Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004691

Physical Location & Seq

Genomic Coordinates Reverse (-)

29238360 .. 29242391

Gene Structure 4032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1206900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAAGTGAAGGCACGAGCTCCTGGAAAAATTATACTCTCGGGGGAACATGCTGTTGTTCATGGATCGACGGCGGTGGCTTCCTCCATTGACCTTTACACCTACGTCTCTCTTCGCTTTCCCACTCCCTCTGATAGTGATGATGCACTAAGACTCCAGCTCAAGGAAGTTGGATTAGAGTTTTCATGGCCTATTGGTAGATTAAAAGCAGTCCTATCAGAATTAGATATTCCCAACTCATCAGTGCCAACCTCATGTTCACTGGAGTCGACTAAATCACTTGCTGCTTTAGTTGATGAACTGAAGATTCCAGAGGCAAAAATTGGACTTGGTGCTGGAGTGTTGGCTTTTCTTTGGCTGTATTCATCTATCCAAGGATTTAAGCCTGCTACTGTTGTTATCACTTCAGAACTTCCATTGGGTTCAGGCCTGGGATCATCCGCTGCATTCTGTGTTGCACTCTCGGGTGCTCTTCTTTCTTTCTCAGATTCTGTAAGTCTGGATTTGAGCCACAAAGAGTGGACCAGTTTTGGGGAAAGTGAACTTGATTTGCTGAACAAATGGGCTTTTGAAGGTGAAAAGATCATCCATGGAAAGCCATCTGGAATCGACAATACAGTTAGCACATACGGCAATATGATCAAGTTCAGATCAGGTAGTTTGACTCGCATCAAATCGAACACGACACTCAAAATGCTTATTACCAACACAAAAGTTGGGAGGAACACGAAGGCATTAGTCGCTGGTGTTTCGGAGAGAACTTTAAGGCATCCAAAGGGCATGGCTTCTGTGTTTAACGCAGTGGATTCTATCAGCACGGAAATGGCCAACATCATCCAATCGTCTGCGCCCAATGATCTCTCCATCACTGAGAAGGAAGCGAAAATAGAAGAGTTAATGGAAATGAATCAAGGTTTGCTCCAATGTATGGGGGTCAGCCACGCTTCAATTGAAACCGTTATCCGAACAACGTTGAAATACAAGTTAGCTTCCAAGCTGACGGGAGCTGGGGGCGGAGGTTGTGTTCTCACGCTGCTGCCAACCTTGCTATCAGGAACTGTTGCTCATGAAGTAACTGCTGAACTGGAGTCTTGTGGATTCCGTTGTCTGACGGCCGCCATCGGTGGAAACGGAGTCGAAATTTGCTTCGGCGGTTCATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

388

Amino Acids

40.82

Weight (kDa)

6.03

Isoelectric Point (pI)

30.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	126 - 211	7.9e-11	GHMP kinases N terminal domain
GHMP_kinases_C	PF08544	295 - 347	6.5e-07	GHMP kinases C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27450 AT5G27450 AT5G27450
fragaria_vesca	FvH4_6g05650 FvH4_6g05650
malus_domestica	MD04G1206900.v1.1 MD12G1220700.v1.1
prunus_persica	Prupe.6G327600_v2.0.a1
pyrus_communis	pycom04g18290 pycom12g20650
rosa_chinensis	RchiOBHm_Chr3g0454501 RchiOBHm_Chr7g0220931
rosa_laevigata	RLG00000002188 RLG00000002192 RLG00000025439
rosa_multiflora	Rmu_sc0002105.1_g000027 Rmu_sc0007209.1_g000003 Rmu_sc0026738.1_g000003
rosa_roxburghii	Rroxscaffold_6G00425020 Rroxscaffold_6G00425040
rosa_rugosa	Rorug03G0000100 Rorug07G0198300
rosa_samantha	Rh3AG059300 Rh3BG061400 Rh3CG060200 Rh3DG061100 Rh7DG337500
rosa_wichuraiana	Rw0G017160 Rw0G017190 Rw3G004600 Rw7G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	928
AccI	GTMKAC	1 cut(s)	269
AciI	CCGC	5 cut(s)	74, 441, 1014, 1116, 1152
AclI	AACGTT	1 cut(s)	971
AclWI	GGATC	2 cut(s)	73, 442
AcoI	YGGCCR	2 cut(s)	825, 1113
AcsI	RAATTY	1 cut(s)	1140
AcuI	CTGAAG	2 cut(s)	323, 390
AfiI	CCNNNNNNNGG	3 cut(s)	163, 531, 928
AgsI	TTSAA	4 cut(s)	572, 948, 953, 976
AjnI	CCWGG	2 cut(s)	22, 429
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AloI	GAACNNNNNNTCC	2 cut(s)	1008, 1040
AluBI	AGCT	5 cut(s)	20, 160, 989, 997, 1007
AluI	AGCT	5 cut(s)	20, 160, 989, 997, 1007
Alw21I	GWGCWC	2 cut(s)	22, 472
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	2 cut(s)	73, 442
AlwNI	CAGNNNCTG	2 cut(s)	491, 1058
Ama87I	CYCGRG	2 cut(s)	40, 463
AoxI	GGCC	4 cut(s)	188, 427, 825, 1113
ApeKI	GCWGC	4 cut(s)	284, 443, 1033, 1036
ApoI	RAATTY	1 cut(s)	1140
AspLEI	GCGC	1 cut(s)	850
AspS9I	GGNCC	1 cut(s)	522
AsuHPI	GGTGA	1 cut(s)	587
AvaI	CYCGRG	2 cut(s)	40, 463
AvaII	GGWCC	1 cut(s)	522
BalI	TGGCCA	1 cut(s)	827
BanII	GRGCYC	1 cut(s)	22
BauI	CACGAG	1 cut(s)	15
Bbv12I	GWGCWC	2 cut(s)	22, 472
BbvI	GCAGC	4 cut(s)	271, 430, 1020, 1023
BccI	CCATC	3 cut(s)	607, 872, 1127
BceAI	ACGGC	3 cut(s)	87, 646, 1128
BciT130I	CCWGG	2 cut(s)	24, 431
BclI	TGATCA	1 cut(s)	639
BcoDI	GTCTC	1 cut(s)	112
BisI	GCNGC	5 cut(s)	285, 444, 1034, 1037, 1116
BlsI	GCNGC	5 cut(s)	286, 445, 1035, 1038, 1117
Bme1390I	CCNGG	2 cut(s)	24, 431
Bme18I	GGWCC	1 cut(s)	522
BmeT110I	CYCGRG	2 cut(s)	40, 463
BmgT120I	GGNCC	1 cut(s)	522
BmrFI	CCNGG	2 cut(s)	24, 431
BmsI	GCATC	3 cut(s)	133, 678, 778
BpmI	CTGGAG	4 cut(s)	140, 284, 357, 1106
BpuEI	CTTGAG	1 cut(s)	146
BsaJI	CCNNGG	3 cut(s)	373, 430, 589
BsaXI	ACNNNNNCTCC	4 cut(s)	138, 168, 1008, 1038
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 531, 928
Bse1I	ACTGG	3 cut(s)	267, 525, 1089
BseBI	CCWGG	2 cut(s)	24, 431
BseDI	CCNNGG	3 cut(s)	373, 430, 589
BseGI	GGATG	4 cut(s)	437, 585, 769, 834
BseLI	CCNNNNNNNGG	3 cut(s)	163, 531, 928
BseMII	CTCAG	2 cut(s)	498, 861
BseNI	ACTGG	3 cut(s)	267, 525, 1089
BseX3I	CGGCCG	1 cut(s)	1113
BseXI	GCAGC	4 cut(s)	271, 430, 1020, 1023
BseYI	CCCAGC	1 cut(s)	1007
Bsh1285I	CGRYCG	1 cut(s)	1116
BshFI	GGCC	4 cut(s)	190, 429, 827, 1115
BsiEI	CGRYCG	1 cut(s)	1116
BsiHKAI	GWGCWC	2 cut(s)	22, 472
BsiHKCI	CYCGRG	2 cut(s)	40, 463
BslI	CCNNNNNNNGG	3 cut(s)	163, 531, 928
BsmAI	GTCTC	1 cut(s)	112
BsmBI	CGTCTC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	4 cut(s)	190, 429, 827, 1115
BsoBI	CYCGRG	2 cut(s)	40, 463
Bsp1286I	GDGCHC	2 cut(s)	22, 472
Bsp143I	GATC	6 cut(s)	65, 434, 582, 639, 650, 856
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	5 cut(s)	74, 441, 1014, 1116, 1152
BspANI	GGCC	4 cut(s)	190, 429, 827, 1115
BspCNI	CTCAG	2 cut(s)	497, 862
BspHI	TCATGA	1 cut(s)	1066
BspPI	GGATC	2 cut(s)	73, 442
BspQI	GCTCTTC	1 cut(s)	477
BsrI	ACTGG	3 cut(s)	267, 525, 1089
BssECI	CCNNGG	3 cut(s)	373, 430, 589
BssMI	GATC	6 cut(s)	65, 434, 582, 639, 650, 856
BssSI	CACGAG	1 cut(s)	15
BssT1I	CCWWGG	2 cut(s)	373, 589
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	2 cut(s)	24, 431
Bst4CI	ACNGT	4 cut(s)	394, 619, 958, 1060
Bst6I	CTCTTC	3 cut(s)	117, 477, 885
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	3 cut(s)	149, 484, 870
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	4 cut(s)	437, 585, 769, 834
BstHHI	GCGC	1 cut(s)	850
BstKTI	GATC	6 cut(s)	68, 437, 585, 642, 653, 859
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	6 cut(s)	65, 434, 582, 639, 650, 856
BstMCI	CGRYCG	1 cut(s)	1116
BstMWI	GCNNNNNNNGC	3 cut(s)	630, 740, 1045
BstNI	CCWGG	2 cut(s)	24, 431
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	22, 429
BstV1I	GCAGC	4 cut(s)	271, 430, 1020, 1023
BstZI	CGGCCG	1 cut(s)	1113
BsuRI	GGCC	4 cut(s)	190, 429, 827, 1115
BtgI	CCRYGG	1 cut(s)	589
BtsCI	GGATG	4 cut(s)	437, 585, 769, 834
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	4 cut(s)	249, 260, 807, 867
Cac8I	GCNNGC	1 cut(s)	387
CaiI	CAGNNNCTG	2 cut(s)	491, 1058
CciI	TCATGA	1 cut(s)	1066
CfoI	GCGC	1 cut(s)	850
Cfr13I	GGNCC	1 cut(s)	522
CviAII	CATG	7 cut(s)	50, 62, 186, 255, 590, 781, 1067
DdeI	CTNAG	3 cut(s)	149, 484, 870
DpnI	GATC	6 cut(s)	67, 436, 584, 641, 652, 858
DpnII	GATC	6 cut(s)	65, 434, 582, 639, 650, 856
EaeI	YGGCCR	2 cut(s)	825, 1113
EagI	CGGCCG	1 cut(s)	1113
Eam1104I	CTCTTC	3 cut(s)	117, 477, 885
EarI	CTCTTC	3 cut(s)	117, 477, 885
EciI	GGCGGA	1 cut(s)	1029
Ecl136II	GAGCTC	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	1113
Eco130I	CCWWGG	2 cut(s)	373, 589
Eco147I	AGGCCT	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	522
Eco52I	CGGCCG	1 cut(s)	1113
Eco53kI	GAGCTC	1 cut(s)	20
Eco57I	CTGAAG	2 cut(s)	323, 390
Eco88I	CYCGRG	2 cut(s)	40, 463
EcoICRI	GAGCTC	1 cut(s)	20
EcoRII	CCWGG	2 cut(s)	22, 429
EcoT14I	CCWWGG	2 cut(s)	373, 589
EcoT38I	GRGCYC	1 cut(s)	22
ErhI	CCWWGG	2 cut(s)	373, 589
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	7 cut(s)	53, 65, 189, 258, 593, 784, 1070
FatI	CATG	7 cut(s)	49, 61, 185, 254, 589, 780, 1066
FbaI	TGATCA	1 cut(s)	639
FblI	GTMKAC	1 cut(s)	269
Fnu4HI	GCNGC	5 cut(s)	285, 444, 1034, 1037, 1116
FokI	GGATG	4 cut(s)	424, 572, 756, 821
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	5 cut(s)	285, 444, 1034, 1037, 1116
GlaI	GCGC	1 cut(s)	849
GluI	GCNGC	5 cut(s)	285, 444, 1034, 1037, 1116
GsaI	CCCAGC	1 cut(s)	1011
GsuI	CTGGAG	4 cut(s)	140, 284, 357, 1106
HaeIII	GGCC	4 cut(s)	190, 429, 827, 1115
HhaI	GCGC	1 cut(s)	850
Hin1II	CATG	7 cut(s)	53, 65, 189, 258, 593, 784, 1070
Hin6I	GCGC	1 cut(s)	848
HinP1I	GCGC	1 cut(s)	848
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	4 cut(s)	260, 270, 522, 542
Hpy188I	TCNGA	8 cut(s)	133, 220, 409, 487, 650, 754, 965, 1110
Hpy188III	TCNNGA	5 cut(s)	311, 500, 603, 1053, 1067
Hpy8I	GTNNAC	4 cut(s)	260, 270, 522, 542
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	4 cut(s)	4, 566, 724, 868
HpyCH4III	ACNGT	4 cut(s)	394, 619, 958, 1060
HpyCH4IV	ACGT	2 cut(s)	105, 971
HpyCH4V	TGCA	3 cut(s)	146, 446, 458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	630, 740, 1045
HpyF3I	CTNAG	3 cut(s)	149, 484, 870
HpySE526I	ACGT	2 cut(s)	105, 971
Hsp92II	CATG	7 cut(s)	53, 65, 189, 258, 593, 784, 1070
HspAI	GCGC	1 cut(s)	848
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	6 cut(s)	65, 434, 582, 639, 650, 856
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	3 cut(s)	25, 924, 1004
Lsp1109I	GCAGC	4 cut(s)	271, 430, 1020, 1023
LweI	GCATC	3 cut(s)	133, 678, 778
MaeII	ACGT	2 cut(s)	105, 971
MaeIII	GTNAC	1 cut(s)	1072
MalI	GATC	6 cut(s)	67, 436, 584, 641, 652, 858
MboI	GATC	6 cut(s)	65, 434, 582, 639, 650, 856
MboII	GAAGA	4 cut(s)	104, 316, 464, 902
MfeI	CAATTG	1 cut(s)	948
MhlI	GDGCHC	2 cut(s)	22, 472
MlsI	TGGCCA	1 cut(s)	827
MluCI	AATT	5 cut(s)	30, 221, 321, 948, 1140
MluNI	TGGCCA	1 cut(s)	827
MlyI	GAGTC	5 cut(s)	147, 275, 658, 1097, 1143
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	6 cut(s)	94, 139, 262, 307, 714, 1010
Mox20I	TGGCCA	1 cut(s)	827
MscI	TGGCCA	1 cut(s)	827
MseI	TTAA	5 cut(s)	203, 381, 764, 795, 896
MslI	CAYNNNNRTG	1 cut(s)	821
Msp20I	TGGCCA	1 cut(s)	827
MspA1I	CMGCKG	1 cut(s)	443
MspR9I	CCNGG	2 cut(s)	24, 431
MunI	CAATTG	1 cut(s)	948
Mva1269I	GAATGC	1 cut(s)	446
MvaI	CCWGG	2 cut(s)	24, 431
MwoI	GCNNNNNNNGC	3 cut(s)	630, 740, 1045
NcoI	CCATGG	1 cut(s)	589
NdeII	GATC	6 cut(s)	65, 434, 582, 639, 650, 856
NlaIII	CATG	7 cut(s)	53, 65, 189, 258, 593, 784, 1070
NspI	RCATGY	1 cut(s)	53
PagI	TCATGA	1 cut(s)	1066
PceI	AGGCCT	1 cut(s)	429
PciSI	GCTCTTC	1 cut(s)	477
PctI	GAATGC	1 cut(s)	446
PfeI	GAWTC	6 cut(s)	307, 488, 606, 806, 907, 1098
PflMI	CCANNNNNTGG	1 cut(s)	928
PfoI	TCCNGGA	1 cut(s)	22
PkrI	GCNGC	5 cut(s)	286, 445, 1035, 1038, 1117
PleI	GAGTC	5 cut(s)	147, 274, 658, 1096, 1142
PpsI	GAGTC	5 cut(s)	147, 274, 658, 1096, 1142
Psp124BI	GAGCTC	1 cut(s)	22
Psp1406I	AACGTT	1 cut(s)	971
Psp6I	CCWGG	2 cut(s)	22, 429
PspFI	CCCAGC	1 cut(s)	1007
PspGI	CCWGG	2 cut(s)	22, 429
PspPI	GGNCC	1 cut(s)	522
PstNI	CAGNNNCTG	2 cut(s)	491, 1058
RseI	CAYNNNNRTG	1 cut(s)	821
SacI	GAGCTC	1 cut(s)	22
SalI	GTCGAC	1 cut(s)	268
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	5 cut(s)	203, 381, 764, 795, 896
SatI	GCNGC	5 cut(s)	285, 444, 1034, 1037, 1116
Sau3AI	GATC	6 cut(s)	65, 434, 582, 639, 650, 856
Sau96I	GGNCC	1 cut(s)	522
SchI	GAGTC	5 cut(s)	147, 275, 658, 1097, 1143
ScrFI	CCNGG	2 cut(s)	24, 431
SduI	GDGCHC	2 cut(s)	22, 472
SfaNI	GCATC	3 cut(s)	133, 678, 778
SinI	GGWCC	1 cut(s)	522
SmiMI	CAYNNNNRTG	1 cut(s)	821
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	5 cut(s)	30, 221, 321, 948, 1140
SseBI	AGGCCT	1 cut(s)	429
SsiI	CCGC	5 cut(s)	74, 441, 1014, 1116, 1152
SstI	GAGCTC	1 cut(s)	22
StuI	AGGCCT	1 cut(s)	429
StyD4I	CCNGG	2 cut(s)	22, 429
StyI	CCWWGG	2 cut(s)	373, 589
TaaI	ACNGT	4 cut(s)	394, 619, 958, 1060
TaiI	ACGT	2 cut(s)	108, 974
TaqI	TCGA	5 cut(s)	68, 269, 609, 677, 1137
TasI	AATT	5 cut(s)	30, 221, 321, 948, 1140
TauI	GCSGC	1 cut(s)	1118
TfiI	GAWTC	6 cut(s)	307, 488, 606, 806, 907, 1098
Tru1I	TTAA	5 cut(s)	203, 381, 764, 795, 896
Tru9I	TTAA	5 cut(s)	203, 381, 764, 795, 896
TscAI	CASTG	4 cut(s)	249, 267, 807, 874
TseI	GCWGC	4 cut(s)	284, 443, 1033, 1036
TspDTI	ATGAA	7 cut(s)	50, 174, 312, 354, 920, 1083, 1146
TspGWI	ACGGA	3 cut(s)	833, 1091, 1146
TspRI	CASTG	4 cut(s)	249, 267, 807, 874
Van91I	CCANNNNNTGG	1 cut(s)	928
VpaK11BI	GGWCC	1 cut(s)	522
XapI	RAATTY	1 cut(s)	1140
XceI	RCATGY	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.