Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004691

Physical Location & Seq

Genomic Coordinates Reverse (-)

26935505 .. 26937304

Gene Structure 1800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002188

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGAAGTAAAAGCCAGAGCACCTGGAAAGATCATACTGTTTGGTGAACATGCTGTGTTTCATGGATCTACTGCCGTCACTGCCTCCATTGACCTGTGTGCCTATGCCACTCTTTGCTTTCCCGCTCATTCTGATAATAATGGTTTACTTAGACTGGAGCTCAAAGCTATTGGATTAGAGTTTCTGTGGCCAGTTGATGTTCCCAAACCATCAACACCTCCCTCGTGTCCAGCGGAGGTGAACAAATCACTTGCTATTTTAGTTGAAGAACTAAACATTCCAGAGGCAAAGATCGGAATAGCTGCGGGAGTCTTGGCTCCTGCAACAGTTATTTTCAGTTCGAAACTTCCTTTGGGTTCAGGTCTTGGTTCATCTGCCGCACTTTGTGTTGCATTCTCTGGTGCTCTTCTTGCTTACTCAGATTGTGCGAGTCTGGATTTCAGCCACCAAGGGTGGTTAGATTTTGGCGGAAGCGAACTTGACTTGCTGAATAAATGGGCATTTGAAGGATTCTTGAGTTATATAGTTCTTGGAATGATTCAGGAAGAGGTTCATAATCTGTATGAATATTATGGAACTACTTCATTAGTGCTTGCCAGAGCCCTAGAGACCACTAGATCCTCTTTGCATCTTGAGTTGCCTTATAGGAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

219

Amino Acids

23.37

Weight (kDa)

5.33

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	103 - 140	1.5e-06	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27450 AT5G27450 AT5G27450
fragaria_vesca	FvH4_6g05650 FvH4_6g05650
malus_domestica	MD04G1206900.v1.1 MD12G1220700.v1.1
prunus_persica	Prupe.6G327600_v2.0.a1
pyrus_communis	pycom04g18290 pycom12g20650
rosa_chinensis	RchiOBHm_Chr3g0454501 RchiOBHm_Chr7g0220931
rosa_laevigata	RLG00000002188 RLG00000002192 RLG00000025439
rosa_multiflora	Rmu_sc0002105.1_g000027 Rmu_sc0007209.1_g000003 Rmu_sc0026738.1_g000003
rosa_roxburghii	Rroxscaffold_6G00425020 Rroxscaffold_6G00425040
rosa_rugosa	Rorug03G0000100 Rorug07G0198300
rosa_samantha	Rh3AG059300 Rh3BG061400 Rh3CG060200 Rh3DG061100 Rh7DG337500
rosa_wichuraiana	Rw0G017160 Rw0G017190 Rw3G004600 Rw7G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	125
AciI	CCGC	5 cut(s)	123, 233, 305, 378, 468
AclWI	GGATC	2 cut(s)	73, 612
AcoI	YGGCCR	1 cut(s)	188
AdeI	CACNNNGTG	1 cut(s)	386
AgsI	TTSAA	2 cut(s)	266, 506
AjnI	CCWGG	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	3 cut(s)	160, 167, 302
AluI	AGCT	3 cut(s)	160, 167, 302
Alw21I	GWGCWC	3 cut(s)	22, 162, 406
Alw26I	GTCTC	1 cut(s)	602
AlwI	GGATC	2 cut(s)	73, 612
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	302
Asp700I	GAANNNNTTC	2 cut(s)	549, 580
AsuHPI	GGTGA	2 cut(s)	56, 250
AsuII	TTCGAA	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	190
BanII	GRGCYC	2 cut(s)	162, 604
BauI	CACGAG	1 cut(s)	223
Bbv12I	GWGCWC	3 cut(s)	22, 162, 406
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	1 cut(s)	217
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	602
BfaI	CTAG	2 cut(s)	605, 615
BisI	GCNGC	2 cut(s)	303, 378
BlsI	GCNGC	2 cut(s)	304, 379
Bme1390I	CCNGG	1 cut(s)	24
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	637
BpmI	CTGGAG	1 cut(s)	176
Bpu14I	TTCGAA	1 cut(s)	341
BpuEI	CTTGAG	2 cut(s)	535, 653
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	1 cut(s)	448
Bse1I	ACTGG	2 cut(s)	159, 191
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	448
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	2 cut(s)	159, 191
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	1 cut(s)	190
BsiHKAI	GWGCWC	3 cut(s)	22, 162, 406
BsmAI	GTCTC	1 cut(s)	602
BsmI	GAATGC	1 cut(s)	392
BsnI	GGCC	1 cut(s)	190
Bso31I	GGTCTC	1 cut(s)	602
Bsp119I	TTCGAA	1 cut(s)	341
Bsp1286I	GDGCHC	4 cut(s)	22, 162, 406, 604
Bsp143I	GATC	4 cut(s)	30, 65, 291, 617
BspACI	CCGC	5 cut(s)	123, 233, 305, 378, 468
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	1 cut(s)	431
BspLI	GGNNCC	1 cut(s)	318
BspPI	GGATC	2 cut(s)	73, 612
BspQI	GCTCTTC	1 cut(s)	411
BspT104I	TTCGAA	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	602
BsrBI	CCGCTC	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	159, 191
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	4 cut(s)	30, 65, 291, 617
BssSI	CACGAG	1 cut(s)	223
BssT1I	CCWWGG	1 cut(s)	448
Bst2BI	CACGAG	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	39, 328
Bst6I	CTCTTC	2 cut(s)	411, 540
BstBI	TTCGAA	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	2 cut(s)	149, 418
BstKTI	GATC	4 cut(s)	33, 68, 294, 620
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	4 cut(s)	30, 65, 291, 617
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 410
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	289
BstX2I	RGATCY	2 cut(s)	65, 617
BstYI	RGATCY	2 cut(s)	65, 617
BsuRI	GGCC	1 cut(s)	190
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	594
CviAII	CATG	2 cut(s)	50, 62
CviJI	RGCY	8 cut(s)	14, 160, 167, 190, 302, 317, 444, 602
CviKI_1	RGCY	8 cut(s)	14, 160, 167, 190, 302, 317, 444, 602
DdeI	CTNAG	2 cut(s)	149, 418
DpnI	GATC	4 cut(s)	32, 67, 293, 619
DpnII	GATC	4 cut(s)	30, 65, 291, 617
DraIII	CACNNNGTG	1 cut(s)	386
EaeI	YGGCCR	1 cut(s)	188
Eam1104I	CTCTTC	2 cut(s)	411, 540
EarI	CTCTTC	2 cut(s)	411, 540
EciI	GGCGGA	1 cut(s)	483
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	448
Eco24I	GRGCYC	2 cut(s)	162, 604
Eco31I	GGTCTC	1 cut(s)	602
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	448
EcoT38I	GRGCYC	2 cut(s)	162, 604
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	2 cut(s)	53, 65
FatI	CATG	2 cut(s)	49, 61
FauI	CCCGC	2 cut(s)	130, 298
Fnu4HI	GCNGC	2 cut(s)	303, 378
FriOI	GRGCYC	2 cut(s)	162, 604
Fsp4HI	GCNGC	2 cut(s)	303, 378
FspBI	CTAG	2 cut(s)	605, 615
GluI	GCNGC	2 cut(s)	303, 378
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	190
Hin1II	CATG	2 cut(s)	53, 65
HinfI	GANTC	4 cut(s)	309, 430, 510, 538
HphI	GGTGA	2 cut(s)	56, 250
Hpy166II	GTNNAC	3 cut(s)	47, 146, 241
Hpy188I	TCNGA	3 cut(s)	133, 296, 421
Hpy188III	TCNNGA	5 cut(s)	281, 434, 514, 542, 632
Hpy8I	GTNNAC	3 cut(s)	47, 146, 241
HpyAV	CCTTC	1 cut(s)	500
HpyCH4III	ACNGT	2 cut(s)	39, 328
HpyCH4V	TGCA	3 cut(s)	323, 392, 628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 410
HpyF3I	CTNAG	2 cut(s)	149, 418
Hsp92II	CATG	2 cut(s)	53, 65
Kzo9I	GATC	4 cut(s)	30, 65, 291, 617
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	2 cut(s)	157, 322
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	2 cut(s)	605, 615
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	4 cut(s)	32, 67, 293, 619
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	4 cut(s)	30, 65, 291, 617
MboII	GAAGA	3 cut(s)	278, 398, 557
MflI	RGATCY	2 cut(s)	65, 617
MhlI	GDGCHC	4 cut(s)	22, 162, 406, 604
MlsI	TGGCCA	1 cut(s)	190
MluNI	TGGCCA	1 cut(s)	190
MlyI	GAGTC	2 cut(s)	318, 439
MnlI	CCTC	7 cut(s)	94, 228, 229, 232, 277, 541, 631
Mox20I	TGGCCA	1 cut(s)	190
MroXI	GAANNNNTTC	2 cut(s)	549, 580
MscI	TGGCCA	1 cut(s)	190
Msp20I	TGGCCA	1 cut(s)	190
MspA1I	CMGCKG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	80, 410
NdeII	GATC	4 cut(s)	30, 65, 291, 617
NlaIII	CATG	2 cut(s)	53, 65
NlaIV	GGNNCC	1 cut(s)	318
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	53
NspV	TTCGAA	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	411
PctI	GAATGC	1 cut(s)	392
PdmI	GAANNNNTTC	2 cut(s)	549, 580
PfeI	GAWTC	2 cut(s)	510, 538
PkrI	GCNGC	2 cut(s)	304, 379
PleI	GAGTC	2 cut(s)	317, 438
PpsI	GAGTC	2 cut(s)	317, 438
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	318
PsuI	RGATCY	2 cut(s)	65, 617
SacI	GAGCTC	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	411
SatI	GCNGC	2 cut(s)	303, 378
Sau3AI	GATC	4 cut(s)	30, 65, 291, 617
SchI	GAGTC	2 cut(s)	318, 439
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	4 cut(s)	22, 162, 406, 604
SetI	ASST	9 cut(s)	25, 96, 162, 169, 220, 240, 304, 364, 552
SfaNI	GCATC	1 cut(s)	637
SfuI	TTCGAA	1 cut(s)	341
SmlI	CTYRAG	2 cut(s)	514, 632
SmoI	CTYRAG	2 cut(s)	514, 632
SsiI	CCGC	5 cut(s)	123, 233, 305, 378, 468
SspI	AATATT	1 cut(s)	569
SspMI	CTAG	2 cut(s)	605, 615
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	2 cut(s)	39, 328
TaqI	TCGA	1 cut(s)	341
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	2 cut(s)	510, 538
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	5 cut(s)	50, 360, 542, 573, 579
TspRI	CASTG	1 cut(s)	85
XceI	RCATGY	1 cut(s)	53
XmnI	GAANNNNTTC	2 cut(s)	549, 580
XspI	CTAG	2 cut(s)	605, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.