Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004691

Physical Location & Seq

Genomic Coordinates Forward (+)

41862213 .. 41865076

Gene Structure 2864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19773

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGAAGTAAAAGCCAGAGCAGTTGGAAAGATCATACTGTTTGGTGAACATGCTGTGGTTCATGGATCTACTGCCGTCTCTGCCTCCATTGACCTGTGTACCTATGCCACTCTTTGCTTGCCCGCTCATTCTGATAATAATGGTTTACTTAGACTGGAGCCCAAGGATATTGGATTAGAGTTTCTGTGGCCAGATATTGGATTAGAGTTTCTGTGGCCAGTTGGTAGGATTAAGGAAGCACTATCCGGAATAGATGTTCCCAACCCATCAACACCTACCTCATGTCCAGCAGAGGTGAACAAATCACTTGCTATTTTAGTTGAAGAACTAAACATTCTAGAGGCAAAGATCGGAATAGCTGCTGGAGTCTGGGCTTTTCTTTGGCTATGTTCATCTATCCAAGGGTATGGGACTGTGCCTGCAACAGTTATTATCAGTTCGGAACTTCCTTTGGGTTCAGGTCTTGGTTTATCTGCCGCACTTTGTGTTGCATTCTCTGGTGCTCTTCTTGCTTACTCAGATTATGCGAGTCTAGATTTCAGCCACCAGGGGTGGTTAGATTTTGGCGGAAGCGAACTTGACTTGCTGAATAAATGGGCATTTGAAGGTGAAAAAATCATCCATGGAAAGCCATCTGGAATTGACAACACAGCACATATGTTGATAGATAAAGGAATAGGCGAAAAGATGTTATCATCTGTTGAGATATTTAGCTTCCTTATCTGTCTGAACTTTGTTCATGAAACGGGAAATATGATCAAGTTTAGATCAGGCAGTTTGACACGCCTCAAATCAAACATGCCACTCAAAATGCTCATCACTAACACAAAAGTTGGGAGGAACACAAAGGCCTTAGTTGCTGGTGTTTCAGAGAGGACATTGAGGCATCCAGATTCCAAATGCTATGGCTTCTGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

306

Amino Acids

32.89

Weight (kDa)

5.91

Isoelectric Point (pI)

30.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	137 - 218	1e-07	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27450 AT5G27450 AT5G27450
fragaria_vesca	FvH4_6g05650 FvH4_6g05650
malus_domestica	MD04G1206900.v1.1 MD12G1220700.v1.1
prunus_persica	Prupe.6G327600_v2.0.a1
pyrus_communis	pycom04g18290 pycom12g20650
rosa_chinensis	RchiOBHm_Chr3g0454501 RchiOBHm_Chr7g0220931
rosa_laevigata	RLG00000002188 RLG00000002192 RLG00000025439
rosa_multiflora	Rmu_sc0002105.1_g000027 Rmu_sc0007209.1_g000003 Rmu_sc0026738.1_g000003
rosa_roxburghii	Rroxscaffold_6G00425020 Rroxscaffold_6G00425040
rosa_rugosa	Rorug03G0000100 Rorug07G0198300
rosa_samantha	Rh3AG059300 Rh3BG061400 Rh3CG060200 Rh3DG061100 Rh7DG337500
rosa_wichuraiana	Rw0G017160 Rw0G017190 Rw3G004600 Rw7G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	197
AccBSI	CCGCTC	1 cut(s)	125
AccIII	TCCGGA	1 cut(s)	245
AciI	CCGC	3 cut(s)	123, 477, 567
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	2 cut(s)	188, 215
AdeI	CACNNNGTG	1 cut(s)	485
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	323, 605
AjnI	CCWGG	1 cut(s)	546
AloI	GAACNNNNNNTCC	2 cut(s)	240, 272
AluBI	AGCT	2 cut(s)	359, 714
AluI	AGCT	2 cut(s)	359, 714
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	73
Aor13HI	TCCGGA	1 cut(s)	245
AoxI	GGCC	3 cut(s)	188, 215, 849
ApeKI	GCWGC	1 cut(s)	359
AsuHPI	GGTGA	3 cut(s)	56, 307, 620
BaeI	ACNNNNGTAYC	2 cut(s)	82, 115
BalI	TGGCCA	2 cut(s)	190, 217
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	2 cut(s)	274, 640
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	548
BclI	TGATCA	1 cut(s)	756
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	2 cut(s)	338, 533
BisI	GCNGC	2 cut(s)	360, 477
BlsI	GCNGC	2 cut(s)	361, 478
Bme1390I	CCNGG	1 cut(s)	548
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	548
BmsI	GCATC	1 cut(s)	895
BpmI	CTGGAG	2 cut(s)	176, 384
BsaJI	CCNNGG	4 cut(s)	162, 400, 547, 622
BsaWI	WCCGGW	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	2 cut(s)	159, 218
BseAI	TCCGGA	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	4 cut(s)	162, 400, 547, 622
BseGI	GGATG	2 cut(s)	618, 886
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	2 cut(s)	159, 218
BseXI	GCAGC	1 cut(s)	346
BshFI	GGCC	3 cut(s)	190, 217, 851
BsiHKAI	GWGCWC	1 cut(s)	505
BsiSI	CCGG	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	424
BsmI	GAATGC	1 cut(s)	491
BsnI	GGCC	3 cut(s)	190, 217, 851
Bsp1286I	GDGCHC	2 cut(s)	162, 505
Bsp13I	TCCGGA	1 cut(s)	245
Bsp143I	GATC	5 cut(s)	30, 65, 348, 756, 767
Bsp19I	CCATGG	1 cut(s)	622
BspACI	CCGC	3 cut(s)	123, 477, 567
BspANI	GGCC	3 cut(s)	190, 217, 851
BspCNI	CTCAG	1 cut(s)	530
BspEI	TCCGGA	1 cut(s)	245
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	73
BspQI	GCTCTTC	1 cut(s)	510
BsrBI	CCGCTC	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	159, 218
BssECI	CCNNGG	4 cut(s)	162, 400, 547, 622
BssMI	GATC	5 cut(s)	30, 65, 348, 756, 767
BssT1I	CCWWGG	3 cut(s)	162, 400, 622
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	3 cut(s)	39, 415, 427
Bst6I	CTCTTC	1 cut(s)	510
BstC8I	GCNNGC	3 cut(s)	119, 123, 420
BstDEI	CTNAG	3 cut(s)	149, 517, 853
BstDSI	CCRYGG	1 cut(s)	622
BstF5I	GGATG	2 cut(s)	618, 886
BstKTI	GATC	5 cut(s)	33, 68, 351, 759, 770
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	5 cut(s)	30, 65, 348, 756, 767
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 509, 857
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	2 cut(s)	53, 802
BstSCI	CCNGG	1 cut(s)	546
BstV1I	GCAGC	1 cut(s)	346
BstX2I	RGATCY	1 cut(s)	65
BstXI	CCANNNNNNTGG	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	65
BsuRI	GGCC	3 cut(s)	190, 217, 851
BtgI	CCRYGG	1 cut(s)	622
BtsCI	GGATG	2 cut(s)	618, 886
Cac8I	GCNNGC	3 cut(s)	119, 123, 420
CciI	TCATGA	1 cut(s)	739
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	6 cut(s)	50, 62, 282, 623, 740, 799
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	3 cut(s)	149, 517, 853
DpnI	GATC	5 cut(s)	32, 67, 350, 758, 769
DpnII	GATC	5 cut(s)	30, 65, 348, 756, 767
DraIII	CACNNNGTG	1 cut(s)	485
EaeI	YGGCCR	2 cut(s)	188, 215
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
EciI	GGCGGA	1 cut(s)	582
Eco130I	CCWWGG	3 cut(s)	162, 400, 622
Eco147I	AGGCCT	1 cut(s)	851
Eco24I	GRGCYC	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	3 cut(s)	162, 400, 622
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	3 cut(s)	162, 400, 622
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	6 cut(s)	53, 65, 285, 626, 743, 802
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	6 cut(s)	49, 61, 281, 622, 739, 798
FauI	CCCGC	1 cut(s)	130
FauNDI	CATATG	1 cut(s)	657
FbaI	TGATCA	1 cut(s)	756
Fnu4HI	GCNGC	2 cut(s)	360, 477
FokI	GGATG	2 cut(s)	605, 873
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	2 cut(s)	360, 477
FspBI	CTAG	2 cut(s)	338, 533
GluI	GCNGC	2 cut(s)	360, 477
GsuI	CTGGAG	2 cut(s)	176, 384
HaeIII	GGCC	3 cut(s)	190, 217, 851
HapII	CCGG	1 cut(s)	246
Hin1II	CATG	6 cut(s)	53, 65, 285, 626, 743, 802
HinfI	GANTC	3 cut(s)	366, 529, 893
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	3 cut(s)	56, 307, 620
Hpy166II	GTNNAC	4 cut(s)	47, 99, 146, 298
Hpy188I	TCNGA	6 cut(s)	133, 353, 442, 520, 729, 871
Hpy188III	TCNNGA	6 cut(s)	246, 338, 533, 636, 740, 890
Hpy8I	GTNNAC	4 cut(s)	47, 99, 146, 298
HpyAV	CCTTC	1 cut(s)	599
HpyCH4III	ACNGT	3 cut(s)	39, 415, 427
HpyCH4V	TGCA	2 cut(s)	422, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 509, 857
HpyF3I	CTNAG	3 cut(s)	149, 517, 853
Hsp92II	CATG	6 cut(s)	53, 65, 285, 626, 743, 802
Kpn2I	TCCGGA	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	756
Kzo9I	GATC	5 cut(s)	30, 65, 348, 756, 767
LguI	GCTCTTC	1 cut(s)	510
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	1 cut(s)	895
MaeI	CTAG	2 cut(s)	338, 533
MalI	GATC	5 cut(s)	32, 67, 350, 758, 769
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	5 cut(s)	30, 65, 348, 756, 767
MboII	GAAGA	2 cut(s)	335, 497
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	2 cut(s)	162, 505
MlsI	TGGCCA	2 cut(s)	190, 217
MluCI	AATT	1 cut(s)	639
MluNI	TGGCCA	2 cut(s)	190, 217
MlyI	GAGTC	2 cut(s)	375, 538
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	8 cut(s)	94, 286, 289, 334, 797, 831, 867, 876
Mox20I	TGGCCA	2 cut(s)	190, 217
MroI	TCCGGA	1 cut(s)	245
MscI	TGGCCA	2 cut(s)	190, 217
MseI	TTAA	2 cut(s)	231, 919
Msp20I	TGGCCA	2 cut(s)	190, 217
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	548
Mva1269I	GAATGC	1 cut(s)	491
MvaI	CCWGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	3 cut(s)	80, 509, 857
NcoI	CCATGG	1 cut(s)	622
NdeI	CATATG	1 cut(s)	657
NdeII	GATC	5 cut(s)	30, 65, 348, 756, 767
NlaIII	CATG	6 cut(s)	53, 65, 285, 626, 743, 802
NlaIV	GGNNCC	1 cut(s)	159
NspI	RCATGY	2 cut(s)	53, 802
PagI	TCATGA	1 cut(s)	739
PceI	AGGCCT	1 cut(s)	851
PciSI	GCTCTTC	1 cut(s)	510
PctI	GAATGC	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	893
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	361, 478
PleI	GAGTC	2 cut(s)	374, 537
PpsI	GAGTC	2 cut(s)	374, 537
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	65
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	510
SaqAI	TTAA	2 cut(s)	231, 919
SatI	GCNGC	2 cut(s)	360, 477
Sau3AI	GATC	5 cut(s)	30, 65, 348, 756, 767
SchI	GAGTC	2 cut(s)	375, 538
ScrFI	CCNGG	1 cut(s)	548
SduI	GDGCHC	2 cut(s)	162, 505
SetI	ASST	9 cut(s)	96, 104, 277, 281, 297, 361, 463, 610, 716
SfaNI	GCATC	1 cut(s)	895
Sse9I	AATT	1 cut(s)	639
SseBI	AGGCCT	1 cut(s)	851
SsiI	CCGC	3 cut(s)	123, 477, 567
SspMI	CTAG	2 cut(s)	338, 533
StuI	AGGCCT	1 cut(s)	851
StyD4I	CCNGG	1 cut(s)	546
StyI	CCWWGG	3 cut(s)	162, 400, 622
TaaI	ACNGT	3 cut(s)	39, 415, 427
TasI	AATT	1 cut(s)	639
TauI	GCSGC	1 cut(s)	479
TfiI	GAWTC	1 cut(s)	893
Tru1I	TTAA	2 cut(s)	231, 919
Tru9I	TTAA	2 cut(s)	231, 919
TseI	GCWGC	1 cut(s)	359
TspDTI	ATGAA	4 cut(s)	50, 381, 728, 756
Van91I	CCANNNNNTGG	1 cut(s)	197
XbaI	TCTAGA	2 cut(s)	337, 532
XceI	RCATGY	2 cut(s)	53, 802
XspI	CTAG	2 cut(s)	338, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.