Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002105.1

Orthogroup ID

OG0004691

Physical Location & Seq

Genomic Coordinates Reverse (-)

138876 .. 142053

Gene Structure 3178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002105.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atggaagtaaaagccagagcacctggaaagatcatactgtttggtaaacatgctgtggttcatggatctactaccgtctctgcctccattgacctgtgtacctatgccactctttgctttcccgctcattctgataatattggtttacttagactggagctcaaggatattggattagagtttctgtggccagttggtaggattaaggaagcactatccggaatagatgttcccaacccatcaacacctacctcatgtccagcagaggtgaacaaatcatttgctattttagttgaagaactaaacattccagaggcaaagatcggaatagctgctggagtcttggcttttctttggctatgttcatctatccaaggttcggaatttcctttgggttcaagtcttggtttatctgccgcactttgtgttgcattctctggtgctcttcttgcttactcagattatgcgagtccggatttcagctaccaggggtggttagattttggcgaaagcgaacttgacttgctgaataaatgggcatttgaaggtgaaaaaatcatccatggaaagccatctggagttgacaacatagcacatatgattccagatgctatggcttctgtgtttaatgtagttgattctatcagcgcggaattggctaccattatccaatcagaggcccctgatgaaatctctgtaactaagaaggtggcgaaaatagaagagttgatggaaatgaaccaaggcttgctccaatgcaaagggggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

256

Amino Acids

27.26

Weight (kDa)

4.69

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27450 AT5G27450 AT5G27450
fragaria_vesca	FvH4_6g05650 FvH4_6g05650
malus_domestica	MD04G1206900.v1.1 MD12G1220700.v1.1
prunus_persica	Prupe.6G327600_v2.0.a1
pyrus_communis	pycom04g18290 pycom12g20650
rosa_chinensis	RchiOBHm_Chr3g0454501 RchiOBHm_Chr7g0220931
rosa_laevigata	RLG00000002188 RLG00000002192 RLG00000025439
rosa_multiflora	Rmu_sc0002105.1_g000027 Rmu_sc0007209.1_g000003 Rmu_sc0026738.1_g000003
rosa_roxburghii	Rroxscaffold_6G00425020 Rroxscaffold_6G00425040
rosa_rugosa	Rorug03G0000100 Rorug07G0198300
rosa_samantha	Rh3AG059300 Rh3BG061400 Rh3CG060200 Rh3DG061100 Rh7DG337500
rosa_wichuraiana	Rw0G017160 Rw0G017190 Rw3G004600 Rw7G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	125
AccII	CGCG	1 cut(s)	650
AccIII	TCCGGA	2 cut(s)	218, 472
AciI	CCGC	3 cut(s)	123, 417, 650
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	383
AdeI	CACNNNGTG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	2 cut(s)	379, 676
AgsI	TTSAA	3 cut(s)	296, 399, 545
AjnI	CCWGG	2 cut(s)	22, 486
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	3 cut(s)	160, 332, 483
AluI	AGCT	3 cut(s)	160, 332, 483
Alw21I	GWGCWC	3 cut(s)	22, 162, 445
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	73
Aor13HI	TCCGGA	2 cut(s)	218, 472
AoxI	GGCC	2 cut(s)	188, 678
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	650
AspS9I	GGNCC	1 cut(s)	679
AsuHPI	GGTGA	2 cut(s)	280, 560
BaeI	ACNNNNGTAYC	2 cut(s)	82, 115
BalI	TGGCCA	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	3 cut(s)	22, 162, 445
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	3 cut(s)	247, 580, 724
BciT130I	CCWGG	2 cut(s)	24, 488
BcoDI	GTCTC	1 cut(s)	82
BisI	GCNGC	2 cut(s)	333, 417
BlsI	GCNGC	2 cut(s)	334, 418
Bme1390I	CCNGG	2 cut(s)	24, 488
BmgT120I	GGNCC	1 cut(s)	679
BmiI	GGNNCC	1 cut(s)	681
BmrFI	CCNGG	2 cut(s)	24, 488
BmsI	GCATC	1 cut(s)	598
BpmI	CTGGAG	3 cut(s)	176, 357, 597
BpuEI	CTTGAG	1 cut(s)	146
BsaJI	CCNNGG	4 cut(s)	373, 487, 562, 742
BsaWI	WCCGGW	2 cut(s)	218, 472
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 676
Bse1I	ACTGG	2 cut(s)	159, 191
BseAI	TCCGGA	2 cut(s)	218, 472
BseBI	CCWGG	2 cut(s)	24, 488
BseDI	CCNNGG	4 cut(s)	373, 487, 562, 742
BseGI	GGATG	1 cut(s)	558
BseLI	CCNNNNNNNGG	2 cut(s)	379, 676
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	2 cut(s)	159, 191
BseXI	GCAGC	1 cut(s)	319
Bsh1236I	CGCG	1 cut(s)	650
BshFI	GGCC	2 cut(s)	190, 680
BsiHKAI	GWGCWC	3 cut(s)	22, 162, 445
BsiSI	CCGG	2 cut(s)	219, 473
BslI	CCNNNNNNNGG	2 cut(s)	379, 676
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsmI	GAATGC	1 cut(s)	431
BsnI	GGCC	2 cut(s)	190, 680
Bsp1286I	GDGCHC	3 cut(s)	22, 162, 445
Bsp13I	TCCGGA	2 cut(s)	218, 472
Bsp143I	GATC	3 cut(s)	30, 65, 321
Bsp19I	CCATGG	1 cut(s)	562
BspACI	CCGC	3 cut(s)	123, 417, 650
BspANI	GGCC	2 cut(s)	190, 680
BspCNI	CTCAG	1 cut(s)	470
BspEI	TCCGGA	2 cut(s)	218, 472
BspFNI	CGCG	1 cut(s)	650
BspLI	GGNNCC	1 cut(s)	681
BspPI	GGATC	1 cut(s)	73
BspQI	GCTCTTC	1 cut(s)	450
BsrBI	CCGCTC	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	159, 191
BssECI	CCNNGG	4 cut(s)	373, 487, 562, 742
BssMI	GATC	3 cut(s)	30, 65, 321
BssT1I	CCWWGG	3 cut(s)	373, 562, 742
Bst2UI	CCWGG	2 cut(s)	24, 488
Bst4CI	ACNGT	2 cut(s)	39, 76
Bst6I	CTCTTC	2 cut(s)	450, 717
BstC8I	GCNNGC	1 cut(s)	749
BstDEI	CTNAG	3 cut(s)	149, 457, 702
BstDSI	CCRYGG	1 cut(s)	562
BstF5I	GGATG	1 cut(s)	558
BstFNI	CGCG	1 cut(s)	650
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	3 cut(s)	33, 68, 324
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	3 cut(s)	30, 65, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	449, 656
BstNI	CCWGG	2 cut(s)	24, 488
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	22, 486
BstUI	CGCG	1 cut(s)	650
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	190, 680
BtgI	CCRYGG	1 cut(s)	562
BtsCI	GGATG	1 cut(s)	558
Cac8I	GCNNGC	1 cut(s)	749
CfoI	GCGC	1 cut(s)	650
Cfr13I	GGNCC	1 cut(s)	679
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	4 cut(s)	50, 62, 255, 563
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	3 cut(s)	149, 457, 702
DpnI	GATC	3 cut(s)	32, 67, 323
DpnII	GATC	3 cut(s)	30, 65, 321
DraIII	CACNNNGTG	1 cut(s)	425
EaeI	YGGCCR	1 cut(s)	188
Eam1104I	CTCTTC	2 cut(s)	450, 717
EarI	CTCTTC	2 cut(s)	450, 717
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	3 cut(s)	373, 562, 742
Eco24I	GRGCYC	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	679
EcoRII	CCWGG	2 cut(s)	22, 486
EcoT14I	CCWWGG	3 cut(s)	373, 562, 742
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	3 cut(s)	373, 562, 742
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	4 cut(s)	53, 65, 258, 566
FatI	CATG	4 cut(s)	49, 61, 254, 562
FauI	CCCGC	1 cut(s)	130
FauNDI	CATATG	1 cut(s)	597
Fnu4HI	GCNGC	2 cut(s)	333, 417
FokI	GGATG	1 cut(s)	545
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	2 cut(s)	333, 417
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	2 cut(s)	333, 417
GsuI	CTGGAG	3 cut(s)	176, 357, 597
HaeIII	GGCC	2 cut(s)	190, 680
HapII	CCGG	2 cut(s)	219, 473
HhaI	GCGC	1 cut(s)	650
Hin1II	CATG	4 cut(s)	53, 65, 258, 566
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	4 cut(s)	339, 469, 601, 638
HpaII	CCGG	2 cut(s)	219, 473
HphI	GGTGA	2 cut(s)	280, 560
Hpy166II	GTNNAC	5 cut(s)	47, 99, 146, 271, 583
Hpy188I	TCNGA	5 cut(s)	133, 326, 382, 460, 676
Hpy188III	TCNNGA	5 cut(s)	219, 311, 473, 576, 605
Hpy8I	GTNNAC	5 cut(s)	47, 99, 146, 271, 583
HpyAV	CCTTC	2 cut(s)	539, 700
HpyCH4III	ACNGT	2 cut(s)	39, 76
HpyCH4V	TGCA	2 cut(s)	431, 759
HpyF10VI	GCNNNNNNNGC	2 cut(s)	449, 656
HpyF3I	CTNAG	3 cut(s)	149, 457, 702
Hsp92II	CATG	4 cut(s)	53, 65, 258, 566
HspAI	GCGC	1 cut(s)	648
Kpn2I	TCCGGA	2 cut(s)	218, 472
Kzo9I	GATC	3 cut(s)	30, 65, 321
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	2 cut(s)	157, 756
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	598
MaeIII	GTNAC	1 cut(s)	697
MalI	GATC	3 cut(s)	32, 67, 323
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	3 cut(s)	30, 65, 321
MboII	GAAGA	3 cut(s)	308, 437, 734
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	3 cut(s)	22, 162, 445
MlsI	TGGCCA	1 cut(s)	190
MluCI	AATT	2 cut(s)	383, 653
MluNI	TGGCCA	1 cut(s)	190
MlyI	GAGTC	2 cut(s)	348, 478
MnlI	CCTC	5 cut(s)	94, 259, 262, 307, 670
Mox20I	TGGCCA	1 cut(s)	190
MroI	TCCGGA	2 cut(s)	218, 472
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	2 cut(s)	204, 627
Msp20I	TGGCCA	1 cut(s)	190
MspI	CCGG	2 cut(s)	219, 473
MspR9I	CCNGG	2 cut(s)	24, 488
Mva1269I	GAATGC	1 cut(s)	431
MvaI	CCWGG	2 cut(s)	24, 488
MvnI	CGCG	1 cut(s)	650
MwoI	GCNNNNNNNGC	2 cut(s)	449, 656
NcoI	CCATGG	1 cut(s)	562
NdeI	CATATG	1 cut(s)	597
NdeII	GATC	3 cut(s)	30, 65, 321
NlaIII	CATG	4 cut(s)	53, 65, 258, 566
NlaIV	GGNNCC	1 cut(s)	681
NspI	RCATGY	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	450
PctI	GAATGC	1 cut(s)	431
PfeI	GAWTC	2 cut(s)	601, 638
PkrI	GCNGC	2 cut(s)	334, 418
PleI	GAGTC	2 cut(s)	347, 477
PpsI	GAGTC	2 cut(s)	347, 477
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	22, 486
PspGI	CCWGG	2 cut(s)	22, 486
PspN4I	GGNNCC	1 cut(s)	681
PspPI	GGNCC	1 cut(s)	679
PsuI	RGATCY	1 cut(s)	65
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	204, 627
SatI	GCNGC	2 cut(s)	333, 417
Sau3AI	GATC	3 cut(s)	30, 65, 321
Sau96I	GGNCC	1 cut(s)	679
SchI	GAGTC	2 cut(s)	348, 478
ScrFI	CCNGG	2 cut(s)	24, 488
SduI	GDGCHC	3 cut(s)	22, 162, 445
SfaNI	GCATC	1 cut(s)	598
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	2 cut(s)	383, 653
SsiI	CCGC	3 cut(s)	123, 417, 650
SspI	AATATT	1 cut(s)	139
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	22, 486
StyI	CCWWGG	3 cut(s)	373, 562, 742
TaaI	ACNGT	2 cut(s)	39, 76
TasI	AATT	2 cut(s)	383, 653
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	2 cut(s)	601, 638
Tru1I	TTAA	2 cut(s)	204, 627
Tru9I	TTAA	2 cut(s)	204, 627
TseI	GCWGC	1 cut(s)	332
TspDTI	ATGAA	4 cut(s)	50, 354, 702, 752
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.