Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004691

Physical Location & Seq

Genomic Coordinates Reverse (-)

20373824 .. 20377153

Gene Structure 3330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g18290.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGAAGTGAAGGCAAGAGCACCTGGAAAAATCATACTCTCGGGGGAACATGCTGTTGTTCATGGAACGACGGCGGTGGCTTCCTCCATTGACCTTTACACCTACGTCTCTCTTCGCTTTCCCACTCCCTCTGATAGTGATGATGCACTAAGACTCCAGCTCAAGGATGTTGGATTAGAGTTTTCATGGCCTATTGTGCCAACCTCATGTTCACTGGAGTCGACTAAATCACTTGCTGCTTTAGTTGATGAACTGAAGATTCCAGAGGCAAACATTGGACTTGGTGCTGGAGTGTTGGCTTTTCTTTGGCTATATTCATCTATCCAAGGATTTAAACCTGCTACTGTTGTTGTCACTTCAGAACTTCCGTTGGGTTCAGGCCTGGGATCATCCGCCGCATTCTGTGTTGCACTCTCGGGTGCTCTTCTTTCTTTCTCAAATTCTGTAAGTCTGGATTTGAGCCACAAAGAGTGGACCAGTTTTGGGGACAGTGAACTTGATTTGCTGAACAAATGGGCTTTTGAAGGTGAAATGATCATCCATGGAAAGCCATCTGGAATCGACAATACAGTTAGCACATACGGCAATATGATCAAGTTTCGCTCAGGTAGTCTGACTCGTATCAAATCGAACACAACACTCAAAATGCTTATTACCAACACAAAAGTTGGGAGGAACACGAAGGCCTTAGTCGCTGGTGTTTCGGAGAGAACTTTAAGGCATCCAAAGGGCATGGCTTCTGTGTTTAACGCAGTGGATTCTATCAGCACGGAAATGGCTAACATCATCCAATCGTCTGCGCCCGATGATCTCTCCATCACTGAGATGGAAGCGAAAATAGAAGAGTTAATGGAAATGAATCAAGGTCTGCTCCAATGTATGGGGGTCAGCCACGCTTCAATTGAAACCGTTATCCGAACAACGTTGAAATACAAGTTAGCTTCCAATCTGACGGGAGCTGGGGGTGGAGGTTGTGTTCTCACGCTGCTGCCAACCTTGCTATCAGGAACTGTTGTTCATAAAGTAACTGCTGAGCTGGAGTCTTGTGGATTCCTTTGTCTGACGGCCGCCATCGGTGGAAACGGAGTTGAAATTTGCTTCGGCGGTTCATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

372

Amino Acids

39.07

Weight (kDa)

5.56

Isoelectric Point (pI)

31.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27450 AT5G27450 AT5G27450
fragaria_vesca	FvH4_6g05650 FvH4_6g05650
malus_domestica	MD04G1206900.v1.1 MD12G1220700.v1.1
prunus_persica	Prupe.6G327600_v2.0.a1
pyrus_communis	pycom04g18290 pycom12g20650
rosa_chinensis	RchiOBHm_Chr3g0454501 RchiOBHm_Chr7g0220931
rosa_laevigata	RLG00000002188 RLG00000002192 RLG00000025439
rosa_multiflora	Rmu_sc0002105.1_g000027 Rmu_sc0007209.1_g000003 Rmu_sc0026738.1_g000003
rosa_roxburghii	Rroxscaffold_6G00425020 Rroxscaffold_6G00425040
rosa_rugosa	Rorug03G0000100 Rorug07G0198300
rosa_samantha	Rh3AG059300 Rh3BG061400 Rh3CG060200 Rh3DG061100 Rh7DG337500
rosa_wichuraiana	Rw0G017160 Rw0G017190 Rw3G004600 Rw7G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	346
AccB7I	CCANNNNNTGG	1 cut(s)	880
AccI	GTMKAC	1 cut(s)	221
AciI	CCGC	5 cut(s)	74, 393, 396, 1068, 1104
AclI	AACGTT	1 cut(s)	923
AclWI	GGATC	1 cut(s)	394
AcoI	YGGCCR	1 cut(s)	1065
AcsI	RAATTY	2 cut(s)	439, 1092
AcuI	CTGAAG	2 cut(s)	275, 342
AfiI	CCNNNNNNNGG	3 cut(s)	163, 483, 880
AgsI	TTSAA	5 cut(s)	524, 900, 905, 928, 1091
AjnI	CCWGG	2 cut(s)	22, 381
AjuI	GAANNNNNNNTTGG	2 cut(s)	193, 225
AloI	GAACNNNNNNTCC	4 cut(s)	960, 992, 999, 1031
AluBI	AGCT	4 cut(s)	160, 941, 959, 1036
AluI	AGCT	4 cut(s)	160, 941, 959, 1036
Alw21I	GWGCWC	2 cut(s)	22, 424
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	394
AlwNI	CAGNNNCTG	1 cut(s)	1010
Ama87I	CYCGRG	2 cut(s)	40, 415
AoxI	GGCC	4 cut(s)	188, 379, 684, 1065
ApeKI	GCWGC	3 cut(s)	236, 985, 988
ApoI	RAATTY	2 cut(s)	439, 1092
AspLEI	GCGC	1 cut(s)	802
AspS9I	GGNCC	1 cut(s)	474
AsuHPI	GGTGA	1 cut(s)	539
AvaI	CYCGRG	2 cut(s)	40, 415
AvaII	GGWCC	1 cut(s)	474
Bbv12I	GWGCWC	2 cut(s)	22, 424
BbvI	GCAGC	3 cut(s)	223, 972, 975
BccI	CCATC	4 cut(s)	559, 820, 824, 1079
BceAI	ACGGC	3 cut(s)	87, 598, 1080
BciT130I	CCWGG	2 cut(s)	24, 383
BclI	TGATCA	2 cut(s)	534, 591
BcoDI	GTCTC	1 cut(s)	112
BfuAI	ACCTGC	1 cut(s)	346
BisI	GCNGC	5 cut(s)	237, 396, 986, 989, 1068
BlpI	GCTNAGC	1 cut(s)	1032
BlsI	GCNGC	5 cut(s)	238, 397, 987, 990, 1069
Bme1390I	CCNGG	2 cut(s)	24, 383
Bme18I	GGWCC	1 cut(s)	474
BmeT110I	CYCGRG	2 cut(s)	40, 415
BmgT120I	GGNCC	1 cut(s)	474
BmrFI	CCNGG	2 cut(s)	24, 383
BmsI	GCATC	2 cut(s)	133, 730
BpmI	CTGGAG	4 cut(s)	140, 236, 309, 1058
Bpu10I	CCTNAGC	1 cut(s)	604
Bpu1102I	GCTNAGC	1 cut(s)	1032
BpuEI	CTTGAG	1 cut(s)	146
BsaJI	CCNNGG	3 cut(s)	325, 382, 541
BsaXI	ACNNNNNCTCC	4 cut(s)	138, 168, 960, 990
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 483, 880
Bse1I	ACTGG	2 cut(s)	219, 477
BseBI	CCWGG	2 cut(s)	24, 383
BseDI	CCNNGG	3 cut(s)	325, 382, 541
BseGI	GGATG	5 cut(s)	172, 389, 537, 721, 786
BseLI	CCNNNNNNNGG	3 cut(s)	163, 483, 880
BseMII	CTCAG	3 cut(s)	618, 813, 1023
BseNI	ACTGG	2 cut(s)	219, 477
BseX3I	CGGCCG	1 cut(s)	1065
BseXI	GCAGC	3 cut(s)	223, 972, 975
BseYI	CCCAGC	1 cut(s)	959
Bsh1285I	CGRYCG	1 cut(s)	1068
BshFI	GGCC	4 cut(s)	190, 381, 686, 1067
BsiEI	CGRYCG	1 cut(s)	1068
BsiHKAI	GWGCWC	2 cut(s)	22, 424
BsiHKCI	CYCGRG	2 cut(s)	40, 415
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	3 cut(s)	163, 483, 880
BsmAI	GTCTC	1 cut(s)	112
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	500
BsmI	GAATGC	1 cut(s)	398
BsnI	GGCC	4 cut(s)	190, 381, 686, 1067
BsoBI	CYCGRG	2 cut(s)	40, 415
Bsp1286I	GDGCHC	2 cut(s)	22, 424
Bsp143I	GATC	4 cut(s)	386, 534, 591, 808
Bsp1720I	GCTNAGC	1 cut(s)	1032
Bsp19I	CCATGG	1 cut(s)	541
BspACI	CCGC	5 cut(s)	74, 393, 396, 1068, 1104
BspANI	GGCC	4 cut(s)	190, 381, 686, 1067
BspCNI	CTCAG	3 cut(s)	617, 814, 1024
BspMI	ACCTGC	1 cut(s)	346
BspPI	GGATC	1 cut(s)	394
BspQI	GCTCTTC	1 cut(s)	429
BsrI	ACTGG	2 cut(s)	219, 477
BssECI	CCNNGG	3 cut(s)	325, 382, 541
BssMI	GATC	4 cut(s)	386, 534, 591, 808
BssT1I	CCWWGG	2 cut(s)	325, 541
Bst2UI	CCWGG	2 cut(s)	24, 383
Bst4CI	ACNGT	5 cut(s)	346, 491, 571, 910, 1012
Bst6I	CTCTTC	3 cut(s)	117, 429, 837
BstDEI	CTNAG	5 cut(s)	149, 604, 688, 822, 1032
BstDSI	CCRYGG	1 cut(s)	541
BstF5I	GGATG	5 cut(s)	172, 389, 537, 721, 786
BstHHI	GCGC	1 cut(s)	802
BstKTI	GATC	4 cut(s)	389, 537, 594, 811
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	4 cut(s)	386, 534, 591, 808
BstMCI	CGRYCG	1 cut(s)	1068
BstMWI	GCNNNNNNNGC	4 cut(s)	196, 582, 692, 997
BstNI	CCWGG	2 cut(s)	24, 383
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	22, 381
BstV1I	GCAGC	3 cut(s)	223, 972, 975
BstZI	CGGCCG	1 cut(s)	1065
BsuRI	GGCC	4 cut(s)	190, 381, 686, 1067
BtgI	CCRYGG	1 cut(s)	541
BtsCI	GGATG	5 cut(s)	172, 389, 537, 721, 786
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	4 cut(s)	212, 496, 759, 819
BveI	ACCTGC	1 cut(s)	346
CaiI	CAGNNNCTG	1 cut(s)	1010
CfoI	GCGC	1 cut(s)	802
Cfr13I	GGNCC	1 cut(s)	474
CviAII	CATG	6 cut(s)	50, 62, 186, 207, 542, 733
DdeI	CTNAG	5 cut(s)	149, 604, 688, 822, 1032
DpnI	GATC	4 cut(s)	388, 536, 593, 810
DpnII	GATC	4 cut(s)	386, 534, 591, 808
DraI	TTTAAA	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	1065
EagI	CGGCCG	1 cut(s)	1065
Eam1104I	CTCTTC	3 cut(s)	117, 429, 837
EarI	CTCTTC	3 cut(s)	117, 429, 837
EciI	GGCGGA	1 cut(s)	382
EclXI	CGGCCG	1 cut(s)	1065
Eco130I	CCWWGG	2 cut(s)	325, 541
Eco147I	AGGCCT	2 cut(s)	381, 686
Eco47I	GGWCC	1 cut(s)	474
Eco52I	CGGCCG	1 cut(s)	1065
Eco57I	CTGAAG	2 cut(s)	275, 342
Eco88I	CYCGRG	2 cut(s)	40, 415
EcoRII	CCWGG	2 cut(s)	22, 381
EcoT14I	CCWWGG	2 cut(s)	325, 541
ErhI	CCWWGG	2 cut(s)	325, 541
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	6 cut(s)	53, 65, 189, 210, 545, 736
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	6 cut(s)	49, 61, 185, 206, 541, 732
FbaI	TGATCA	2 cut(s)	534, 591
FblI	GTMKAC	1 cut(s)	221
Fnu4HI	GCNGC	5 cut(s)	237, 396, 986, 989, 1068
FokI	GGATG	5 cut(s)	179, 376, 524, 708, 773
Fsp4HI	GCNGC	5 cut(s)	237, 396, 986, 989, 1068
GlaI	GCGC	1 cut(s)	801
GluI	GCNGC	5 cut(s)	237, 396, 986, 989, 1068
GsaI	CCCAGC	1 cut(s)	963
GsuI	CTGGAG	4 cut(s)	140, 236, 309, 1058
HaeIII	GGCC	4 cut(s)	190, 381, 686, 1067
HhaI	GCGC	1 cut(s)	802
Hin1II	CATG	6 cut(s)	53, 65, 189, 210, 545, 736
Hin6I	GCGC	1 cut(s)	800
HinP1I	GCGC	1 cut(s)	800
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	9 cut(s)	153, 218, 259, 558, 616, 758, 859, 1040, 1050
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	4 cut(s)	212, 222, 474, 494
Hpy188I	TCNGA	7 cut(s)	133, 361, 615, 706, 917, 951, 1062
Hpy188III	TCNNGA	4 cut(s)	263, 452, 555, 1005
Hpy8I	GTNNAC	4 cut(s)	212, 222, 474, 494
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	3 cut(s)	4, 518, 676
HpyCH4III	ACNGT	5 cut(s)	346, 491, 571, 910, 1012
HpyCH4IV	ACGT	2 cut(s)	105, 923
HpyCH4V	TGCA	2 cut(s)	146, 410
HpyF10VI	GCNNNNNNNGC	4 cut(s)	196, 582, 692, 997
HpyF3I	CTNAG	5 cut(s)	149, 604, 688, 822, 1032
HpySE526I	ACGT	2 cut(s)	105, 923
Hsp92II	CATG	6 cut(s)	53, 65, 189, 210, 545, 736
HspAI	GCGC	1 cut(s)	800
Ksp22I	TGATCA	2 cut(s)	534, 591
Kzo9I	GATC	4 cut(s)	386, 534, 591, 808
LguI	GCTCTTC	1 cut(s)	429
LmnI	GCTCC	2 cut(s)	876, 956
Lsp1109I	GCAGC	3 cut(s)	223, 972, 975
LweI	GCATC	2 cut(s)	133, 730
MaeII	ACGT	2 cut(s)	105, 923
MaeIII	GTNAC	2 cut(s)	352, 1024
MalI	GATC	4 cut(s)	388, 536, 593, 810
MboI	GATC	4 cut(s)	386, 534, 591, 808
MboII	GAAGA	4 cut(s)	104, 268, 416, 854
MfeI	CAATTG	1 cut(s)	900
MhlI	GDGCHC	2 cut(s)	22, 424
MluCI	AATT	3 cut(s)	439, 900, 1092
MlyI	GAGTC	4 cut(s)	147, 227, 610, 1049
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	6 cut(s)	94, 139, 214, 259, 666, 962
MseI	TTAA	4 cut(s)	333, 716, 747, 848
MslI	CAYNNNNRTG	2 cut(s)	773, 824
MspR9I	CCNGG	2 cut(s)	24, 383
MunI	CAATTG	1 cut(s)	900
Mva1269I	GAATGC	1 cut(s)	398
MvaI	CCWGG	2 cut(s)	24, 383
MwoI	GCNNNNNNNGC	4 cut(s)	196, 582, 692, 997
NcoI	CCATGG	1 cut(s)	541
NdeII	GATC	4 cut(s)	386, 534, 591, 808
NlaIII	CATG	6 cut(s)	53, 65, 189, 210, 545, 736
NmuCI	GTSAC	1 cut(s)	352
NspI	RCATGY	1 cut(s)	53
PceI	AGGCCT	2 cut(s)	381, 686
PciSI	GCTCTTC	1 cut(s)	429
PctI	GAATGC	1 cut(s)	398
PfeI	GAWTC	5 cut(s)	259, 558, 758, 859, 1050
PflMI	CCANNNNNTGG	1 cut(s)	880
PkrI	GCNGC	5 cut(s)	238, 397, 987, 990, 1069
PleI	GAGTC	4 cut(s)	147, 226, 610, 1048
PpsI	GAGTC	4 cut(s)	147, 226, 610, 1048
Psp1406I	AACGTT	1 cut(s)	923
Psp6I	CCWGG	2 cut(s)	22, 381
PspFI	CCCAGC	1 cut(s)	959
PspGI	CCWGG	2 cut(s)	22, 381
PspPI	GGNCC	1 cut(s)	474
PstNI	CAGNNNCTG	1 cut(s)	1010
RseI	CAYNNNNRTG	2 cut(s)	773, 824
SalI	GTCGAC	1 cut(s)	220
SapI	GCTCTTC	1 cut(s)	429
SaqAI	TTAA	4 cut(s)	333, 716, 747, 848
SatI	GCNGC	5 cut(s)	237, 396, 986, 989, 1068
Sau3AI	GATC	4 cut(s)	386, 534, 591, 808
Sau96I	GGNCC	1 cut(s)	474
SchI	GAGTC	4 cut(s)	147, 227, 610, 1049
ScrFI	CCNGG	2 cut(s)	24, 383
SduI	GDGCHC	2 cut(s)	22, 424
SfaNI	GCATC	2 cut(s)	133, 730
SinI	GGWCC	1 cut(s)	474
SmiMI	CAYNNNNRTG	2 cut(s)	773, 824
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	3 cut(s)	439, 900, 1092
SseBI	AGGCCT	2 cut(s)	381, 686
SsiI	CCGC	5 cut(s)	74, 393, 396, 1068, 1104
StuI	AGGCCT	2 cut(s)	381, 686
StyD4I	CCNGG	2 cut(s)	22, 381
StyI	CCWWGG	2 cut(s)	325, 541
TaaI	ACNGT	5 cut(s)	346, 491, 571, 910, 1012
TaiI	ACGT	2 cut(s)	108, 926
TaqI	TCGA	3 cut(s)	221, 561, 629
TasI	AATT	3 cut(s)	439, 900, 1092
TauI	GCSGC	2 cut(s)	398, 1070
TfiI	GAWTC	5 cut(s)	259, 558, 758, 859, 1050
Tru1I	TTAA	4 cut(s)	333, 716, 747, 848
Tru9I	TTAA	4 cut(s)	333, 716, 747, 848
TscAI	CASTG	4 cut(s)	219, 496, 759, 826
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	3 cut(s)	236, 985, 988
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	7 cut(s)	50, 174, 264, 306, 872, 1007, 1098
TspGWI	ACGGA	3 cut(s)	357, 785, 1098
TspRI	CASTG	4 cut(s)	219, 496, 759, 826
Van91I	CCANNNNNTGG	1 cut(s)	880
VpaK11BI	GGWCC	1 cut(s)	474
XapI	RAATTY	2 cut(s)	439, 1092
XceI	RCATGY	1 cut(s)	53
XcmI	CCANNNNNNNNNTGG	1 cut(s)	823
XmiI	GTMKAC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.