130I	CCWWGG	4 cut(s)	373, 514, 589, 910
Eco147I	AGGCCT	1 cut(s)	734
Eco24I	GRGCYC	1 cut(s)	162
Eco52I	CGGCCG	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	847
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	4 cut(s)	373, 514, 589, 910
EcoT22I	ATGCAT	1 cut(s)	929
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	4 cut(s)	373, 514, 589, 910
FaeI	CATG	5 cut(s)	53, 65, 593, 931, 944
FalI	AAGNNNNNCTT	2 cut(s)	903, 935
FatI	CATG	5 cut(s)	49, 61, 589, 927, 940
FauI	CCCGC	1 cut(s)	130
FauNDI	CATATG	1 cut(s)	628
FbaI	TGATCA	1 cut(s)	639
Fnu4HI	GCNGC	4 cut(s)	81, 333, 444, 1116
FokI	GGATG	4 cut(s)	572, 756, 821, 1144
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	4 cut(s)	81, 333, 444, 1116
GluI	GCNGC	4 cut(s)	81, 333, 444, 1116
GsuI	CTGGAG	3 cut(s)	176, 357, 1106
HaeIII	GGCC	6 cut(s)	74, 190, 598, 734, 848, 1118
HapII	CCGG	2 cut(s)	219, 260
Hin1II	CATG	5 cut(s)	53, 65, 593, 931, 944
HincII	GTYRAC	1 cut(s)	999
HindII	GTYRAC	1 cut(s)	999
HinfI	GANTC	4 cut(s)	339, 806, 1088, 1098
HpaII	CCGG	2 cut(s)	219, 260
HphI	GGTGA	2 cut(s)	56, 587
Hpy166II	GTNNAC	5 cut(s)	47, 146, 542, 999, 1127
Hpy188I	TCNGA	6 cut(s)	133, 326, 409, 487, 754, 844
Hpy188III	TCNNGA	7 cut(s)	155, 219, 311, 500, 603, 773, 1161
Hpy8I	GTNNAC	5 cut(s)	47, 146, 542, 999, 1127
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	22, 566, 588
HpyCH4III	ACNGT	3 cut(s)	39, 394, 619
HpyCH4V	TGCA	5 cut(s)	107, 458, 494, 927, 1079
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 476, 740, 1045
HpyF3I	CTNAG	3 cut(s)	149, 484, 736
Hsp92II	CATG	5 cut(s)	53, 65, 593, 931, 944
Kpn2I	TCCGGA	1 cut(s)	218
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	4 cut(s)	65, 270, 639, 650
LguI	GCTCTTC	2 cut(s)	477, 885
LmnI	GCTCC	2 cut(s)	157, 1004
Lsp1109I	GCAGC	2 cut(s)	67, 319
LweI	GCATC	1 cut(s)	766
MaeIII	GTNAC	2 cut(s)	865, 1072
MalI	GATC	4 cut(s)	67, 272, 641, 652
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	4 cut(s)	65, 270, 639, 650
MboII	GAAGA	5 cut(s)	104, 308, 464, 902, 953
MfeI	CAATTG	1 cut(s)	948
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	3 cut(s)	22, 162, 472
MlsI	TGGCCA	1 cut(s)	190
MluCI	AATT	4 cut(s)	327, 606, 821, 948
MluNI	TGGCCA	1 cut(s)	190
MlyI	GAGTC	2 cut(s)	348, 1097
Mox20I	TGGCCA	1 cut(s)	190
Mph1103I	ATGCAT	1 cut(s)	929
MroI	TCCGGA	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	957
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	5 cut(s)	204, 381, 764, 795, 1109
MslI	CAYNNNNRTG	1 cut(s)	774
Msp20I	TGGCCA	1 cut(s)	190
MspA1I	CMGCKG	1 cut(s)	1115
MspI	CCGG	2 cut(s)	219, 260
MspR9I	CCNGG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	948
Mva1269I	GAATGC	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	4 cut(s)	80, 476, 740, 1045
NcoI	CCATGG	1 cut(s)	589
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	4 cut(s)	65, 270, 639, 650
NlaIII	CATG	5 cut(s)	53, 65, 593, 931, 944
NlaIV	GGNNCC	1 cut(s)	849
NsiI	ATGCAT	1 cut(s)	929
NspI	RCATGY	1 cut(s)	53
NspV	TTCGAA	1 cut(s)	964
PceI	AGGCCT	1 cut(s)	734
PciSI	GCTCTTC	2 cut(s)	477, 885
PctI	GAATGC	1 cut(s)	458
PdmI	GAANNNNTTC	1 cut(s)	957
PfeI	GAWTC	2 cut(s)	806, 1098
PkrI	GCNGC	4 cut(s)	82, 334, 445, 1117
PleI	GAGTC	2 cut(s)	347, 1096
PpsI	GAGTC	2 cut(s)	347, 1096
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	849
PspPI	GGNCC	1 cut(s)	847
PsrI	GAACNNNNNNTAC	2 cut(s)	534, 566
PstI	CTGCAG	1 cut(s)	1081
PstNI	CAGNNNCTG	1 cut(s)	1007
PsuI	RGATCY	1 cut(s)	65
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	774
SacI	GAGCTC	1 cut(s)	162
SapI	GCTCTTC	2 cut(s)	477, 885
SaqAI	TTAA	5 cut(s)	204, 381, 764, 795, 1109
SatI	GCNGC	4 cut(s)	81, 333, 444, 1116
Sau3AI	GATC	4 cut(s)	65, 270, 639, 650
Sau96I	GGNCC	1 cut(s)	847
SchI	GAGTC	2 cut(s)	348, 1097
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	3 cut(s)	22, 162, 472
SfaNI	GCATC	1 cut(s)	766
SfcI	CTRYAG	1 cut(s)	1077
SfuI	TTCGAA	1 cut(s)	964
SmiMI	CAYNNNNRTG	1 cut(s)	774
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	4 cut(s)	327, 606, 821, 948
SseBI	AGGCCT	1 cut(s)	734
SsiI	CCGC	4 cut(s)	123, 263, 444, 1115
SstI	GAGCTC	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	734
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	4 cut(s)	373, 514, 589, 910
TaaI	ACNGT	3 cut(s)	39, 394, 619
TaqI	TCGA	1 cut(s)	964
TasI	AATT	4 cut(s)	327, 606, 821, 948
TauI	GCSGC	2 cut(s)	446, 1118
TfiI	GAWTC	2 cut(s)	806, 1098
Tru1I	TTAA	5 cut(s)	204, 381, 764, 795, 1109
Tru9I	TTAA	5 cut(s)	204, 381, 764, 795, 1109
TseI	GCWGC	2 cut(s)	80, 332
TspDTI	ATGAA	6 cut(s)	50, 354, 426, 870, 920, 1146
XceI	RCATGY	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	957
Zsp2I	ATGCAT	1 cut(s)	929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.