Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004691

Physical Location & Seq

Genomic Coordinates Forward (+)

3221027 .. 3225017

Gene Structure 3991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g05650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAAGTCAAAGCCAGAGCACCTGGGAAGATCATACTCTCTGGTGAGCATGCTGTGGTTCATGGATCTACGGCCATCGCTGCCTCCATTGACCTCTGTACCTATGCCACTCTTCGCTTTCCCGCTCATTCTGATAATGATGGTTTACTTAGACTGGAACTCAAAGATATTGGATTAGAGTTTTCATGGCCAGTTGGTAGGATTAAAGAAGCATTATCTGGAATAGATGTTCCCAACCCATCAACACCCACCTCATGTCCAGCTGAGGCGATCAAATCACTTGCTATTTTAGTTGAAGAACTAAACATCCCAGAGGCAAAAATTGGAATTGCTGCTGGAGTGTTGGCTTTTCTTTGGCTGTATTCATCTATCCAAGGATTTAAGCCTGCAACAGTTATTATCTCTTCAGAACTTCCATTGGGTTCAGGTCTTGGTTCATCTGCCGCACTTTGTGTTGCGTTCTCTGGTGCTCTTCTTGCTTTCTCAGATTGTGCAAGTCTGGATTTGGGCCACCAAGGGTGGTTAGATTTTGGAGAAAGTGAACTTGACTTGCTGAATAAATGGGCATTTGAAGGTGAAAAAATCCTCCATGGGAAGCCATCTGGAATTGACAACACAGTTAGCACATATGGGAATATGATCAAGTTTAGATCAGGCAGTTTGACTCGCCTCAAATCGAACATGCCACTCAAAATGCTCATTACTAACACAAAAGTTGGGAGGAACACAAAGGCCTTAGTTGCTGGTGTTTCAGAGAGGACATTAAGACATCCAGATGCTATGACTTCTGTGTTTAGCGCAGTTGACTCTATCAGCAGGGAATTGGCTACCATCATCCAATCAGAGGCTTCTGATGAAATCTGTGTAACTGAGAAGGAGGCGAAAATAGAAGAGCTGATGGAAATGAACCAAGGTTTGCTCCAATGCATGGGAGTCAGCCATGCTTCAATTGAAACCGTTCTTCGGACTACACTCAAATACAAGTTGGCTTCCAAGTTGACAGGAGCTGGTGGTGGAGGGTGTGTTCTGACACTATTGCCAACCTTGCTATCAGCAACAGTTGTTGACAAAGTAACTGCAGAACTGGAGTCATGTGGATTCCATTGCTTAACAGCGGCCATTGGTGGACAAGGTGTTCAAGTTTGCTTTGGTGGTTCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

388

Amino Acids

40.74

Weight (kDa)

5.57

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	125 - 211	4.3e-10	GHMP kinases N terminal domain
GHMP_kinases_C	PF08544	295 - 352	4.6e-07	GHMP kinases C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27450 AT5G27450 AT5G27450
fragaria_vesca	FvH4_6g05650 FvH4_6g05650
malus_domestica	MD04G1206900.v1.1 MD12G1220700.v1.1
prunus_persica	Prupe.6G327600_v2.0.a1
pyrus_communis	pycom04g18290 pycom12g20650
rosa_chinensis	RchiOBHm_Chr3g0454501 RchiOBHm_Chr7g0220931
rosa_laevigata	RLG00000002188 RLG00000002192 RLG00000025439
rosa_multiflora	Rmu_sc0002105.1_g000027 Rmu_sc0007209.1_g000003 Rmu_sc0026738.1_g000003
rosa_roxburghii	Rroxscaffold_6G00425020 Rroxscaffold_6G00425040
rosa_rugosa	Rorug03G0000100 Rorug07G0198300
rosa_samantha	Rh3AG059300 Rh3BG061400 Rh3CG060200 Rh3DG061100 Rh7DG337500
rosa_wichuraiana	Rw0G017160 Rw0G017190 Rw3G004600 Rw7G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	928
AccBSI	CCGCTC	1 cut(s)	125
AciI	CCGC	3 cut(s)	123, 444, 1115
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	3 cut(s)	72, 188, 1116
AcuI	CTGAAG	1 cut(s)	390
AdeI	CACNNNGTG	1 cut(s)	452
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	3 cut(s)	844, 928, 963
AgsI	TTSAA	5 cut(s)	296, 572, 948, 953, 1139
AjnI	CCWGG	1 cut(s)	22
AloI	GAACNNNNNNTCC	8 cut(s)	213, 245, 291, 323, 1008, 1040, 1119, 1151
AluBI	AGCT	3 cut(s)	263, 895, 1007
AluI	AGCT	3 cut(s)	263, 895, 1007
Alw21I	GWGCWC	2 cut(s)	22, 472
AlwI	GGATC	1 cut(s)	73
AlwNI	CAGNNNCTG	1 cut(s)	1007
AoxI	GGCC	5 cut(s)	72, 188, 508, 732, 1116
ApeKI	GCWGC	2 cut(s)	80, 332
Asp700I	GAANNNNTTC	1 cut(s)	957
AspLEI	GCGC	1 cut(s)	800
AspS9I	GGNCC	1 cut(s)	508
AsuHPI	GGTGA	2 cut(s)	56, 587
BaeI	ACNNNNGTAYC	2 cut(s)	82, 115
BalI	TGGCCA	1 cut(s)	190
Bbv12I	GWGCWC	2 cut(s)	22, 472
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	67, 319
BccI	CCATC	6 cut(s)	83, 134, 247, 607, 839, 892
BceAI	ACGGC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	24
BclI	TGATCA	1 cut(s)	639
BfmI	CTRYAG	1 cut(s)	1077
BisI	GCNGC	4 cut(s)	81, 333, 444, 1116
BlsI	GCNGC	4 cut(s)	82, 334, 445, 1117
Bme1390I	CCNGG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	508
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	766
BpmI	CTGGAG	2 cut(s)	357, 1106
Bpu10I	CCTNAGC	1 cut(s)	264
BsaJI	CCNNGG	5 cut(s)	23, 373, 514, 589, 910
BsaXI	ACNNNNNCTCC	2 cut(s)	1008, 1038
Bsc4I	CCNNNNNNNGG	3 cut(s)	844, 928, 963
Bse1I	ACTGG	3 cut(s)	159, 191, 1089
Bse3DI	GCAATG	1 cut(s)	1102
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	5 cut(s)	23, 373, 514, 589, 910
BseGI	GGATG	3 cut(s)	306, 769, 834
BseLI	CCNNNNNNNGG	3 cut(s)	844, 928, 963
BseMI	GCAATG	1 cut(s)	1102
BseMII	CTCAG	3 cut(s)	255, 498, 861
BseNI	ACTGG	3 cut(s)	159, 191, 1089
BseXI	GCAGC	2 cut(s)	67, 319
BshFI	GGCC	5 cut(s)	74, 190, 510, 734, 1118
BsiHKAI	GWGCWC	2 cut(s)	22, 472
BslI	CCNNNNNNNGG	3 cut(s)	844, 928, 963
BsnI	GGCC	5 cut(s)	74, 190, 510, 734, 1118
Bsp1286I	GDGCHC	2 cut(s)	22, 472
Bsp143I	GATC	5 cut(s)	30, 65, 270, 639, 650
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	3 cut(s)	123, 444, 1115
BspANI	GGCC	5 cut(s)	74, 190, 510, 734, 1118
BspCNI	CTCAG	3 cut(s)	256, 497, 862
BspHI	TCATGA	1 cut(s)	1160
BspMAI	CTGCAG	1 cut(s)	1081
BspPI	GGATC	1 cut(s)	73
BspQI	GCTCTTC	2 cut(s)	477, 885
BsrBI	CCGCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	1102
BsrI	ACTGG	3 cut(s)	159, 191, 1089
BssECI	CCNNGG	5 cut(s)	23, 373, 514, 589, 910
BssMI	GATC	5 cut(s)	30, 65, 270, 639, 650
BssT1I	CCWWGG	4 cut(s)	373, 514, 589, 910
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	4 cut(s)	394, 619, 958, 1060
Bst6I	CTCTTC	4 cut(s)	117, 409, 477, 885
BstC8I	GCNNGC	2 cut(s)	51, 387
BstDEI	CTNAG	5 cut(s)	149, 264, 484, 736, 870
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	3 cut(s)	306, 769, 834
BstHHI	GCGC	1 cut(s)	800
BstKTI	GATC	5 cut(s)	33, 68, 273, 642, 653
BstMBI	GATC	5 cut(s)	30, 65, 270, 639, 650
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 476, 740, 1045
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	2 cut(s)	53, 685
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	1077
BstV1I	GCAGC	2 cut(s)	67, 319
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BsuRI	GGCC	5 cut(s)	74, 190, 510, 734, 1118
BtgI	CCRYGG	1 cut(s)	589
BtgZI	GCGATG	1 cut(s)	61
BtsCI	GGATG	3 cut(s)	306, 769, 834
Cac8I	GCNNGC	2 cut(s)	51, 387
CaiI	CAGNNNCTG	1 cut(s)	1007
CciI	TCATGA	1 cut(s)	1160
CfoI	GCGC	1 cut(s)	800
Cfr13I	GGNCC	1 cut(s)	508
Csp6I	GTAC	1 cut(s)	99
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	5 cut(s)	149, 264, 484, 736, 870
DpnI	GATC	5 cut(s)	32, 67, 272, 641, 652
DpnII	GATC	5 cut(s)	30, 65, 270, 639, 650
DraIII	CACNNNGTG	1 cut(s)	452
EaeI	YGGCCR	3 cut(s)	72, 188, 1116
Eam1104I	CTCTTC	4 cut(s)	117, 409, 477, 885
EarI	CTCTTC	4 cut(s)	117, 409, 477, 885
Eco130I	CCWWGG	4 cut(s)	373, 514, 589, 910
Eco147I	AGGCCT	1 cut(s)	734
Eco57I	CTGAAG	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	4 cut(s)	373, 514, 589, 910
EcoT22I	ATGCAT	1 cut(s)	929
ErhI	CCWWGG	4 cut(s)	373, 514, 589, 910
FauI	CCCGC	1 cut(s)	130
FauNDI	CATATG	1 cut(s)	628
FbaI	TGATCA	1 cut(s)	639
Fnu4HI	GCNGC	4 cut(s)	81, 333, 444, 1116
FokI	GGATG	3 cut(s)	293, 756, 821
Fsp4HI	GCNGC	4 cut(s)	81, 333, 444, 1116
GlaI	GCGC	1 cut(s)	799
GluI	GCNGC	4 cut(s)	81, 333, 444, 1116
GsuI	CTGGAG	2 cut(s)	357, 1106
HaeIII	GGCC	5 cut(s)	74, 190, 510, 734, 1118
HhaI	GCGC	1 cut(s)	800
Hin6I	GCGC	1 cut(s)	798
HinP1I	GCGC	1 cut(s)	798
HincII	GTYRAC	3 cut(s)	805, 999, 1066
HindII	GTYRAC	3 cut(s)	805, 999, 1066
HinfI	GANTC	5 cut(s)	664, 806, 933, 1088, 1098
HphI	GGTGA	2 cut(s)	56, 587
Hpy166II	GTNNAC	6 cut(s)	146, 542, 805, 999, 1066, 1127
Hpy188I	TCNGA	8 cut(s)	133, 409, 487, 754, 844, 853, 966, 1029
Hpy188III	TCNNGA	5 cut(s)	219, 500, 603, 773, 1161
Hpy8I	GTNNAC	6 cut(s)	146, 542, 805, 999, 1066, 1127
HpyAV	CCTTC	2 cut(s)	566, 868
HpyCH4III	ACNGT	4 cut(s)	394, 619, 958, 1060
HpyCH4V	TGCA	4 cut(s)	389, 494, 927, 1079
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 476, 740, 1045
HpyF3I	CTNAG	5 cut(s)	149, 264, 484, 736, 870
HspAI	GCGC	1 cut(s)	798
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	5 cut(s)	30, 65, 270, 639, 650
LguI	GCTCTTC	2 cut(s)	477, 885
LmnI	GCTCC	2 cut(s)	924, 1004
Lsp1109I	GCAGC	2 cut(s)	67, 319
LweI	GCATC	1 cut(s)	766
MaeIII	GTNAC	2 cut(s)	865, 1072
MalI	GATC	5 cut(s)	32, 67, 272, 641, 652
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	5 cut(s)	30, 65, 270, 639, 650
MboII	GAAGA	7 cut(s)	40, 104, 308, 396, 464, 902, 953
MfeI	CAATTG	1 cut(s)	948
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	2 cut(s)	22, 472
MlsI	TGGCCA	1 cut(s)	190
MluCI	AATT	5 cut(s)	321, 327, 606, 821, 948
MluNI	TGGCCA	1 cut(s)	190
MlyI	GAGTC	4 cut(s)	658, 800, 942, 1097
Mox20I	TGGCCA	1 cut(s)	190
Mph1103I	ATGCAT	1 cut(s)	929
MroXI	GAANNNNTTC	1 cut(s)	957
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	4 cut(s)	204, 381, 764, 1109
MslI	CAYNNNNRTG	1 cut(s)	774
Msp20I	TGGCCA	1 cut(s)	190
MspA1I	CMGCKG	2 cut(s)	263, 1115
MspR9I	CCNGG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	948
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	4 cut(s)	80, 476, 740, 1045
NcoI	CCATGG	1 cut(s)	589
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	5 cut(s)	30, 65, 270, 639, 650
NsiI	ATGCAT	1 cut(s)	929
NspI	RCATGY	2 cut(s)	53, 685
PaeI	GCATGC	1 cut(s)	53
PagI	TCATGA	1 cut(s)	1160
PceI	AGGCCT	1 cut(s)	734
PciSI	GCTCTTC	2 cut(s)	477, 885
PdmI	GAANNNNTTC	1 cut(s)	957
PfeI	GAWTC	1 cut(s)	1098
PflMI	CCANNNNNTGG	1 cut(s)	928
PkrI	GCNGC	4 cut(s)	82, 334, 445, 1117
PleI	GAGTC	4 cut(s)	658, 800, 941, 1096
PpsI	GAGTC	4 cut(s)	658, 800, 941, 1096
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	508
PstI	CTGCAG	1 cut(s)	1081
PstNI	CAGNNNCTG	1 cut(s)	1007
PsuI	RGATCY	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	774
SapI	GCTCTTC	2 cut(s)	477, 885
SaqAI	TTAA	4 cut(s)	204, 381, 764, 1109
SatI	GCNGC	4 cut(s)	81, 333, 444, 1116
Sau3AI	GATC	5 cut(s)	30, 65, 270, 639, 650
Sau96I	GGNCC	1 cut(s)	508
SchI	GAGTC	4 cut(s)	658, 800, 942, 1097
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	2 cut(s)	22, 472
SfaNI	GCATC	1 cut(s)	766
SfcI	CTRYAG	1 cut(s)	1077
SmiMI	CAYNNNNRTG	1 cut(s)	774
SphI	GCATGC	1 cut(s)	53
Sse9I	AATT	5 cut(s)	321, 327, 606, 821, 948
SseBI	AGGCCT	1 cut(s)	734
SsiI	CCGC	3 cut(s)	123, 444, 1115
StuI	AGGCCT	1 cut(s)	734
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	4 cut(s)	373, 514, 589, 910
TaaI	ACNGT	4 cut(s)	394, 619, 958, 1060
TaqI	TCGA	1 cut(s)	677
TasI	AATT	5 cut(s)	321, 327, 606, 821, 948
TauI	GCSGC	2 cut(s)	446, 1118
TfiI	GAWTC	1 cut(s)	1098
Tru1I	TTAA	4 cut(s)	204, 381, 764, 1109
Tru9I	TTAA	4 cut(s)	204, 381, 764, 1109
TseI	GCWGC	2 cut(s)	80, 332
TspDTI	ATGAA	7 cut(s)	50, 174, 354, 426, 870, 920, 1146
Van91I	CCANNNNNTGG	1 cut(s)	928
XceI	RCATGY	2 cut(s)	53, 685
XmnI	GAANNNNTTC	1 cut(s)	957
Zsp2I	ATGCAT	1 cut(s)	929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.