Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0004691

Physical Location & Seq

Genomic Coordinates Reverse (-)

22071029 .. 22074338

Gene Structure 3310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g20650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAAGTGAAAGCAAGAGCTCCTGGAAAAATCATACTCTCAGGAGAACATGCTGTCGTTCATGGATCAACGGCGGTGGCTTCCTCCATTGACCTCTACACCTACGTCTCTCTTCGCTTTCCCACTCCCTCTGATAATGATGATGCACTAAGACTCCAGCTCAAGGATATTGGATTAGAGTTTTCATGGCCTATTGGTAGGATAAAAGAAGTCCTATCAGAATTAGATATTCCCAACTCATCAGTGCCAACCTCATGTTCAACGGAGTCGATTAAATCACTTGCTGCTTTGGTTGATGAACTGAACATTCCAGAGGCAAAAATTGGACTTGGTGCTGGAGTGGTGGCTTTTCTTTGGCTATATGCATCTATCCAAGGATTTAAGCCTGCTACTGTTGTTATCACTTCAGAACTTCCGTTGGGCTCAGGCCTGGGATCATCTGCTGCATTATGCGTTGCACTCTCGGGTGCTCTTCTTTCTTTCTCAGATTGTCTAAGTCTGGATTTGGGCAACAAAGAGTGGACTACTTTTGGGGAAAGTGAACTTGAATTGCTGAACAAATGGGCTTTTGAAGGTGAGAAGATCATCCACGGAAAGCCGTCTGGAATCGACAATACAGTTAGCACATACGGCAATATGATCAAGTTCAGATCAGGTAGTCTGACTCGCATCAAATCAAACATGACACTCAAAATGCTTATTACCAACACAAAAGTTGGTAGGAATACGAAGGCCTTAGTTGCTGGTGTTTCTGAGAGAACTTTAAGGCATCCGGAGGCCATGGCTTCTGTGTTTAATGCAGTGGATTCTATCAGCACGGAAGTGGCTAACATCATCCAATCGCCCGCCCCCGATGAGCTCTCCATTACTGAGAAGGAAGCGAAAATAGAAGAGTTAATGGAAATGAATCAAGGTTTGCTCCAATGTATGGGGGTCAGCCATGCTTCAATTGAAACCGTTCTTCGAACAACGCTGAAATACAAGTTAGCTTCCAAGTTGACCGGAGCTGGGGGTGGAGGTTGTGTTCTCACACTACTGCCAACCTTGCTGTCAGGAACTGTTGTTGATAAAGTAACTGCTGAACTGGAGTCTTGTGGATTCCATTGTTTGACGGCCGCCATTGGTGGAAACGGAGTCGAAATTCGCTTCGGCGGTTCGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

388

Amino Acids

40.93

Weight (kDa)

5.41

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27450 AT5G27450 AT5G27450
fragaria_vesca	FvH4_6g05650 FvH4_6g05650
malus_domestica	MD04G1206900.v1.1 MD12G1220700.v1.1
prunus_persica	Prupe.6G327600_v2.0.a1
pyrus_communis	pycom04g18290 pycom12g20650
rosa_chinensis	RchiOBHm_Chr3g0454501 RchiOBHm_Chr7g0220931
rosa_laevigata	RLG00000002188 RLG00000002192 RLG00000025439
rosa_multiflora	Rmu_sc0002105.1_g000027 Rmu_sc0007209.1_g000003 Rmu_sc0026738.1_g000003
rosa_roxburghii	Rroxscaffold_6G00425020 Rroxscaffold_6G00425040
rosa_rugosa	Rorug03G0000100 Rorug07G0198300
rosa_samantha	Rh3AG059300 Rh3BG061400 Rh3CG060200 Rh3DG061100 Rh7DG337500
rosa_wichuraiana	Rw0G017160 Rw0G017190 Rw3G004600 Rw7G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	928
AccIII	TCCGGA	1 cut(s)	772
AciI	CCGC	4 cut(s)	74, 846, 1116, 1152
AclWI	GGATC	2 cut(s)	73, 442
AcoI	YGGCCR	1 cut(s)	1113
AcsI	RAATTY	1 cut(s)	1140
AcuI	CTGAAG	1 cut(s)	390
AfiI	CCNNNNNNNGG	3 cut(s)	163, 928, 1008
AgsI	TTSAA	5 cut(s)	261, 548, 572, 948, 953
AjnI	CCWGG	2 cut(s)	22, 429
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AleI	CACNNNNGTG	1 cut(s)	821
AloI	GAACNNNNNNTCC	2 cut(s)	1008, 1040
AluBI	AGCT	5 cut(s)	20, 160, 859, 989, 1007
AluI	AGCT	5 cut(s)	20, 160, 859, 989, 1007
Alw21I	GWGCWC	3 cut(s)	22, 472, 861
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	2 cut(s)	73, 442
AlwNI	CAGNNNCTG	1 cut(s)	1058
Ama87I	CYCGRG	1 cut(s)	463
Aor13HI	TCCGGA	1 cut(s)	772
AoxI	GGCC	5 cut(s)	188, 427, 732, 777, 1113
ApeKI	GCWGC	2 cut(s)	284, 443
ApoI	RAATTY	1 cut(s)	1140
Asp700I	GAANNNNTTC	1 cut(s)	957
AsuHPI	GGTGA	1 cut(s)	587
AsuII	TTCGAA	1 cut(s)	964
AvaI	CYCGRG	1 cut(s)	463
BanII	GRGCYC	3 cut(s)	22, 425, 861
Bbv12I	GWGCWC	3 cut(s)	22, 472, 861
BbvI	GCAGC	2 cut(s)	271, 430
BceAI	ACGGC	4 cut(s)	87, 583, 646, 1128
BciT130I	CCWGG	2 cut(s)	24, 431
BclI	TGATCA	1 cut(s)	639
BcoDI	GTCTC	1 cut(s)	112
BisI	GCNGC	3 cut(s)	285, 444, 1116
BlsI	GCNGC	3 cut(s)	286, 445, 1117
Bme1390I	CCNGG	2 cut(s)	24, 431
BmeT110I	CYCGRG	1 cut(s)	463
BmrFI	CCNGG	2 cut(s)	24, 431
BmsI	GCATC	4 cut(s)	133, 374, 678, 778
BpmI	CTGGAG	3 cut(s)	140, 357, 1106
Bpu10I	CCTNAGC	1 cut(s)	424
Bpu14I	TTCGAA	1 cut(s)	964
BpuEI	CTTGAG	1 cut(s)	146
BsaJI	CCNNGG	4 cut(s)	373, 430, 589, 780
BsaWI	WCCGGW	2 cut(s)	772, 1001
BsaXI	ACNNNNNCTCC	4 cut(s)	138, 168, 1008, 1038
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 928, 1008
Bse1I	ACTGG	1 cut(s)	1089
BseAI	TCCGGA	1 cut(s)	772
BseBI	CCWGG	2 cut(s)	24, 431
BseDI	CCNNGG	4 cut(s)	373, 430, 589, 780
BseGI	GGATG	3 cut(s)	585, 769, 834
BseLI	CCNNNNNNNGG	3 cut(s)	163, 928, 1008
BseMII	CTCAG	5 cut(s)	54, 438, 498, 744, 861
BseNI	ACTGG	1 cut(s)	1089
BseX3I	CGGCCG	1 cut(s)	1113
BseXI	GCAGC	2 cut(s)	271, 430
BseYI	CCCAGC	1 cut(s)	1007
Bsh1285I	CGRYCG	1 cut(s)	1116
BshFI	GGCC	5 cut(s)	190, 429, 734, 779, 1115
BsiEI	CGRYCG	1 cut(s)	1116
BsiHKAI	GWGCWC	3 cut(s)	22, 472, 861
BsiHKCI	CYCGRG	1 cut(s)	463
BsiSI	CCGG	2 cut(s)	773, 1002
BslI	CCNNNNNNNGG	3 cut(s)	163, 928, 1008
BsmAI	GTCTC	1 cut(s)	112
BsmBI	CGTCTC	1 cut(s)	112
BsnI	GGCC	5 cut(s)	190, 429, 734, 779, 1115
BsoBI	CYCGRG	1 cut(s)	463
Bsp119I	TTCGAA	1 cut(s)	964
Bsp1286I	GDGCHC	4 cut(s)	22, 425, 472, 861
Bsp13I	TCCGGA	1 cut(s)	772
Bsp143I	GATC	5 cut(s)	65, 434, 582, 639, 650
Bsp19I	CCATGG	1 cut(s)	780
BspACI	CCGC	4 cut(s)	74, 846, 1116, 1152
BspANI	GGCC	5 cut(s)	190, 429, 734, 779, 1115
BspCNI	CTCAG	5 cut(s)	53, 437, 497, 745, 862
BspEI	TCCGGA	1 cut(s)	772
BspPI	GGATC	2 cut(s)	73, 442
BspQI	GCTCTTC	1 cut(s)	477
BspT104I	TTCGAA	1 cut(s)	964
BsrI	ACTGG	1 cut(s)	1089
BssECI	CCNNGG	4 cut(s)	373, 430, 589, 780
BssMI	GATC	5 cut(s)	65, 434, 582, 639, 650
BssT1I	CCWWGG	2 cut(s)	373, 780
Bst2UI	CCWGG	2 cut(s)	24, 431
Bst4CI	ACNGT	4 cut(s)	394, 619, 958, 1060
Bst6I	CTCTTC	3 cut(s)	117, 477, 885
BstBI	TTCGAA	1 cut(s)	964
BstC8I	GCNNGC	2 cut(s)	387, 846
BstDEI	CTNAG	8 cut(s)	40, 149, 424, 484, 494, 736, 753, 870
BstDSI	CCRYGG	2 cut(s)	589, 780
BstF5I	GGATG	3 cut(s)	585, 769, 834
BstKTI	GATC	5 cut(s)	68, 437, 585, 642, 653
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	5 cut(s)	65, 434, 582, 639, 650
BstMCI	CGRYCG	1 cut(s)	1116
BstMWI	GCNNNNNNNGC	3 cut(s)	630, 740, 1045
BstNI	CCWGG	2 cut(s)	24, 431
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	22, 429
BstV1I	GCAGC	2 cut(s)	271, 430
BstZI	CGGCCG	1 cut(s)	1113
BsuRI	GGCC	5 cut(s)	190, 429, 734, 779, 1115
BtgI	CCRYGG	2 cut(s)	589, 780
BtsCI	GGATG	3 cut(s)	585, 769, 834
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	2 cut(s)	249, 807
Cac8I	GCNNGC	2 cut(s)	387, 846
CaiI	CAGNNNCTG	1 cut(s)	1058
CspCI	CAANNNNNGTGG	2 cut(s)	57, 92
CviAII	CATG	7 cut(s)	50, 62, 186, 255, 682, 781, 941
DdeI	CTNAG	8 cut(s)	40, 149, 424, 484, 494, 736, 753, 870
DpnI	GATC	5 cut(s)	67, 436, 584, 641, 652
DpnII	GATC	5 cut(s)	65, 434, 582, 639, 650
EaeI	YGGCCR	1 cut(s)	1113
EagI	CGGCCG	1 cut(s)	1113
Eam1104I	CTCTTC	3 cut(s)	117, 477, 885
EarI	CTCTTC	3 cut(s)	117, 477, 885
Ecl136II	GAGCTC	2 cut(s)	20, 859
EclXI	CGGCCG	1 cut(s)	1113
Eco130I	CCWWGG	2 cut(s)	373, 780
Eco147I	AGGCCT	2 cut(s)	429, 734
Eco24I	GRGCYC	3 cut(s)	22, 425, 861
Eco52I	CGGCCG	1 cut(s)	1113
Eco53kI	GAGCTC	2 cut(s)	20, 859
Eco57I	CTGAAG	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	463
EcoICRI	GAGCTC	2 cut(s)	20, 859
EcoRII	CCWGG	2 cut(s)	22, 429
EcoT14I	CCWWGG	2 cut(s)	373, 780
EcoT22I	ATGCAT	1 cut(s)	367
EcoT38I	GRGCYC	3 cut(s)	22, 425, 861
ErhI	CCWWGG	2 cut(s)	373, 780
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	7 cut(s)	53, 65, 189, 258, 685, 784, 944
FatI	CATG	7 cut(s)	49, 61, 185, 254, 681, 780, 940
FauI	CCCGC	1 cut(s)	853
FbaI	TGATCA	1 cut(s)	639
Fnu4HI	GCNGC	3 cut(s)	285, 444, 1116
FokI	GGATG	3 cut(s)	572, 756, 821
FriOI	GRGCYC	3 cut(s)	22, 425, 861
Fsp4HI	GCNGC	3 cut(s)	285, 444, 1116
GluI	GCNGC	3 cut(s)	285, 444, 1116
GsaI	CCCAGC	1 cut(s)	1011
GsuI	CTGGAG	3 cut(s)	140, 357, 1106
HaeIII	GGCC	5 cut(s)	190, 429, 734, 779, 1115
HapII	CCGG	2 cut(s)	773, 1002
Hin1II	CATG	7 cut(s)	53, 65, 189, 258, 685, 784, 944
HincII	GTYRAC	1 cut(s)	999
HindII	GTYRAC	1 cut(s)	999
HinfI	GANTC	9 cut(s)	153, 266, 606, 664, 806, 907, 1088, 1098, 1134
HpaII	CCGG	2 cut(s)	773, 1002
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	3 cut(s)	522, 542, 999
Hpy188I	TCNGA	7 cut(s)	133, 220, 409, 487, 650, 663, 754
Hpy188III	TCNNGA	6 cut(s)	42, 311, 500, 603, 773, 1053
Hpy8I	GTNNAC	3 cut(s)	522, 542, 999
HpyAV	CCTTC	3 cut(s)	566, 724, 868
HpyCH4III	ACNGT	4 cut(s)	394, 619, 958, 1060
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	5 cut(s)	146, 365, 446, 458, 800
HpyF10VI	GCNNNNNNNGC	3 cut(s)	630, 740, 1045
HpyF3I	CTNAG	8 cut(s)	40, 149, 424, 484, 494, 736, 753, 870
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	7 cut(s)	53, 65, 189, 258, 685, 784, 944
Kpn2I	TCCGGA	1 cut(s)	772
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	5 cut(s)	65, 434, 582, 639, 650
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	3 cut(s)	25, 924, 1004
Lsp1109I	GCAGC	2 cut(s)	271, 430
LweI	GCATC	4 cut(s)	133, 374, 678, 778
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	1072
MalI	GATC	5 cut(s)	67, 436, 584, 641, 652
MboI	GATC	5 cut(s)	65, 434, 582, 639, 650
MboII	GAAGA	5 cut(s)	104, 464, 592, 902, 953
MfeI	CAATTG	1 cut(s)	948
MhlI	GDGCHC	4 cut(s)	22, 425, 472, 861
MluCI	AATT	5 cut(s)	221, 321, 548, 948, 1140
MlyI	GAGTC	5 cut(s)	147, 275, 658, 1097, 1143
MnlI	CCTC	7 cut(s)	94, 104, 139, 262, 307, 769, 1010
Mph1103I	ATGCAT	1 cut(s)	367
MroI	TCCGGA	1 cut(s)	772
MroXI	GAANNNNTTC	1 cut(s)	957
MseI	TTAA	5 cut(s)	273, 381, 764, 795, 896
MslI	CAYNNNNRTG	1 cut(s)	821
MspI	CCGG	2 cut(s)	773, 1002
MspR9I	CCNGG	2 cut(s)	24, 431
MunI	CAATTG	1 cut(s)	948
MvaI	CCWGG	2 cut(s)	24, 431
MwoI	GCNNNNNNNGC	3 cut(s)	630, 740, 1045
NcoI	CCATGG	1 cut(s)	780
NdeII	GATC	5 cut(s)	65, 434, 582, 639, 650
NlaIII	CATG	7 cut(s)	53, 65, 189, 258, 685, 784, 944
NsiI	ATGCAT	1 cut(s)	367
NspI	RCATGY	1 cut(s)	53
NspV	TTCGAA	1 cut(s)	964
OliI	CACNNNNGTG	1 cut(s)	821
PceI	AGGCCT	2 cut(s)	429, 734
PciSI	GCTCTTC	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	957
PfeI	GAWTC	4 cut(s)	606, 806, 907, 1098
PflMI	CCANNNNNTGG	1 cut(s)	928
PfoI	TCCNGGA	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	286, 445, 1117
PleI	GAGTC	5 cut(s)	147, 274, 658, 1096, 1142
PpsI	GAGTC	5 cut(s)	147, 274, 658, 1096, 1142
Psp124BI	GAGCTC	2 cut(s)	22, 861
Psp6I	CCWGG	2 cut(s)	22, 429
PspFI	CCCAGC	1 cut(s)	1007
PspGI	CCWGG	2 cut(s)	22, 429
PstNI	CAGNNNCTG	1 cut(s)	1058
RseI	CAYNNNNRTG	1 cut(s)	821
SacI	GAGCTC	2 cut(s)	22, 861
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	5 cut(s)	273, 381, 764, 795, 896
SatI	GCNGC	3 cut(s)	285, 444, 1116
Sau3AI	GATC	5 cut(s)	65, 434, 582, 639, 650
SchI	GAGTC	5 cut(s)	147, 275, 658, 1097, 1143
ScrFI	CCNGG	2 cut(s)	24, 431
SduI	GDGCHC	4 cut(s)	22, 425, 472, 861
SfaNI	GCATC	4 cut(s)	133, 374, 678, 778
SfuI	TTCGAA	1 cut(s)	964
SmiMI	CAYNNNNRTG	1 cut(s)	821
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	5 cut(s)	221, 321, 548, 948, 1140
SseBI	AGGCCT	2 cut(s)	429, 734
SsiI	CCGC	4 cut(s)	74, 846, 1116, 1152
SstI	GAGCTC	2 cut(s)	22, 861
StuI	AGGCCT	2 cut(s)	429, 734
StyD4I	CCNGG	2 cut(s)	22, 429
StyI	CCWWGG	2 cut(s)	373, 780
TaaI	ACNGT	4 cut(s)	394, 619, 958, 1060
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	4 cut(s)	269, 609, 964, 1137
TasI	AATT	5 cut(s)	221, 321, 548, 948, 1140
TauI	GCSGC	1 cut(s)	1118
TfiI	GAWTC	4 cut(s)	606, 806, 907, 1098
Tru1I	TTAA	5 cut(s)	273, 381, 764, 795, 896
Tru9I	TTAA	5 cut(s)	273, 381, 764, 795, 896
TscAI	CASTG	2 cut(s)	249, 807
TseI	GCWGC	2 cut(s)	284, 443
TspDTI	ATGAA	4 cut(s)	50, 174, 312, 920
TspGWI	ACGGA	5 cut(s)	278, 405, 606, 833, 1146
TspRI	CASTG	2 cut(s)	249, 807
Van91I	CCANNNNNTGG	1 cut(s)	928
XapI	RAATTY	1 cut(s)	1140
XceI	RCATGY	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	957
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.