Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004691

Physical Location & Seq

Genomic Coordinates Forward (+)

44355991 .. 44359065

Gene Structure 3075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG337500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGAAGTAAAAGCCAGAGCACCTGGAAAGATCATACTGTTTGGTAAACATGCTGTGGTTCATGGATCTACTACCGTCTCTGCCTCCATTGACCTGTGTACCTATGCCACTCTTTGCTTTCCCGCTCATTCTGATAATATTGGTTTACTTAGACTGGAGCTCAAGGATATTGGATTAGAGTTTCTGTGGCCAGTTGGTAGGATTAAGGAAGCACTATCCGGAATAGATGTTCCCAACCCATCAACACCTACCTCATGTCCAGCAGAGGTGAACAAATCATTTGCTATTTTAGTTGAAGAACTAAACATTCCAGAGGCAAAGATCGGAATAGCTGCTGGAGTCTTGGCTTTTCTTTGGCTATGTTCATCTATCCAAGGGTATGGGACTCCTGCAACAGTTATTATCAGTTCGGAACTTCCTTTGGGTTCAGGTCTTGGTTTATCTGCCGCACTTTGTGTTGCATTCTCTGGTGCTCTTCTTGCTTACTCAGATTATGCGAGTCCGGATTTCAGCTACCAGGGGTGGTTAGATTTTGGCGAAAGCGAACTTGACTTGCTGAATAAATGGGCATTTGAAGGTGAAAAAATCATCCATGGAAAGCCATCTGGAGTTGACAACATAGCACATATGTTTAGATCAGGCAGTTTGACACGCCTCAAATCAAACAAGCCACTCAAAATACTCATCACTAACACAAAAGTTGGGAGGAACACAAAGGCCTTAGTTGCTGGTGTTTTAGAGAGGAACACAAAGGCCTTAGTTACTGTTCATCCAGATTCCAGATGCTATGACTTCTGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

267

Amino Acids

28.56

Weight (kDa)

6.59

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	126 - 209	8.7e-08	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27450 AT5G27450 AT5G27450
fragaria_vesca	FvH4_6g05650 FvH4_6g05650
malus_domestica	MD04G1206900.v1.1 MD12G1220700.v1.1
prunus_persica	Prupe.6G327600_v2.0.a1
pyrus_communis	pycom04g18290 pycom12g20650
rosa_chinensis	RchiOBHm_Chr3g0454501 RchiOBHm_Chr7g0220931
rosa_laevigata	RLG00000002188 RLG00000002192 RLG00000025439
rosa_multiflora	Rmu_sc0002105.1_g000027 Rmu_sc0007209.1_g000003 Rmu_sc0026738.1_g000003
rosa_roxburghii	Rroxscaffold_6G00425020 Rroxscaffold_6G00425040
rosa_rugosa	Rorug03G0000100 Rorug07G0198300
rosa_samantha	Rh3AG059300 Rh3BG061400 Rh3CG060200 Rh3DG061100 Rh7DG337500
rosa_wichuraiana	Rw0G017160 Rw0G017190 Rw3G004600 Rw7G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	125
AccIII	TCCGGA	2 cut(s)	218, 502
AciI	CCGC	2 cut(s)	123, 447
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	1 cut(s)	188
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	1 cut(s)	100
AgsI	TTSAA	2 cut(s)	296, 575
AjnI	CCWGG	2 cut(s)	22, 516
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	3 cut(s)	160, 332, 513
AluI	AGCT	3 cut(s)	160, 332, 513
Alw21I	GWGCWC	3 cut(s)	22, 162, 475
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	73
Aor13HI	TCCGGA	2 cut(s)	218, 502
AoxI	GGCC	3 cut(s)	188, 717, 753
ApeKI	GCWGC	1 cut(s)	332
AsuHPI	GGTGA	2 cut(s)	280, 590
BaeI	ACNNNNGTAYC	2 cut(s)	82, 115
BalI	TGGCCA	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	3 cut(s)	22, 162, 475
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	2 cut(s)	247, 610
BciT130I	CCWGG	2 cut(s)	24, 518
BcoDI	GTCTC	1 cut(s)	82
BisI	GCNGC	2 cut(s)	333, 447
BlsI	GCNGC	2 cut(s)	334, 448
Bme1390I	CCNGG	2 cut(s)	24, 518
BmrFI	CCNGG	2 cut(s)	24, 518
BmsI	GCATC	1 cut(s)	773
BpmI	CTGGAG	3 cut(s)	176, 357, 627
BpuEI	CTTGAG	1 cut(s)	146
BsaJI	CCNNGG	3 cut(s)	373, 517, 592
BsaWI	WCCGGW	2 cut(s)	218, 502
Bse1I	ACTGG	2 cut(s)	159, 191
BseAI	TCCGGA	2 cut(s)	218, 502
BseBI	CCWGG	2 cut(s)	24, 518
BseDI	CCNNGG	3 cut(s)	373, 517, 592
BseGI	GGATG	2 cut(s)	588, 769
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	2 cut(s)	159, 191
BseXI	GCAGC	1 cut(s)	319
BshFI	GGCC	3 cut(s)	190, 719, 755
BsiHKAI	GWGCWC	3 cut(s)	22, 162, 475
BsiSI	CCGG	2 cut(s)	219, 503
BslFI	GGGAC	1 cut(s)	397
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	397
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	3 cut(s)	190, 719, 755
Bsp1286I	GDGCHC	3 cut(s)	22, 162, 475
Bsp13I	TCCGGA	2 cut(s)	218, 502
Bsp143I	GATC	4 cut(s)	30, 65, 321, 635
Bsp19I	CCATGG	1 cut(s)	592
BspACI	CCGC	2 cut(s)	123, 447
BspANI	GGCC	3 cut(s)	190, 719, 755
BspCNI	CTCAG	1 cut(s)	500
BspEI	TCCGGA	2 cut(s)	218, 502
BspPI	GGATC	1 cut(s)	73
BspQI	GCTCTTC	1 cut(s)	480
BsrBI	CCGCTC	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	159, 191
BssECI	CCNNGG	3 cut(s)	373, 517, 592
BssMI	GATC	4 cut(s)	30, 65, 321, 635
BssT1I	CCWWGG	2 cut(s)	373, 592
Bst2UI	CCWGG	2 cut(s)	24, 518
Bst4CI	ACNGT	4 cut(s)	39, 76, 397, 766
Bst6I	CTCTTC	1 cut(s)	480
BstDEI	CTNAG	4 cut(s)	149, 487, 721, 757
BstDSI	CCRYGG	1 cut(s)	592
BstF5I	GGATG	2 cut(s)	588, 769
BstKTI	GATC	4 cut(s)	33, 68, 324, 638
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	4 cut(s)	30, 65, 321, 635
BstMWI	GCNNNNNNNGC	2 cut(s)	479, 725
BstNI	CCWGG	2 cut(s)	24, 518
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	22, 516
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	65
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	65
BsuRI	GGCC	3 cut(s)	190, 719, 755
BtgI	CCRYGG	1 cut(s)	592
BtsCI	GGATG	2 cut(s)	588, 769
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	4 cut(s)	50, 62, 255, 593
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	4 cut(s)	149, 487, 721, 757
DpnI	GATC	4 cut(s)	32, 67, 323, 637
DpnII	GATC	4 cut(s)	30, 65, 321, 635
DraIII	CACNNNGTG	1 cut(s)	455
EaeI	YGGCCR	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	2 cut(s)	373, 592
Eco147I	AGGCCT	2 cut(s)	719, 755
Eco24I	GRGCYC	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoRII	CCWGG	2 cut(s)	22, 516
EcoT14I	CCWWGG	2 cut(s)	373, 592
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	2 cut(s)	373, 592
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	4 cut(s)	53, 65, 258, 596
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	4 cut(s)	49, 61, 254, 592
FauI	CCCGC	1 cut(s)	130
FauNDI	CATATG	1 cut(s)	627
Fnu4HI	GCNGC	2 cut(s)	333, 447
FokI	GGATG	2 cut(s)	575, 756
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	2 cut(s)	333, 447
GluI	GCNGC	2 cut(s)	333, 447
GsuI	CTGGAG	3 cut(s)	176, 357, 627
HaeIII	GGCC	3 cut(s)	190, 719, 755
HapII	CCGG	2 cut(s)	219, 503
Hin1II	CATG	4 cut(s)	53, 65, 258, 596
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HinfI	GANTC	4 cut(s)	339, 385, 499, 776
HpaII	CCGG	2 cut(s)	219, 503
HphI	GGTGA	2 cut(s)	280, 590
Hpy166II	GTNNAC	5 cut(s)	47, 99, 146, 271, 613
Hpy188I	TCNGA	4 cut(s)	133, 326, 412, 490
Hpy188III	TCNNGA	6 cut(s)	219, 311, 503, 606, 773, 780
Hpy8I	GTNNAC	5 cut(s)	47, 99, 146, 271, 613
HpyAV	CCTTC	1 cut(s)	569
HpyCH4III	ACNGT	4 cut(s)	39, 76, 397, 766
HpyCH4V	TGCA	2 cut(s)	392, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	479, 725
HpyF3I	CTNAG	4 cut(s)	149, 487, 721, 757
Hsp92II	CATG	4 cut(s)	53, 65, 258, 596
Kpn2I	TCCGGA	2 cut(s)	218, 502
Kzo9I	GATC	4 cut(s)	30, 65, 321, 635
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	1 cut(s)	157
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	773
MaeIII	GTNAC	1 cut(s)	760
MalI	GATC	4 cut(s)	32, 67, 323, 637
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	4 cut(s)	30, 65, 321, 635
MboII	GAAGA	2 cut(s)	308, 467
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	3 cut(s)	22, 162, 475
MlsI	TGGCCA	1 cut(s)	190
MluNI	TGGCCA	1 cut(s)	190
MlyI	GAGTC	3 cut(s)	348, 379, 508
MnlI	CCTC	7 cut(s)	94, 259, 262, 307, 665, 699, 735
Mox20I	TGGCCA	1 cut(s)	190
MroI	TCCGGA	2 cut(s)	218, 502
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	2 cut(s)	204, 802
Msp20I	TGGCCA	1 cut(s)	190
MspI	CCGG	2 cut(s)	219, 503
MspR9I	CCNGG	2 cut(s)	24, 518
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	2 cut(s)	24, 518
MwoI	GCNNNNNNNGC	2 cut(s)	479, 725
NcoI	CCATGG	1 cut(s)	592
NdeI	CATATG	1 cut(s)	627
NdeII	GATC	4 cut(s)	30, 65, 321, 635
NlaIII	CATG	4 cut(s)	53, 65, 258, 596
NspI	RCATGY	1 cut(s)	53
PceI	AGGCCT	2 cut(s)	719, 755
PciSI	GCTCTTC	1 cut(s)	480
PctI	GAATGC	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	776
PkrI	GCNGC	2 cut(s)	334, 448
PleI	GAGTC	3 cut(s)	347, 379, 507
PpsI	GAGTC	3 cut(s)	347, 379, 507
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	22, 516
PspGI	CCWGG	2 cut(s)	22, 516
PsuI	RGATCY	1 cut(s)	65
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	204, 802
SatI	GCNGC	2 cut(s)	333, 447
Sau3AI	GATC	4 cut(s)	30, 65, 321, 635
SchI	GAGTC	3 cut(s)	348, 379, 508
ScrFI	CCNGG	2 cut(s)	24, 518
SduI	GDGCHC	3 cut(s)	22, 162, 475
SfaNI	GCATC	1 cut(s)	773
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
SseBI	AGGCCT	2 cut(s)	719, 755
SsiI	CCGC	2 cut(s)	123, 447
SspI	AATATT	1 cut(s)	139
SstI	GAGCTC	1 cut(s)	162
StuI	AGGCCT	2 cut(s)	719, 755
StyD4I	CCNGG	2 cut(s)	22, 516
StyI	CCWWGG	2 cut(s)	373, 592
TaaI	ACNGT	4 cut(s)	39, 76, 397, 766
TauI	GCSGC	1 cut(s)	449
TfiI	GAWTC	1 cut(s)	776
Tru1I	TTAA	2 cut(s)	204, 802
Tru9I	TTAA	2 cut(s)	204, 802
TseI	GCWGC	1 cut(s)	332
TspDTI	ATGAA	3 cut(s)	50, 354, 758
XceI	RCATGY	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.