Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004691

Physical Location & Seq

Genomic Coordinates Reverse (-)

28731189 .. 28734700

Gene Structure 3512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G327600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAAGTGAAAGCTAGAGCTCCTGGGAAAATCATCCTCTCGGGTGAACATGCTGTTGTTCATGGATCTACAGCCATTGCTTCCTCCATTGACCTCTACACCTATGTCTCTCTTCGCTTTCCCACTCCTTCTGACAATGATGATGCATTAAGACTCCAGCTCAAGGATGTTGGATTAGAGTTTTCATGGCCAATTGGTAGAATTAAAGAAGCACTATCAGAAAAAGATATTCCCAACTCATCAGTGCCAACCTCATGTTCAATAGAGTCACTTAGATCACTTGCTGCTTTAGTTGATGAACTAAAGATTCCAGAAGCAAAAATTGGACTTGGTGCTGGAGTGTTGGCTTTTCTTTGGCTGTATTCATCTATCCAAGGATATAAGCCTGCGACTGTTGTTATTACTTCAGAACTTCCTTTGGGTTCAGGCCTGGGTTCATCTGCAGCATTTTGTGTTGCATTGTCAGCTGCTCTTCTTTCTTTCTCAGACTCTGTAAATCTGGATTTGAGCCACCAAGGGTGGTTAACTTTTGGGGAAATTGAACTTGAATTGCTGAACAAATGGGCTTTTGAAGGTGAAAAGATTATCCATGGAAAGCCATCTGGAATTGACAATACAGTTAGTACATATGGCAATATGATCAAGTTCAAATCAGGTAGCCTAACTCGCATCAAAACAAATATGACACTGAAAATGCTTATTACCAACACAAAAGTTGGGAGGAACACAAAGGCCTTAGTTGCTGGTGTTTCAGAGAGGACCTTAAGGCATCCAGAAGCTATGGCTTCTGTGTTCAATGCAGTTGATTCTATCAGCACAGAATTGGCTACGATCATCCAATCACCCGCTCCTGATGATCTCTCCTTAACTGAAAAGGAATCAAAAATAGAAGAGTTGATGGAAATGAACCAAGGTTTGCTCCAATGTATGGGGGTCAGCCATGCTTCAATTGAAACCGTTCTTCGGACAACGCTCAAATACAAGTTAGCTTCGAAATTGACAGGAGCTGGGGGTGGAGGTTGTGTTCTCACGCTATTACCAACCTTGTTATCAGGAACTGTTGTTGATAAAGTAACTTCTGAACTGGAGTCTTGTGGGTTCCATTGTTTGACGGCTGCCATTGGTGGAAATGGTGTTGAAATTTGCTTTGGCGATTCATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

388

Amino Acids

41.07

Weight (kDa)

5.49

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27450 AT5G27450 AT5G27450
fragaria_vesca	FvH4_6g05650 FvH4_6g05650
malus_domestica	MD04G1206900.v1.1 MD12G1220700.v1.1
prunus_persica	Prupe.6G327600_v2.0.a1
pyrus_communis	pycom04g18290 pycom12g20650
rosa_chinensis	RchiOBHm_Chr3g0454501 RchiOBHm_Chr7g0220931
rosa_laevigata	RLG00000002188 RLG00000002192 RLG00000025439
rosa_multiflora	Rmu_sc0002105.1_g000027 Rmu_sc0007209.1_g000003 Rmu_sc0026738.1_g000003
rosa_roxburghii	Rroxscaffold_6G00425020 Rroxscaffold_6G00425040
rosa_rugosa	Rorug03G0000100 Rorug07G0198300
rosa_samantha	Rh3AG059300 Rh3BG061400 Rh3CG060200 Rh3DG061100 Rh7DG337500
rosa_wichuraiana	Rw0G017160 Rw0G017190 Rw3G004600 Rw7G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	928
AccBSI	CCGCTC	1 cut(s)	848
AciI	CCGC	1 cut(s)	846
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	1140
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	1 cut(s)	625
AfiI	CCNNNNNNNGG	3 cut(s)	163, 928, 963
AflII	CTTAAG	1 cut(s)	763
AgsI	TTSAA	9 cut(s)	261, 542, 548, 572, 649, 796, 948, 953, 1139
AjnI	CCWGG	2 cut(s)	22, 429
AjuI	GAANNNNNNNTTGG	6 cut(s)	241, 273, 306, 338, 1131, 1163
AloI	GAACNNNNNNTCC	2 cut(s)	1008, 1040
AluBI	AGCT	7 cut(s)	14, 20, 160, 467, 779, 989, 1007
AluI	AGCT	7 cut(s)	14, 20, 160, 467, 779, 989, 1007
Alw21I	GWGCWC	1 cut(s)	22
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	73
AlwNI	CAGNNNCTG	3 cut(s)	491, 1007, 1058
Ama87I	CYCGRG	1 cut(s)	40
AoxI	GGCC	3 cut(s)	188, 427, 732
ApeKI	GCWGC	4 cut(s)	284, 443, 467, 1115
ApoI	RAATTY	1 cut(s)	1140
Asp700I	GAANNNNTTC	1 cut(s)	957
AspS9I	GGNCC	1 cut(s)	759
AsuHPI	GGTGA	3 cut(s)	56, 587, 834
AsuII	TTCGAA	1 cut(s)	992
AvaI	CYCGRG	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	759
BalI	TGGCCA	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	4 cut(s)	271, 454, 455, 1102
BccI	CCATC	2 cut(s)	607, 892
BceAI	ACGGC	1 cut(s)	1128
BciT130I	CCWGG	2 cut(s)	24, 431
BclI	TGATCA	1 cut(s)	639
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	2 cut(s)	69, 441
BfrI	CTTAAG	1 cut(s)	763
BisI	GCNGC	4 cut(s)	285, 444, 468, 1116
BlsI	GCNGC	4 cut(s)	286, 445, 469, 1117
Bme1390I	CCNGG	2 cut(s)	24, 431
Bme18I	GGWCC	1 cut(s)	759
BmeT110I	CYCGRG	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	759
BmiI	GGNNCC	1 cut(s)	1100
BmrFI	CCNGG	2 cut(s)	24, 431
BmsI	GCATC	3 cut(s)	133, 678, 778
BpmI	CTGGAG	3 cut(s)	140, 357, 1106
Bpu14I	TTCGAA	1 cut(s)	992
BpuEI	CTTGAG	1 cut(s)	146
BsaJI	CCNNGG	6 cut(s)	23, 373, 430, 514, 589, 910
BsaXI	ACNNNNNCTCC	2 cut(s)	1008, 1038
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 928, 963
Bse1I	ACTGG	1 cut(s)	1089
Bse3DI	GCAATG	1 cut(s)	75
BseBI	CCWGG	2 cut(s)	24, 431
BseDI	CCNNGG	6 cut(s)	23, 373, 430, 514, 589, 910
BseGI	GGATG	5 cut(s)	33, 172, 769, 834, 1157
BseLI	CCNNNNNNNGG	3 cut(s)	163, 928, 963
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	1089
BseXI	GCAGC	4 cut(s)	271, 454, 455, 1102
BseYI	CCCAGC	1 cut(s)	1007
BshFI	GGCC	3 cut(s)	190, 429, 734
BsiHKAI	GWGCWC	1 cut(s)	22
BsiHKCI	CYCGRG	1 cut(s)	40
BslI	CCNNNNNNNGG	3 cut(s)	163, 928, 963
BsmAI	GTCTC	1 cut(s)	112
BsnI	GGCC	3 cut(s)	190, 429, 734
BsoBI	CYCGRG	1 cut(s)	40
Bsp119I	TTCGAA	1 cut(s)	992
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	5 cut(s)	65, 275, 639, 831, 856
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	1 cut(s)	846
BspANI	GGCC	3 cut(s)	190, 429, 734
BspCNI	CTCAG	1 cut(s)	497
BspLI	GGNNCC	1 cut(s)	1100
BspMAI	CTGCAG	1 cut(s)	445
BspPI	GGATC	1 cut(s)	73
BspQI	GCTCTTC	1 cut(s)	477
BspT104I	TTCGAA	1 cut(s)	992
BspTI	CTTAAG	1 cut(s)	763
BsrBI	CCGCTC	1 cut(s)	848
BsrDI	GCAATG	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	1089
BssECI	CCNNGG	6 cut(s)	23, 373, 430, 514, 589, 910
BssMI	GATC	5 cut(s)	65, 275, 639, 831, 856
BssT1I	CCWWGG	4 cut(s)	373, 514, 589, 910
Bst2UI	CCWGG	2 cut(s)	24, 431
Bst4CI	ACNGT	4 cut(s)	394, 619, 958, 1060
Bst6I	CTCTTC	3 cut(s)	117, 477, 885
BstAFI	CTTAAG	1 cut(s)	763
BstBI	TTCGAA	1 cut(s)	992
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	3 cut(s)	272, 484, 736
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	5 cut(s)	33, 172, 769, 834, 1157
BstKTI	GATC	5 cut(s)	68, 278, 642, 834, 859
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	5 cut(s)	65, 275, 639, 831, 856
BstMWI	GCNNNNNNNGC	3 cut(s)	464, 666, 740
BstNI	CCWGG	2 cut(s)	24, 431
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	22, 429
BstSFI	CTRYAG	2 cut(s)	69, 441
BstV1I	GCAGC	4 cut(s)	271, 454, 455, 1102
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BsuRI	GGCC	3 cut(s)	190, 429, 734
BtgI	CCRYGG	1 cut(s)	589
BtsCI	GGATG	5 cut(s)	33, 172, 769, 834, 1157
BtsIMutI	CAGTG	2 cut(s)	249, 686
Cac8I	GCNNGC	1 cut(s)	387
CaiI	CAGNNNCTG	3 cut(s)	491, 1007, 1058
Cfr13I	GGNCC	1 cut(s)	759
Csp6I	GTAC	1 cut(s)	624
CviAII	CATG	6 cut(s)	50, 62, 186, 255, 590, 941
CviQI	GTAC	1 cut(s)	624
DdeI	CTNAG	3 cut(s)	272, 484, 736
DpnI	GATC	5 cut(s)	67, 277, 641, 833, 858
DpnII	GATC	5 cut(s)	65, 275, 639, 831, 856
EaeI	YGGCCR	1 cut(s)	188
Eam1104I	CTCTTC	3 cut(s)	117, 477, 885
EarI	CTCTTC	3 cut(s)	117, 477, 885
Ecl136II	GAGCTC	1 cut(s)	20
Eco130I	CCWWGG	4 cut(s)	373, 514, 589, 910
Eco147I	AGGCCT	2 cut(s)	429, 734
Eco24I	GRGCYC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	759
Eco53kI	GAGCTC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	759
EcoRII	CCWGG	2 cut(s)	22, 429
EcoT14I	CCWWGG	4 cut(s)	373, 514, 589, 910
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	22
ErhI	CCWWGG	4 cut(s)	373, 514, 589, 910
FaeI	CATG	6 cut(s)	53, 65, 189, 258, 593, 944
FatI	CATG	6 cut(s)	49, 61, 185, 254, 589, 940
FauI	CCCGC	1 cut(s)	853
FauNDI	CATATG	1 cut(s)	628
FbaI	TGATCA	1 cut(s)	639
Fnu4HI	GCNGC	4 cut(s)	285, 444, 468, 1116
FokI	GGATG	5 cut(s)	20, 179, 756, 821, 1144
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	4 cut(s)	285, 444, 468, 1116
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	4 cut(s)	285, 444, 468, 1116
GsaI	CCCAGC	1 cut(s)	1011
GsuI	CTGGAG	3 cut(s)	140, 357, 1106
HaeIII	GGCC	3 cut(s)	190, 429, 734
Hin1II	CATG	6 cut(s)	53, 65, 189, 258, 593, 944
HincII	GTYRAC	1 cut(s)	525
HindII	GTYRAC	1 cut(s)	525
HinfI	GANTC	8 cut(s)	153, 266, 307, 488, 806, 878, 1088, 1154
HpaI	GTTAAC	1 cut(s)	525
HphI	GGTGA	3 cut(s)	56, 587, 834
Hpy166II	GTNNAC	2 cut(s)	47, 525
Hpy188I	TCNGA	7 cut(s)	133, 220, 409, 487, 754, 966, 1081
Hpy188III	TCNNGA	6 cut(s)	311, 500, 603, 773, 851, 1053
Hpy8I	GTNNAC	2 cut(s)	47, 525
HpyAV	CCTTC	2 cut(s)	138, 566
HpyCH4III	ACNGT	4 cut(s)	394, 619, 958, 1060
HpyCH4V	TGCA	4 cut(s)	146, 443, 458, 800
HpyF10VI	GCNNNNNNNGC	3 cut(s)	464, 666, 740
HpyF3I	CTNAG	3 cut(s)	272, 484, 736
Hsp92II	CATG	6 cut(s)	53, 65, 189, 258, 593, 944
Ksp22I	TGATCA	1 cut(s)	639
KspAI	GTTAAC	1 cut(s)	525
Kzo9I	GATC	5 cut(s)	65, 275, 639, 831, 856
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	4 cut(s)	25, 853, 924, 1004
Lsp1109I	GCAGC	4 cut(s)	271, 454, 455, 1102
LweI	GCATC	3 cut(s)	133, 678, 778
MaeI	CTAG	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	267, 1072
MalI	GATC	5 cut(s)	67, 277, 641, 833, 858
MbiI	CCGCTC	1 cut(s)	848
MboI	GATC	5 cut(s)	65, 275, 639, 831, 856
MboII	GAAGA	4 cut(s)	104, 464, 902, 953
MfeI	CAATTG	2 cut(s)	192, 948
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	22
MlsI	TGGCCA	1 cut(s)	190
MluNI	TGGCCA	1 cut(s)	190
MlyI	GAGTC	4 cut(s)	147, 275, 482, 1097
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	7 cut(s)	47, 94, 104, 262, 714, 750, 1010
Mox20I	TGGCCA	1 cut(s)	190
Mph1103I	ATGCAT	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	957
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	5 cut(s)	149, 204, 524, 764, 866
Msp20I	TGGCCA	1 cut(s)	190
MspA1I	CMGCKG	1 cut(s)	467
MspCI	CTTAAG	1 cut(s)	763
MspR9I	CCNGG	2 cut(s)	24, 431
MunI	CAATTG	2 cut(s)	192, 948
MvaI	CCWGG	2 cut(s)	24, 431
MwoI	GCNNNNNNNGC	3 cut(s)	464, 666, 740
NcoI	CCATGG	1 cut(s)	589
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	5 cut(s)	65, 275, 639, 831, 856
NlaIII	CATG	6 cut(s)	53, 65, 189, 258, 593, 944
NlaIV	GGNNCC	1 cut(s)	1100
NmuCI	GTSAC	1 cut(s)	267
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	1 cut(s)	53
NspV	TTCGAA	1 cut(s)	992
PceI	AGGCCT	2 cut(s)	429, 734
PciSI	GCTCTTC	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	957
PfeI	GAWTC	4 cut(s)	307, 806, 878, 1154
PflMI	CCANNNNNTGG	1 cut(s)	928
PkrI	GCNGC	4 cut(s)	286, 445, 469, 1117
PleI	GAGTC	4 cut(s)	147, 274, 482, 1096
PpsI	GAGTC	4 cut(s)	147, 274, 482, 1096
PpuMI	RGGWCCY	1 cut(s)	759
Psp124BI	GAGCTC	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	759
Psp6I	CCWGG	2 cut(s)	22, 429
PspFI	CCCAGC	1 cut(s)	1007
PspGI	CCWGG	2 cut(s)	22, 429
PspN4I	GGNNCC	1 cut(s)	1100
PspPI	GGNCC	1 cut(s)	759
PspPPI	RGGWCCY	1 cut(s)	759
PstI	CTGCAG	1 cut(s)	445
PstNI	CAGNNNCTG	3 cut(s)	491, 1007, 1058
PsuI	RGATCY	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	1 cut(s)	625
RsaNI	GTAC	1 cut(s)	624
SacI	GAGCTC	1 cut(s)	22
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	5 cut(s)	149, 204, 524, 764, 866
SatI	GCNGC	4 cut(s)	285, 444, 468, 1116
Sau3AI	GATC	5 cut(s)	65, 275, 639, 831, 856
Sau96I	GGNCC	1 cut(s)	759
SchI	GAGTC	4 cut(s)	147, 275, 482, 1097
ScrFI	CCNGG	2 cut(s)	24, 431
SduI	GDGCHC	1 cut(s)	22
SfaNI	GCATC	3 cut(s)	133, 678, 778
SfcI	CTRYAG	2 cut(s)	69, 441
SfuI	TTCGAA	1 cut(s)	992
SinI	GGWCC	1 cut(s)	759
SmlI	CTYRAG	2 cut(s)	161, 763
SmoI	CTYRAG	2 cut(s)	161, 763
SseBI	AGGCCT	2 cut(s)	429, 734
SsiI	CCGC	1 cut(s)	846
SspMI	CTAG	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	22
StuI	AGGCCT	2 cut(s)	429, 734
StyD4I	CCNGG	2 cut(s)	22, 429
StyI	CCWWGG	4 cut(s)	373, 514, 589, 910
TaaI	ACNGT	4 cut(s)	394, 619, 958, 1060
TaqI	TCGA	1 cut(s)	992
TatI	WGTACW	1 cut(s)	623
TfiI	GAWTC	4 cut(s)	307, 806, 878, 1154
Tru1I	TTAA	5 cut(s)	149, 204, 524, 764, 866
Tru9I	TTAA	5 cut(s)	149, 204, 524, 764, 866
TscAI	CASTG	2 cut(s)	249, 693
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	4 cut(s)	284, 443, 467, 1115
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	7 cut(s)	50, 174, 312, 354, 426, 920, 1146
TspRI	CASTG	2 cut(s)	249, 693
Van91I	CCANNNNNTGG	1 cut(s)	928
Vha464I	CTTAAG	1 cut(s)	763
VpaK11BI	GGWCC	1 cut(s)	759
XapI	RAATTY	1 cut(s)	1140
XceI	RCATGY	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	957
XspI	CTAG	1 cut(s)	15
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.