Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00765

Orthogroup ID

OG0004691

Physical Location & Seq

Genomic Coordinates Forward (+)

13656 .. 17017

Gene Structure 3362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G017160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGAAGTAAAACCCAGAGCACCTGGAATGATCATACTGTTTGGTGAACATGCTGTGGTTCATGGATCTACTGCCGTCTCTGCCTCCATTGACCTGTGTACCTATGCCACTCTTTGCTTTCCTGCTCATTCTGATAATAATGGTTTACTTAGACTGGAGCTCAAGGATATTGGATTAGAGTTTCTGTGGCCAGTTGGTAGGATTAAGGAAGCACTATCCGGAATAGATGTTCCCAACCCATCAACACCTACCTCATGTCCAGCAGAGTTGAACAAATCACTTGCTATTTTAGTTGAAGAACTAAACATTCCAGAGGTAAAGATCGGAATAGCTGCTGGAGTCTTGGCTTTTCTTTGGCTATATTCATCTATCCAAGGGTATGGGACTCCTGCAACAGTTATTATCAGTTCGGAACTTCCTTTGGGTTCAGGTCTTGGTTTATCTGCCGCACTTTGTGTTGCATTCTCTGGTGCTCTTCTTGCTTACTCAGATTGTGCGAGTCTGGATTTCAGCCACCAGGGGTGGTTAGATTTTGGCGGAAGCGAACTTGACTTGCTGAATAAATGGGCATTTGAAGGTGAAAAAATCATCCATGGAAAGCCATCTGGAATTGACAACACAGCACATATGGTGATTATTATCTTCCTTATCTGTCTGAACTTTGTTCATGAAACGGGAAATATGATCAAGTTTAGATCAGGCAGTTTGACACGCCTCAAATCAAACATGCCACTCAAAATGCTCATTACTAACACAAAAGTTGGGAGGAACACAAAGGCCTTAATTCCAGATGCTATGGCTTCTGTGTTTAATGCAGTTGATTCTATCAGCGTGGGATTGGCTACCATTATCCAATCAGAGGCCCCTGATGAAATCTCTGTAACTGAGAAGGTGGCGAAAATAGAAGAGCTGATGGAAATGAACCAAGGCTTGCTCCAATGCACAGGGGTCAGCCATGCTTCAATCATTCTGCGAACTACACTTGGCTTCCAAGTTGACAGGATCTGGTGGTGGAGGTTGTGTTCTCACACTATTGCCAACCTGTATCCTTTTCATGATTCCTTTTATTTCATGCTATCAGCAACAGTTGTTGATAAAGTAACTGCAGAGCTGGAGTCGTGTGGATTCCATTGCTTAACAGCGGCCATTGGTGGACAAGGTGTTCAAGTTTGCTTTGGTGGTTCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

396

Amino Acids

42.56

Weight (kDa)

5.36

Isoelectric Point (pI)

30.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	128 - 208	1.4e-07	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27450 AT5G27450 AT5G27450
fragaria_vesca	FvH4_6g05650 FvH4_6g05650
malus_domestica	MD04G1206900.v1.1 MD12G1220700.v1.1
prunus_persica	Prupe.6G327600_v2.0.a1
pyrus_communis	pycom04g18290 pycom12g20650
rosa_chinensis	RchiOBHm_Chr3g0454501 RchiOBHm_Chr7g0220931
rosa_laevigata	RLG00000002188 RLG00000002192 RLG00000025439
rosa_multiflora	Rmu_sc0002105.1_g000027 Rmu_sc0007209.1_g000003 Rmu_sc0026738.1_g000003
rosa_roxburghii	Rroxscaffold_6G00425020 Rroxscaffold_6G00425040
rosa_rugosa	Rorug03G0000100 Rorug07G0198300
rosa_samantha	Rh3AG059300 Rh3BG061400 Rh3CG060200 Rh3DG061100 Rh7DG337500
rosa_wichuraiana	Rw0G017160 Rw0G017190 Rw3G004600 Rw7G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	218
AciI	CCGC	3 cut(s)	447, 537, 1142
AclWI	GGATC	2 cut(s)	73, 1010
AcoI	YGGCCR	2 cut(s)	188, 1143
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	859
AgsI	TTSAA	5 cut(s)	271, 296, 575, 963, 1166
AjnI	CCWGG	2 cut(s)	22, 516
AloI	GAACNNNNNNTCC	6 cut(s)	213, 245, 1006, 1038, 1146, 1178
AluBI	AGCT	4 cut(s)	160, 332, 910, 1111
AluI	AGCT	4 cut(s)	160, 332, 910, 1111
Alw21I	GWGCWC	3 cut(s)	22, 162, 475
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	2 cut(s)	73, 1010
AlwNI	CAGNNNCTG	1 cut(s)	1005
Aor13HI	TCCGGA	1 cut(s)	218
AoxI	GGCC	4 cut(s)	188, 777, 861, 1143
ApeKI	GCWGC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	862
AsuHPI	GGTGA	3 cut(s)	56, 590, 643
BaeI	ACNNNNGTAYC	2 cut(s)	82, 115
BalI	TGGCCA	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	3 cut(s)	22, 162, 475
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	3 cut(s)	247, 610, 907
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	2 cut(s)	24, 518
BciVI	GTATCC	1 cut(s)	1056
BclI	TGATCA	2 cut(s)	30, 684
BcoDI	GTCTC	1 cut(s)	82
BfmI	CTRYAG	1 cut(s)	1104
BfuI	GTATCC	1 cut(s)	1056
BisI	GCNGC	3 cut(s)	333, 447, 1143
BlsI	GCNGC	3 cut(s)	334, 448, 1144
Bme1390I	CCNGG	2 cut(s)	24, 518
BmgT120I	GGNCC	1 cut(s)	862
BmiI	GGNNCC	1 cut(s)	864
BmrFI	CCNGG	2 cut(s)	24, 518
BmsI	GCATC	1 cut(s)	781
BpmI	CTGGAG	3 cut(s)	176, 357, 1133
BpuEI	CTTGAG	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	638
BsaJI	CCNNGG	4 cut(s)	373, 517, 592, 925
BsaWI	WCCGGW	1 cut(s)	218
BsaXI	ACNNNNNCTCC	2 cut(s)	1006, 1036
Bsc4I	CCNNNNNNNGG	1 cut(s)	859
Bse1I	ACTGG	2 cut(s)	159, 191
Bse3DI	GCAATG	1 cut(s)	1129
Bse8I	GATNNNNATC	1 cut(s)	638
BseAI	TCCGGA	1 cut(s)	218
BseBI	CCWGG	2 cut(s)	24, 518
BseDI	CCNNGG	4 cut(s)	373, 517, 592, 925
BseGI	GGATG	2 cut(s)	588, 1184
BseJI	GATNNNNATC	1 cut(s)	638
BseLI	CCNNNNNNNGG	1 cut(s)	859
BseMI	GCAATG	1 cut(s)	1129
BseMII	CTCAG	2 cut(s)	501, 876
BseNI	ACTGG	2 cut(s)	159, 191
BseXI	GCAGC	1 cut(s)	319
BshFI	GGCC	4 cut(s)	190, 779, 863, 1145
BsiHKAI	GWGCWC	3 cut(s)	22, 162, 475
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	859
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	397
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	4 cut(s)	190, 779, 863, 1145
Bsp1286I	GDGCHC	3 cut(s)	22, 162, 475
Bsp13I	TCCGGA	1 cut(s)	218
Bsp143I	GATC	6 cut(s)	30, 65, 321, 684, 695, 1002
Bsp19I	CCATGG	1 cut(s)	592
BspACI	CCGC	3 cut(s)	447, 537, 1142
BspANI	GGCC	4 cut(s)	190, 779, 863, 1145
BspCNI	CTCAG	2 cut(s)	500, 877
BspEI	TCCGGA	1 cut(s)	218
BspHI	TCATGA	2 cut(s)	667, 1054
BspLI	GGNNCC	1 cut(s)	864
BspMAI	CTGCAG	1 cut(s)	1108
BspPI	GGATC	2 cut(s)	73, 1010
BspQI	GCTCTTC	2 cut(s)	480, 900
BsrDI	GCAATG	1 cut(s)	1129
BsrI	ACTGG	2 cut(s)	159, 191
BssECI	CCNNGG	4 cut(s)	373, 517, 592, 925
BssMI	GATC	6 cut(s)	30, 65, 321, 684, 695, 1002
BssT1I	CCWWGG	3 cut(s)	373, 592, 925
Bst2UI	CCWGG	2 cut(s)	24, 518
Bst4CI	ACNGT	3 cut(s)	39, 397, 1087
Bst6I	CTCTTC	2 cut(s)	480, 900
BstC8I	GCNNGC	1 cut(s)	932
BstDEI	CTNAG	3 cut(s)	149, 487, 885
BstDSI	CCRYGG	1 cut(s)	592
BstF5I	GGATG	2 cut(s)	588, 1184
BstKTI	GATC	6 cut(s)	33, 68, 324, 687, 698, 1005
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	6 cut(s)	30, 65, 321, 684, 695, 1002
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 479
BstNI	CCWGG	2 cut(s)	24, 518
BstNSI	RCATGY	2 cut(s)	53, 730
BstSCI	CCNGG	2 cut(s)	22, 516
BstSFI	CTRYAG	1 cut(s)	1104
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	2 cut(s)	65, 1002
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstYI	RGATCY	2 cut(s)	65, 1002
BsuI	GTATCC	1 cut(s)	1056
BsuRI	GGCC	4 cut(s)	190, 779, 863, 1145
BtgI	CCRYGG	1 cut(s)	592
BtsCI	GGATG	2 cut(s)	588, 1184
Cac8I	GCNNGC	1 cut(s)	932
CaiI	CAGNNNCTG	1 cut(s)	1005
CciI	TCATGA	2 cut(s)	667, 1054
Cfr13I	GGNCC	1 cut(s)	862
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	9 cut(s)	50, 62, 255, 593, 668, 727, 956, 1055, 1072
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	3 cut(s)	149, 487, 885
DpnI	GATC	6 cut(s)	32, 67, 323, 686, 697, 1004
DpnII	GATC	6 cut(s)	30, 65, 321, 684, 695, 1002
DraIII	CACNNNGTG	1 cut(s)	455
EaeI	YGGCCR	2 cut(s)	188, 1143
Eam1104I	CTCTTC	2 cut(s)	480, 900
EarI	CTCTTC	2 cut(s)	480, 900
EciI	GGCGGA	1 cut(s)	552
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	3 cut(s)	373, 592, 925
Eco147I	AGGCCT	1 cut(s)	779
Eco24I	GRGCYC	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	862
EcoRII	CCWGG	2 cut(s)	22, 516
EcoT14I	CCWWGG	3 cut(s)	373, 592, 925
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	3 cut(s)	373, 592, 925
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	9 cut(s)	53, 65, 258, 596, 671, 730, 959, 1058, 1075
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	9 cut(s)	49, 61, 254, 592, 667, 726, 955, 1054, 1071
FauNDI	CATATG	1 cut(s)	627
FbaI	TGATCA	2 cut(s)	30, 684
Fnu4HI	GCNGC	3 cut(s)	333, 447, 1143
FokI	GGATG	2 cut(s)	575, 1171
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	3 cut(s)	333, 447, 1143
GluI	GCNGC	3 cut(s)	333, 447, 1143
GsuI	CTGGAG	3 cut(s)	176, 357, 1133
HaeIII	GGCC	4 cut(s)	190, 779, 863, 1145
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	9 cut(s)	53, 65, 258, 596, 671, 730, 959, 1058, 1075
HincII	GTYRAC	1 cut(s)	997
HindII	GTYRAC	1 cut(s)	997
HinfI	GANTC	7 cut(s)	339, 385, 499, 821, 1058, 1115, 1125
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	3 cut(s)	56, 590, 643
Hpy166II	GTNNAC	5 cut(s)	47, 99, 146, 997, 1154
Hpy188I	TCNGA	6 cut(s)	133, 326, 412, 490, 657, 859
Hpy188III	TCNNGA	8 cut(s)	219, 311, 503, 606, 668, 788, 1055, 1188
Hpy8I	GTNNAC	5 cut(s)	47, 99, 146, 997, 1154
HpyAV	CCTTC	2 cut(s)	569, 883
HpyCH4III	ACNGT	3 cut(s)	39, 397, 1087
HpyCH4V	TGCA	5 cut(s)	392, 461, 815, 942, 1106
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 479
HpyF3I	CTNAG	3 cut(s)	149, 487, 885
Hsp92II	CATG	9 cut(s)	53, 65, 258, 596, 671, 730, 959, 1058, 1075
Kpn2I	TCCGGA	1 cut(s)	218
Ksp22I	TGATCA	2 cut(s)	30, 684
Kzo9I	GATC	6 cut(s)	30, 65, 321, 684, 695, 1002
LguI	GCTCTTC	2 cut(s)	480, 900
LmnI	GCTCC	2 cut(s)	157, 939
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	781
MaeIII	GTNAC	2 cut(s)	880, 1099
MalI	GATC	6 cut(s)	32, 67, 323, 686, 697, 1004
MboI	GATC	6 cut(s)	30, 65, 321, 684, 695, 1002
MboII	GAAGA	4 cut(s)	308, 467, 634, 917
MflI	RGATCY	2 cut(s)	65, 1002
MhlI	GDGCHC	3 cut(s)	22, 162, 475
MlsI	TGGCCA	1 cut(s)	190
MluCI	AATT	2 cut(s)	609, 783
MluNI	TGGCCA	1 cut(s)	190
MlyI	GAGTC	4 cut(s)	348, 379, 508, 1124
MnlI	CCTC	7 cut(s)	94, 262, 307, 725, 759, 853, 1008
Mox20I	TGGCCA	1 cut(s)	190
MroI	TCCGGA	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	4 cut(s)	204, 782, 810, 1136
Msp20I	TGGCCA	1 cut(s)	190
MspA1I	CMGCKG	1 cut(s)	1142
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	2 cut(s)	24, 518
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	2 cut(s)	24, 518
MwoI	GCNNNNNNNGC	2 cut(s)	80, 479
NcoI	CCATGG	1 cut(s)	592
NdeI	CATATG	1 cut(s)	627
NdeII	GATC	6 cut(s)	30, 65, 321, 684, 695, 1002
NlaIII	CATG	9 cut(s)	53, 65, 258, 596, 671, 730, 959, 1058, 1075
NlaIV	GGNNCC	1 cut(s)	864
NspI	RCATGY	2 cut(s)	53, 730
PagI	TCATGA	2 cut(s)	667, 1054
PceI	AGGCCT	1 cut(s)	779
PciSI	GCTCTTC	2 cut(s)	480, 900
PctI	GAATGC	1 cut(s)	461
PfeI	GAWTC	3 cut(s)	821, 1058, 1125
PkrI	GCNGC	3 cut(s)	334, 448, 1144
PleI	GAGTC	4 cut(s)	347, 379, 507, 1123
PpsI	GAGTC	4 cut(s)	347, 379, 507, 1123
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	22, 516
PspGI	CCWGG	2 cut(s)	22, 516
PspN4I	GGNNCC	1 cut(s)	864
PspPI	GGNCC	1 cut(s)	862
PstI	CTGCAG	1 cut(s)	1108
PstNI	CAGNNNCTG	1 cut(s)	1005
PsuI	RGATCY	2 cut(s)	65, 1002
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	162
SapI	GCTCTTC	2 cut(s)	480, 900
SaqAI	TTAA	4 cut(s)	204, 782, 810, 1136
SatI	GCNGC	3 cut(s)	333, 447, 1143
Sau3AI	GATC	6 cut(s)	30, 65, 321, 684, 695, 1002
Sau96I	GGNCC	1 cut(s)	862
SchI	GAGTC	4 cut(s)	348, 379, 508, 1124
ScrFI	CCNGG	2 cut(s)	24, 518
SduI	GDGCHC	3 cut(s)	22, 162, 475
SfaNI	GCATC	1 cut(s)	781
SfcI	CTRYAG	1 cut(s)	1104
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	2 cut(s)	609, 783
SseBI	AGGCCT	1 cut(s)	779
SsiI	CCGC	3 cut(s)	447, 537, 1142
SstI	GAGCTC	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	779
StyD4I	CCNGG	2 cut(s)	22, 516
StyI	CCWWGG	3 cut(s)	373, 592, 925
TaaI	ACNGT	3 cut(s)	39, 397, 1087
TasI	AATT	2 cut(s)	609, 783
TauI	GCSGC	2 cut(s)	449, 1145
TfiI	GAWTC	3 cut(s)	821, 1058, 1125
Tru1I	TTAA	4 cut(s)	204, 782, 810, 1136
Tru9I	TTAA	4 cut(s)	204, 782, 810, 1136
TseI	GCWGC	1 cut(s)	332
TspDTI	ATGAA	9 cut(s)	50, 354, 656, 684, 885, 935, 1043, 1060, 1173
XceI	RCATGY	2 cut(s)	53, 730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.