Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004691

Physical Location & Seq

Genomic Coordinates Reverse (-)

45766805 .. 45770169

Gene Structure 3365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025439

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAAGTGAAAGCCAGAGCACCTGGGAAGATCATACTGTCTGGTGAACATGCTGTGGTTCATGGATCTACGGCCGTCGCTGCCTCCATTGACCTTTGTACCTATGCAACTCTTCGCTTTCCCGCTCATTCTGATAATGATGGTTTACTTAGACTGGAGCTCAAGGATATTGGATTAGAGTTTTCGTGGCCGGTTGTTAGGATTAAGGAAGCACTATCCGGAATAGATGTTCCCAACCCATCAACACCTACCTCTTGTCCAGCGGAGGCGATCAAATCACTTGCTATTTTAGTTGAAGAACTAAACATTCCGGAGGCAAAAATAGGAATTGCTGCTGGAGTCTTGGCTTTTCTTTGGCTGTATTCATCTATCCAAGGATTTAAGCCTGCAACAATTATTATCAGTTCGGAACTTCCTTTGGGTTCAGGTCTTGGTTCATCTGCGGCACTTTGTGTTGCATTCTCTGGTGCTCTTCTTGCTTACTCAGATTGTGCGAGTCTGGATTTCAGCCACCAAGGGTGGTTAAATTTTGGCGAAAGCGAACTTGACTTACTGAATAAATGGGCATTTGAAGGTGAGAAAATCATCCATGGAAGGCCATCTGGAATTGACAACACGGTCAGCACATATGGTAATATGATCAAATTTAGATCAGGCAGTTTGACACGCCTCAAATCGAATATGCCACTCAAAATGCTCATTACTAACACAAATGTTGGGAGGAACACAAAGGCTTTAGTTGCTGGTGTTTCAGAGAGGACATTAAATCATCCAGATGCTATGGCTTCTGTGTTTAACGCAGTTGATTCTATCAGCGGGGAATTGGCTACCATCATCCAATCAGAGGCCTCTGATGAAATCTCTGTAACCGAAAAGGAGGCGAAAATAGAAGAGCTGATGGAAATGAACCAAGGTTTGCTCCAATGCATGGGGGTCAGCCATGCTTCAATTGAAACCATTCTTCGAACTACACTCAAATACAAGTTGGCTTCCAAGTTGACAGGAGCTGGTGGTGGAGGTTGTGTTCTCACACTATTGCCAACCTTGCTATCAGCAATAGTTGTTGATAAAGTAACTGCAGAACTGGAGTCGTGTGGATTCCATTGCGTAACAGCGGCCATTGGCGGACAAGGTGTTCAAGTTTGCTTTGGTGGTTCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

388

Amino Acids

40.72

Weight (kDa)

5.35

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	125 - 211	4.4e-10	GHMP kinases N terminal domain
GHMP_kinases_C	PF08544	295 - 348	3.2e-07	GHMP kinases C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27450 AT5G27450 AT5G27450
fragaria_vesca	FvH4_6g05650 FvH4_6g05650
malus_domestica	MD04G1206900.v1.1 MD12G1220700.v1.1
prunus_persica	Prupe.6G327600_v2.0.a1
pyrus_communis	pycom04g18290 pycom12g20650
rosa_chinensis	RchiOBHm_Chr3g0454501 RchiOBHm_Chr7g0220931
rosa_laevigata	RLG00000002188 RLG00000002192 RLG00000025439
rosa_multiflora	Rmu_sc0002105.1_g000027 Rmu_sc0007209.1_g000003 Rmu_sc0026738.1_g000003
rosa_roxburghii	Rroxscaffold_6G00425020 Rroxscaffold_6G00425040
rosa_rugosa	Rorug03G0000100 Rorug07G0198300
rosa_samantha	Rh3AG059300 Rh3BG061400 Rh3CG060200 Rh3DG061100 Rh7DG337500
rosa_wichuraiana	Rw0G017160 Rw0G017190 Rw3G004600 Rw7G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	617
AccB7I	CCANNNNNTGG	1 cut(s)	928
AccBSI	CCGCTC	1 cut(s)	125
AccIII	TCCGGA	2 cut(s)	218, 310
AciI	CCGC	6 cut(s)	123, 263, 443, 816, 1115, 1125
AclWI	GGATC	1 cut(s)	73
AcoI	YGGCCR	3 cut(s)	72, 188, 1116
AcsI	RAATTY	2 cut(s)	526, 644
AdeI	CACNNNGTG	1 cut(s)	452
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	2 cut(s)	844, 928
AgsI	TTSAA	5 cut(s)	296, 572, 948, 953, 1139
AjnI	CCWGG	1 cut(s)	22
AloI	GAACNNNNNNTCC	6 cut(s)	213, 245, 1008, 1040, 1119, 1151
AluBI	AGCT	3 cut(s)	160, 895, 1007
AluI	AGCT	3 cut(s)	160, 895, 1007
Alw21I	GWGCWC	3 cut(s)	22, 162, 472
AlwI	GGATC	1 cut(s)	73
AlwNI	CAGNNNCTG	1 cut(s)	1007
Aor13HI	TCCGGA	2 cut(s)	218, 310
AoxI	GGCC	5 cut(s)	72, 188, 596, 846, 1116
ApeKI	GCWGC	2 cut(s)	80, 332
ApoI	RAATTY	2 cut(s)	526, 644
Asp700I	GAANNNNTTC	1 cut(s)	957
AsuHPI	GGTGA	2 cut(s)	56, 587
AsuII	TTCGAA	1 cut(s)	964
BaeI	ACNNNNGTAYC	2 cut(s)	82, 115
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	3 cut(s)	22, 162, 472
BbvI	GCAGC	2 cut(s)	67, 319
BccI	CCATC	5 cut(s)	134, 247, 607, 839, 892
BceAI	ACGGC	2 cut(s)	59, 87
BciT130I	CCWGG	1 cut(s)	24
BclI	TGATCA	1 cut(s)	639
BfmI	CTRYAG	1 cut(s)	1077
BisI	GCNGC	4 cut(s)	81, 333, 444, 1116
BlsI	GCNGC	4 cut(s)	82, 334, 445, 1117
Bme1390I	CCNGG	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	766
BpmI	CTGGAG	3 cut(s)	176, 357, 1106
Bpu14I	TTCGAA	1 cut(s)	964
BpuEI	CTTGAG	1 cut(s)	146
BsaJI	CCNNGG	5 cut(s)	23, 373, 514, 589, 910
BsaWI	WCCGGW	2 cut(s)	218, 310
BsaXI	ACNNNNNCTCC	2 cut(s)	1008, 1038
Bsc4I	CCNNNNNNNGG	2 cut(s)	844, 928
Bse118I	RCCGGY	1 cut(s)	190
Bse1I	ACTGG	2 cut(s)	159, 1089
Bse3DI	GCAATG	1 cut(s)	1102
BseAI	TCCGGA	2 cut(s)	218, 310
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	5 cut(s)	23, 373, 514, 589, 910
BseGI	GGATG	4 cut(s)	585, 769, 834, 1157
BseLI	CCNNNNNNNGG	2 cut(s)	844, 928
BseMI	GCAATG	1 cut(s)	1102
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	2 cut(s)	159, 1089
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	67, 319
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	5 cut(s)	74, 190, 598, 848, 1118
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	3 cut(s)	22, 162, 472
BsiSI	CCGG	3 cut(s)	191, 219, 311
BslI	CCNNNNNNNGG	2 cut(s)	844, 928
BsmI	GAATGC	1 cut(s)	458
BsnI	GGCC	5 cut(s)	74, 190, 598, 848, 1118
Bsp119I	TTCGAA	1 cut(s)	964
Bsp1286I	GDGCHC	3 cut(s)	22, 162, 472
Bsp13I	TCCGGA	2 cut(s)	218, 310
Bsp143I	GATC	5 cut(s)	30, 65, 270, 639, 650
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	6 cut(s)	123, 263, 443, 816, 1115, 1125
BspANI	GGCC	5 cut(s)	74, 190, 598, 848, 1118
BspCNI	CTCAG	1 cut(s)	497
BspEI	TCCGGA	2 cut(s)	218, 310
BspMAI	CTGCAG	1 cut(s)	1081
BspPI	GGATC	1 cut(s)	73
BspQI	GCTCTTC	2 cut(s)	477, 885
BspT104I	TTCGAA	1 cut(s)	964
BsrBI	CCGCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	1102
BsrFI	RCCGGY	1 cut(s)	190
BsrI	ACTGG	2 cut(s)	159, 1089
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	5 cut(s)	23, 373, 514, 589, 910
BssMI	GATC	5 cut(s)	30, 65, 270, 639, 650
BssT1I	CCWWGG	4 cut(s)	373, 514, 589, 910
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	39, 619
Bst6I	CTCTTC	3 cut(s)	117, 477, 885
BstBI	TTCGAA	1 cut(s)	964
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	2 cut(s)	149, 484
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	4 cut(s)	585, 769, 834, 1157
BstKTI	GATC	5 cut(s)	33, 68, 273, 642, 653
BstMBI	GATC	5 cut(s)	30, 65, 270, 639, 650
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 476, 740, 1045
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	1077
BstV1I	GCAGC	2 cut(s)	67, 319
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	5 cut(s)	74, 190, 598, 848, 1118
BtgI	CCRYGG	1 cut(s)	589
BtsCI	GGATG	4 cut(s)	585, 769, 834, 1157
Cac8I	GCNNGC	1 cut(s)	387
CaiI	CAGNNNCTG	1 cut(s)	1007
Cfr10I	RCCGGY	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	5 cut(s)	50, 62, 590, 928, 941
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	2 cut(s)	149, 484
DpnI	GATC	5 cut(s)	32, 67, 272, 641, 652
DpnII	GATC	5 cut(s)	30, 65, 270, 639, 650
DraIII	CACNNNGTG	1 cut(s)	452
DrdI	GACNNNNNNGTC	1 cut(s)	617
DseDI	GACNNNNNNGTC	1 cut(s)	617
EaeI	YGGCCR	3 cut(s)	72, 188, 1116
EagI	CGGCCG	1 cut(s)	72
Eam1104I	CTCTTC	3 cut(s)	117, 477, 885
EarI	CTCTTC	3 cut(s)	117, 477, 885
EciI	GGCGGA	1 cut(s)	1140
Ecl136II	GAGCTC	1 cut(s)	160
EclXI	CGGCCG	1 cut(s)	72
Eco130I	CCWWGG	4 cut(s)	373, 514, 589, 910
Eco147I	AGGCCT	1 cut(s)	848
Eco24I	GRGCYC	1 cut(s)	162
Eco52I	CGGCCG	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	4 cut(s)	373, 514, 589, 910
EcoT22I	ATGCAT	1 cut(s)	929
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	4 cut(s)	373, 514, 589, 910
FaeI	CATG	5 cut(s)	53, 65, 593, 931, 944
FatI	CATG	5 cut(s)	49, 61, 589, 927, 940
FauI	CCCGC	2 cut(s)	130, 809
FauNDI	CATATG	1 cut(s)	628
FbaI	TGATCA	1 cut(s)	639
Fnu4HI	GCNGC	4 cut(s)	81, 333, 444, 1116
FokI	GGATG	4 cut(s)	572, 756, 821, 1144
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	4 cut(s)	81, 333, 444, 1116
GluI	GCNGC	4 cut(s)	81, 333, 444, 1116
GsuI	CTGGAG	3 cut(s)	176, 357, 1106
HaeIII	GGCC	5 cut(s)	74, 190, 598, 848, 1118
HapII	CCGG	3 cut(s)	191, 219, 311
Hin1II	CATG	5 cut(s)	53, 65, 593, 931, 944
HincII	GTYRAC	1 cut(s)	999
HindII	GTYRAC	1 cut(s)	999
HinfI	GANTC	5 cut(s)	339, 496, 806, 1088, 1098
HpaII	CCGG	3 cut(s)	191, 219, 311
HphI	GGTGA	2 cut(s)	56, 587
Hpy166II	GTNNAC	3 cut(s)	47, 146, 999
Hpy188I	TCNGA	6 cut(s)	133, 409, 487, 754, 844, 853
Hpy188III	TCNNGA	6 cut(s)	219, 311, 500, 603, 773, 1161
Hpy8I	GTNNAC	3 cut(s)	47, 146, 999
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	566, 588
HpyCH4III	ACNGT	2 cut(s)	39, 619
HpyCH4V	TGCA	5 cut(s)	107, 389, 458, 927, 1079
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 476, 740, 1045
HpyF3I	CTNAG	2 cut(s)	149, 484
Hsp92II	CATG	5 cut(s)	53, 65, 593, 931, 944
Kpn2I	TCCGGA	2 cut(s)	218, 310
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	5 cut(s)	30, 65, 270, 639, 650
LguI	GCTCTTC	2 cut(s)	477, 885
LmnI	GCTCC	3 cut(s)	157, 924, 1004
Lsp1109I	GCAGC	2 cut(s)	67, 319
LweI	GCATC	1 cut(s)	766
MaeIII	GTNAC	3 cut(s)	865, 1072, 1108
MalI	GATC	5 cut(s)	32, 67, 272, 641, 652
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	5 cut(s)	30, 65, 270, 639, 650
MboII	GAAGA	6 cut(s)	40, 104, 308, 464, 902, 953
MfeI	CAATTG	1 cut(s)	948
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	3 cut(s)	22, 162, 472
MluCI	AATT	7 cut(s)	327, 393, 526, 606, 644, 821, 948
MlyI	GAGTC	3 cut(s)	348, 505, 1097
Mph1103I	ATGCAT	1 cut(s)	929
MroI	TCCGGA	2 cut(s)	218, 310
MroXI	GAANNNNTTC	1 cut(s)	957
MseI	TTAA	5 cut(s)	204, 381, 524, 764, 795
MslI	CAYNNNNRTG	1 cut(s)	774
MspA1I	CMGCKG	3 cut(s)	263, 816, 1115
MspI	CCGG	3 cut(s)	191, 219, 311
MspR9I	CCNGG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	948
Mva1269I	GAATGC	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	4 cut(s)	80, 476, 740, 1045
NcoI	CCATGG	1 cut(s)	589
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	5 cut(s)	30, 65, 270, 639, 650
NlaIII	CATG	5 cut(s)	53, 65, 593, 931, 944
NsiI	ATGCAT	1 cut(s)	929
NspI	RCATGY	1 cut(s)	53
NspV	TTCGAA	1 cut(s)	964
PceI	AGGCCT	1 cut(s)	848
PciSI	GCTCTTC	2 cut(s)	477, 885
PctI	GAATGC	1 cut(s)	458
PdmI	GAANNNNTTC	1 cut(s)	957
PfeI	GAWTC	2 cut(s)	806, 1098
PflMI	CCANNNNNTGG	1 cut(s)	928
PkrI	GCNGC	4 cut(s)	82, 334, 445, 1117
PleI	GAGTC	3 cut(s)	347, 504, 1096
PpsI	GAGTC	3 cut(s)	347, 504, 1096
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PsrI	GAACNNNNNNTAC	2 cut(s)	534, 566
PstI	CTGCAG	1 cut(s)	1081
PstNI	CAGNNNCTG	1 cut(s)	1007
PsuI	RGATCY	1 cut(s)	65
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	774
SacI	GAGCTC	1 cut(s)	162
SapI	GCTCTTC	2 cut(s)	477, 885
SaqAI	TTAA	5 cut(s)	204, 381, 524, 764, 795
SatI	GCNGC	4 cut(s)	81, 333, 444, 1116
Sau3AI	GATC	5 cut(s)	30, 65, 270, 639, 650
SchI	GAGTC	3 cut(s)	348, 505, 1097
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	3 cut(s)	22, 162, 472
SfaNI	GCATC	1 cut(s)	766
SfcI	CTRYAG	1 cut(s)	1077
SfuI	TTCGAA	1 cut(s)	964
SmiMI	CAYNNNNRTG	1 cut(s)	774
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	7 cut(s)	327, 393, 526, 606, 644, 821, 948
SseBI	AGGCCT	1 cut(s)	848
SsiI	CCGC	6 cut(s)	123, 263, 443, 816, 1115, 1125
SstI	GAGCTC	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	848
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	4 cut(s)	373, 514, 589, 910
TaaI	ACNGT	2 cut(s)	39, 619
TaqI	TCGA	2 cut(s)	677, 964
TasI	AATT	7 cut(s)	327, 393, 526, 606, 644, 821, 948
TauI	GCSGC	2 cut(s)	446, 1118
TfiI	GAWTC	2 cut(s)	806, 1098
Tru1I	TTAA	5 cut(s)	204, 381, 524, 764, 795
Tru9I	TTAA	5 cut(s)	204, 381, 524, 764, 795
TseI	GCWGC	2 cut(s)	80, 332
TspDTI	ATGAA	6 cut(s)	50, 354, 426, 870, 920, 1146
Van91I	CCANNNNNTGG	1 cut(s)	928
XapI	RAATTY	2 cut(s)	526, 644
XceI	RCATGY	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	957
Zsp2I	ATGCAT	1 cut(s)	929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.