Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004691

Physical Location & Seq

Genomic Coordinates Reverse (-)

46071390 .. 46075547

Gene Structure 4158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00425040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGTGTACATGTCTCAAAACGACTTCAACATGGCTGAAATTTTGAGAGGTCCTGAACAAGATGTTTCGGGGCGTGTAAGCAGGCTGATCTGCACAGGAACTAGCGCAGGGGCAGCGCACGGGGATATAGATAATAATGGTTTACTTAGACTGGAGCTCACCGATATTGGATTAGAGTTTTTGTGGCCAGTTGGTAGGATTAAAGAAGCATTATCCGGAATAGATGTTCCCAACCCATCAACACCTACCTCTTGTCCAGCGGAAGCGATCAAATCACTTGCTATTGAAGAACTAAATATTCCAGAGGCAAAAATCGGAATTGCTGCTGGAGTCTTGGCTTTTCTTTGGCTATATTCATCTATCCAAGGGCATGGGACTCTGTTTGGAACTTCCTTAGGTCTTGGGTCATCTGCTGCACTTTGTGTTGCATTCTCTGGTGCTCTTCTTGCTTACTCAGATTGTGTGAGTCTGGATTTCAGCCACCAAGGGTGGATTCTTGAATTATATAGTTCTTGGAATGATTCAGGGAATATGATCAAGTTTAGATCAGGCAGTTTGACACGCCTCAAATCGAACATGCCACTCAAAATGCTCATTACTAACACAAAAGTTGGGTGGAACACAAAGGCCTTAGTTGCTGGTGTTACAGAGAGGACATTAAGGCATCCAGATGCTATGGCTTCTGTGTTTAATGCAGTTGATTCTATCAGCGCGGAATTGGCTACCATCATCCAATTAGAGGCCCCTGATGAAATCTCTGTAACCGAGAAGGATGCGAAAATAGAAGAGCTGATGGAAATGAACCAAGGTTTGCTCCAATGCATGAGGGTCAGCCATGCTTCAATCAAAACCATTCTTCGAACTACACTCAAATACAAGTTGGCTTCCAAGTTGACAGGAGCTCGTGGTGGAGGTTCTGTTCTCACACTATTGCCAACCTTGCTATCAGCAACAGTTGTTGATAAAGTAACTGCAGAACTGGAGTCGTGTGGATTCCATTGCTTAACAGCGGCCATTGGTGGACAAGGTGTTCAAGTTTGCTTTGGTGGTTCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

352

Amino Acids

37.37

Weight (kDa)

5.45

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27450 AT5G27450 AT5G27450
fragaria_vesca	FvH4_6g05650 FvH4_6g05650
malus_domestica	MD04G1206900.v1.1 MD12G1220700.v1.1
prunus_persica	Prupe.6G327600_v2.0.a1
pyrus_communis	pycom04g18290 pycom12g20650
rosa_chinensis	RchiOBHm_Chr3g0454501 RchiOBHm_Chr7g0220931
rosa_laevigata	RLG00000002188 RLG00000002192 RLG00000025439
rosa_multiflora	Rmu_sc0002105.1_g000027 Rmu_sc0007209.1_g000003 Rmu_sc0026738.1_g000003
rosa_roxburghii	Rroxscaffold_6G00425020 Rroxscaffold_6G00425040
rosa_rugosa	Rorug03G0000100 Rorug07G0198300
rosa_samantha	Rh3AG059300 Rh3BG061400 Rh3CG060200 Rh3DG061100 Rh7DG337500
rosa_wichuraiana	Rw0G017160 Rw0G017190 Rw3G004600 Rw7G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	713
AccIII	TCCGGA	1 cut(s)	215
AciI	CCGC	3 cut(s)	260, 713, 1010
AcoI	YGGCCR	2 cut(s)	185, 1011
AcsI	RAATTY	1 cut(s)	39
AdeI	CACNNNGTG	1 cut(s)	422
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	739
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	5 cut(s)	28, 287, 500, 843, 1034
AjuI	GAANNNNNNNTTGG	2 cut(s)	477, 509
AloI	GAACNNNNNNTCC	6 cut(s)	210, 242, 903, 935, 1014, 1046
AluBI	AGCT	3 cut(s)	157, 790, 902
AluI	AGCT	3 cut(s)	157, 790, 902
Alw21I	GWGCWC	3 cut(s)	159, 442, 904
Alw26I	GTCTC	1 cut(s)	18
Aor13HI	TCCGGA	1 cut(s)	215
AoxI	GGCC	4 cut(s)	185, 627, 741, 1011
ApeKI	GCWGC	3 cut(s)	113, 323, 413
ApoI	RAATTY	1 cut(s)	39
AspLEI	GCGC	3 cut(s)	107, 118, 713
AspS9I	GGNCC	2 cut(s)	50, 742
AsuHPI	GGTGA	1 cut(s)	151
AsuII	TTCGAA	1 cut(s)	859
AvaII	GGWCC	1 cut(s)	50
AxyI	CCTNAGG	1 cut(s)	394
BalI	TGGCCA	1 cut(s)	187
BanII	GRGCYC	2 cut(s)	159, 904
BauI	CACGAG	1 cut(s)	903
Bbv12I	GWGCWC	3 cut(s)	159, 442, 904
BbvI	GCAGC	3 cut(s)	125, 310, 400
BccI	CCATC	3 cut(s)	244, 734, 787
BcgI	CGANNNNNNTGC	2 cut(s)	755, 789
BclI	TGATCA	1 cut(s)	534
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	972
BisI	GCNGC	4 cut(s)	114, 324, 414, 1011
BlsI	GCNGC	4 cut(s)	115, 325, 415, 1012
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	2 cut(s)	50, 742
BmiI	GGNNCC	1 cut(s)	744
BmsI	GCATC	3 cut(s)	661, 673, 763
BpmI	CTGGAG	3 cut(s)	173, 348, 1001
Bpu14I	TTCGAA	1 cut(s)	859
BsaJI	CCNNGG	3 cut(s)	364, 484, 805
BsaWI	WCCGGW	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	903, 933
Bsc4I	CCNNNNNNNGG	1 cut(s)	739
Bse1I	ACTGG	3 cut(s)	156, 188, 984
Bse21I	CCTNAGG	1 cut(s)	394
Bse3DI	GCAATG	1 cut(s)	997
BseAI	TCCGGA	1 cut(s)	215
BseDI	CCNNGG	3 cut(s)	364, 484, 805
BseGI	GGATG	4 cut(s)	664, 729, 778, 1052
BseLI	CCNNNNNNNGG	1 cut(s)	739
BseMI	GCAATG	1 cut(s)	997
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	3 cut(s)	156, 188, 984
BseXI	GCAGC	3 cut(s)	125, 310, 400
BsgI	GTGCAG	2 cut(s)	76, 399
Bsh1236I	CGCG	1 cut(s)	713
BshFI	GGCC	4 cut(s)	187, 629, 743, 1013
BsiHKAI	GWGCWC	3 cut(s)	159, 442, 904
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	1 cut(s)	739
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	388
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	4 cut(s)	187, 629, 743, 1013
Bsp119I	TTCGAA	1 cut(s)	859
Bsp1286I	GDGCHC	3 cut(s)	159, 442, 904
Bsp13I	TCCGGA	1 cut(s)	215
Bsp1407I	TGTACA	1 cut(s)	6
Bsp143I	GATC	4 cut(s)	87, 267, 534, 545
BspACI	CCGC	3 cut(s)	260, 713, 1010
BspANI	GGCC	4 cut(s)	187, 629, 743, 1013
BspCNI	CTCAG	1 cut(s)	467
BspEI	TCCGGA	1 cut(s)	215
BspFNI	CGCG	1 cut(s)	713
BspLI	GGNNCC	1 cut(s)	744
BspMAI	CTGCAG	1 cut(s)	976
BspQI	GCTCTTC	2 cut(s)	447, 780
BspT104I	TTCGAA	1 cut(s)	859
BsrDI	GCAATG	1 cut(s)	997
BsrGI	TGTACA	1 cut(s)	6
BsrI	ACTGG	3 cut(s)	156, 188, 984
BssECI	CCNNGG	3 cut(s)	364, 484, 805
BssMI	GATC	4 cut(s)	87, 267, 534, 545
BssSI	CACGAG	1 cut(s)	903
BssT1I	CCWWGG	3 cut(s)	364, 484, 805
Bst2BI	CACGAG	1 cut(s)	903
Bst4CI	ACNGT	1 cut(s)	955
Bst6I	CTCTTC	2 cut(s)	447, 780
BstAUI	TGTACA	1 cut(s)	6
BstBI	TTCGAA	1 cut(s)	859
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	4 cut(s)	146, 394, 454, 631
BstF5I	GGATG	4 cut(s)	664, 729, 778, 1052
BstFNI	CGCG	1 cut(s)	713
BstHHI	GCGC	3 cut(s)	107, 118, 713
BstKTI	GATC	4 cut(s)	90, 270, 537, 548
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	4 cut(s)	87, 267, 534, 545
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 446, 635, 719, 940
BstNSI	RCATGY	2 cut(s)	13, 580
BstSFI	CTRYAG	1 cut(s)	972
BstUI	CGCG	1 cut(s)	713
BstV1I	GCAGC	3 cut(s)	125, 310, 400
BstXI	CCANNNNNNTGG	1 cut(s)	371
Bsu36I	CCTNAGG	1 cut(s)	394
BsuRI	GGCC	4 cut(s)	187, 629, 743, 1013
BtsCI	GGATG	4 cut(s)	664, 729, 778, 1052
Cac8I	GCNNGC	1 cut(s)	83
CfoI	GCGC	3 cut(s)	107, 118, 713
Cfr13I	GGNCC	2 cut(s)	50, 742
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	6 cut(s)	10, 31, 371, 577, 823, 836
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	4 cut(s)	146, 394, 454, 631
DpnI	GATC	4 cut(s)	89, 269, 536, 547
DpnII	GATC	4 cut(s)	87, 267, 534, 545
DraIII	CACNNNGTG	1 cut(s)	422
EaeI	YGGCCR	2 cut(s)	185, 1011
Eam1104I	CTCTTC	2 cut(s)	447, 780
EarI	CTCTTC	2 cut(s)	447, 780
Ecl136II	GAGCTC	2 cut(s)	157, 902
Eco130I	CCWWGG	3 cut(s)	364, 484, 805
Eco147I	AGGCCT	1 cut(s)	629
Eco24I	GRGCYC	2 cut(s)	159, 904
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	2 cut(s)	157, 902
Eco81I	CCTNAGG	1 cut(s)	394
EcoICRI	GAGCTC	2 cut(s)	157, 902
EcoO109I	RGGNCCY	2 cut(s)	50, 742
EcoT14I	CCWWGG	3 cut(s)	364, 484, 805
EcoT22I	ATGCAT	1 cut(s)	824
EcoT38I	GRGCYC	2 cut(s)	159, 904
ErhI	CCWWGG	3 cut(s)	364, 484, 805
FaeI	CATG	6 cut(s)	13, 34, 374, 580, 826, 839
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	6 cut(s)	9, 30, 370, 576, 822, 835
FbaI	TGATCA	1 cut(s)	534
Fnu4HI	GCNGC	4 cut(s)	114, 324, 414, 1011
FokI	GGATG	4 cut(s)	651, 716, 785, 1039
FriOI	GRGCYC	2 cut(s)	159, 904
Fsp4HI	GCNGC	4 cut(s)	114, 324, 414, 1011
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	3 cut(s)	106, 117, 712
GluI	GCNGC	4 cut(s)	114, 324, 414, 1011
GsuI	CTGGAG	3 cut(s)	173, 348, 1001
HaeIII	GGCC	4 cut(s)	187, 629, 743, 1013
HapII	CCGG	1 cut(s)	216
HhaI	GCGC	3 cut(s)	107, 118, 713
Hin1II	CATG	6 cut(s)	13, 34, 374, 580, 826, 839
Hin6I	GCGC	3 cut(s)	105, 116, 711
HinP1I	GCGC	3 cut(s)	105, 116, 711
HincII	GTYRAC	1 cut(s)	894
HindII	GTYRAC	1 cut(s)	894
HinfI	GANTC	8 cut(s)	330, 376, 466, 493, 521, 701, 983, 993
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	4 cut(s)	7, 143, 894, 1022
Hpy188I	TCNGA	2 cut(s)	317, 457
Hpy188III	TCNNGA	7 cut(s)	53, 216, 302, 470, 497, 668, 1056
Hpy8I	GTNNAC	4 cut(s)	7, 143, 894, 1022
HpyAV	CCTTC	1 cut(s)	763
HpyCH4III	ACNGT	1 cut(s)	955
HpyCH4V	TGCA	6 cut(s)	93, 416, 428, 695, 822, 974
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 446, 635, 719, 940
HpyF3I	CTNAG	4 cut(s)	146, 394, 454, 631
Hsp92II	CATG	6 cut(s)	13, 34, 374, 580, 826, 839
HspAI	GCGC	3 cut(s)	105, 116, 711
Kpn2I	TCCGGA	1 cut(s)	215
Ksp22I	TGATCA	1 cut(s)	534
Kzo9I	GATC	4 cut(s)	87, 267, 534, 545
LguI	GCTCTTC	2 cut(s)	447, 780
LmnI	GCTCC	3 cut(s)	154, 819, 899
Lsp1109I	GCAGC	3 cut(s)	125, 310, 400
LweI	GCATC	3 cut(s)	661, 673, 763
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	3 cut(s)	643, 760, 967
MalI	GATC	4 cut(s)	89, 269, 536, 547
MboI	GATC	4 cut(s)	87, 267, 534, 545
MboII	GAAGA	4 cut(s)	299, 434, 797, 848
MhlI	GDGCHC	3 cut(s)	159, 442, 904
MlsI	TGGCCA	1 cut(s)	187
MluCI	AATT	5 cut(s)	39, 318, 500, 716, 734
MluNI	TGGCCA	1 cut(s)	187
MlyI	GAGTC	4 cut(s)	339, 370, 475, 992
MnlI	CCTC	8 cut(s)	41, 259, 298, 575, 645, 733, 819, 905
Mox20I	TGGCCA	1 cut(s)	187
Mph1103I	ATGCAT	1 cut(s)	824
MroI	TCCGGA	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	187
MseI	TTAA	4 cut(s)	201, 659, 690, 1004
MslI	CAYNNNNRTG	1 cut(s)	669
Msp20I	TGGCCA	1 cut(s)	187
MspA1I	CMGCKG	2 cut(s)	260, 1010
MspI	CCGG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	428
MvnI	CGCG	1 cut(s)	713
MwoI	GCNNNNNNNGC	5 cut(s)	113, 446, 635, 719, 940
NdeII	GATC	4 cut(s)	87, 267, 534, 545
NlaIII	CATG	6 cut(s)	13, 34, 374, 580, 826, 839
NlaIV	GGNNCC	1 cut(s)	744
NsiI	ATGCAT	1 cut(s)	824
NspI	RCATGY	2 cut(s)	13, 580
NspV	TTCGAA	1 cut(s)	859
PceI	AGGCCT	1 cut(s)	629
PciI	ACATGT	1 cut(s)	9
PciSI	GCTCTTC	2 cut(s)	447, 780
PctI	GAATGC	1 cut(s)	428
PfeI	GAWTC	4 cut(s)	493, 521, 701, 993
PkrI	GCNGC	4 cut(s)	115, 325, 415, 1012
PleI	GAGTC	4 cut(s)	338, 370, 474, 991
PpsI	GAGTC	4 cut(s)	338, 370, 474, 991
PpuMI	RGGWCCY	1 cut(s)	50
PscI	ACATGT	1 cut(s)	9
Psp124BI	GAGCTC	2 cut(s)	159, 904
Psp5II	RGGWCCY	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	744
PspPI	GGNCC	2 cut(s)	50, 742
PspPPI	RGGWCCY	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	976
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
RseI	CAYNNNNRTG	1 cut(s)	669
SacI	GAGCTC	2 cut(s)	159, 904
SapI	GCTCTTC	2 cut(s)	447, 780
SaqAI	TTAA	4 cut(s)	201, 659, 690, 1004
SatI	GCNGC	4 cut(s)	114, 324, 414, 1011
Sau3AI	GATC	4 cut(s)	87, 267, 534, 545
Sau96I	GGNCC	2 cut(s)	50, 742
SchI	GAGTC	4 cut(s)	339, 370, 475, 992
SduI	GDGCHC	3 cut(s)	159, 442, 904
SfaNI	GCATC	3 cut(s)	661, 673, 763
SfcI	CTRYAG	1 cut(s)	972
SfuI	TTCGAA	1 cut(s)	859
SinI	GGWCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	669
Sse9I	AATT	5 cut(s)	39, 318, 500, 716, 734
SseBI	AGGCCT	1 cut(s)	629
SsiI	CCGC	3 cut(s)	260, 713, 1010
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	1 cut(s)	102
SstI	GAGCTC	2 cut(s)	159, 904
StuI	AGGCCT	1 cut(s)	629
StyI	CCWWGG	3 cut(s)	364, 484, 805
TaaI	ACNGT	1 cut(s)	955
TaqI	TCGA	2 cut(s)	572, 859
TasI	AATT	5 cut(s)	39, 318, 500, 716, 734
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	1 cut(s)	1013
TfiI	GAWTC	4 cut(s)	493, 521, 701, 993
Tru1I	TTAA	4 cut(s)	201, 659, 690, 1004
Tru9I	TTAA	4 cut(s)	201, 659, 690, 1004
TseI	GCWGC	3 cut(s)	113, 323, 413
TspDTI	ATGAA	4 cut(s)	345, 765, 815, 1041
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	39
XceI	RCATGY	2 cut(s)	13, 580
XspI	CTAG	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.