Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004691

Physical Location & Seq

Genomic Coordinates Reverse (-)

26965722 .. 26968980

Gene Structure 3259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002192

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGAAGTAAAAGCCAGAGCACCTGGAAGGATCATACTGTTTGGTGAACATGCTGTGTTTCATGGATCTACTGCCGTCACTGCCTCCATTGACCTGTGTGCCTATGCCACTCTTTGCTTTCCCGCTCATTCTGATAATAATGGTTTACTTAGACTGGAGCTCAAGGATATTGGATTAGAGTTTCTGTGGCCAGTTGGTAGGATTAAGGAAGCGCTATCCAGAATAGATGTTCCCAACCCATCAACACCTCCCTCGTGTCCAGCGGAGGTGAACAAATCACTTGCTATTTTAGTTGAAGAACTAAACATTCCAGAGGCAAAGATCGGAATAGCTGCTGGACCTGCAACAGTTATTATCAGTTCGGAACTTCCTTTGGGTTCAGGTCTTGGTTCATCTGCCGCACTTTGTGTTGCATTCTCTGGTGCTCTTCTTGCTTACTCAGATTGTGCGAGTCTGGATTTCAGCCACCAAGGGTGGTTAGATTTTGGCGGAAGCGAACTTGACTTGCTGAATAAATGGGCATTTGAAGGTGAAAAAATCATCCGCGAAAAGATGTTATCATCTGTTGAGATATTTAGCTTCCTTATCTGTCTGAACTTTGTTCATGAAACGGGGAATATGATCAAGTTTAGATCAGGCAGTTTGACACGCCTCAAATCGAACATGCCACTCAAAATGAGCAACACAAAAGTTGGGAGGAACACAAAGGCCTTAATTCCAGATGCTATGGCTTCTGTGTTTAATGCAGTTGATTCTATCAGCGCGGAATTGGCTACCATTATCCAATCAGAGGCCCCTGATGAAATCTCTGTAACTGAGAAGGAGGCGAAAATAGAAGAGCTCATGGAAATGAACCAAGGTTTGCTCCAATGCACGGGGGTCAGCCATGCTTCAATCATTCTTCGAACTACACTCAAATACAAGTTGGCTTCCAAGTTGACAGGAGCTGGTGGTGGAGGTTGTGTTCTCACACTATTGCCAACCTTGCTATCAGCAACAGTTGTTGATAAAGTAACTGCAGAACTGGAGTTGTGTGGATTCCATTGCTTAACAGCGGCCATTGGTGGACGAGGTGTTCAAGTTTGCTTTGGTGGTGGTTCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0003674 GO:0003824 GO:0004496 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006084 GO:0006139 GO:0006163 GO:0006629 GO:0006637 GO:0006644 GO:0006720 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009117 GO:0009150 GO:0009240 GO:0009259 GO:0009987 GO:0016125 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019287 GO:0019637 GO:0019693 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046490 GO:0046872 GO:0051186 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04146 map00900 map01100 map01110 map01130 map04146

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

369

Amino Acids

38.91

Weight (kDa)

5.47

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	108 - 147	3.8e-07	GHMP kinases N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27450 AT5G27450 AT5G27450
fragaria_vesca	FvH4_6g05650 FvH4_6g05650
malus_domestica	MD04G1206900.v1.1 MD12G1220700.v1.1
prunus_persica	Prupe.6G327600_v2.0.a1
pyrus_communis	pycom04g18290 pycom12g20650
rosa_chinensis	RchiOBHm_Chr3g0454501 RchiOBHm_Chr7g0220931
rosa_laevigata	RLG00000002188 RLG00000002192 RLG00000025439
rosa_multiflora	Rmu_sc0002105.1_g000027 Rmu_sc0007209.1_g000003 Rmu_sc0026738.1_g000003
rosa_roxburghii	Rroxscaffold_6G00425020 Rroxscaffold_6G00425040
rosa_rugosa	Rorug03G0000100 Rorug07G0198300
rosa_samantha	Rh3AG059300 Rh3BG061400 Rh3CG060200 Rh3DG061100 Rh7DG337500
rosa_wichuraiana	Rw0G017160 Rw0G017190 Rw3G004600 Rw7G028810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	349
AccBSI	CCGCTC	1 cut(s)	125
AccII	CGCG	2 cut(s)	546, 764
AciI	CCGC	7 cut(s)	123, 263, 399, 489, 544, 764, 1055
AclWI	GGATC	2 cut(s)	38, 73
AcoI	YGGCCR	2 cut(s)	188, 1056
AdeI	CACNNNGTG	1 cut(s)	407
AfeI	AGCGCT	1 cut(s)	213
AfiI	CCNNNNNNNGG	2 cut(s)	790, 874
AgsI	TTSAA	4 cut(s)	296, 527, 894, 1079
AjnI	CCWGG	1 cut(s)	22
AloI	GAACNNNNNNTCC	4 cut(s)	948, 980, 1059, 1091
AluBI	AGCT	5 cut(s)	160, 332, 579, 841, 947
AluI	AGCT	5 cut(s)	160, 332, 579, 841, 947
Alw21I	GWGCWC	4 cut(s)	22, 162, 427, 843
AlwI	GGATC	2 cut(s)	38, 73
AlwNI	CAGNNNCTG	1 cut(s)	947
Aor51HI	AGCGCT	1 cut(s)	213
AoxI	GGCC	4 cut(s)	188, 708, 792, 1056
ApeKI	GCWGC	1 cut(s)	332
AspLEI	GCGC	2 cut(s)	214, 764
AspS9I	GGNCC	2 cut(s)	338, 793
AsuHPI	GGTGA	3 cut(s)	56, 280, 542
AsuII	TTCGAA	1 cut(s)	904
AvaII	GGWCC	1 cut(s)	338
BalI	TGGCCA	1 cut(s)	190
BanII	GRGCYC	2 cut(s)	162, 843
BauI	CACGAG	1 cut(s)	253
Bbv12I	GWGCWC	4 cut(s)	22, 162, 427, 843
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	24
BclI	TGATCA	1 cut(s)	621
BfmI	CTRYAG	1 cut(s)	1017
BfoI	RGCGCY	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	349
BisI	GCNGC	3 cut(s)	333, 399, 1056
BlsI	GCNGC	3 cut(s)	334, 400, 1057
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	338, 793
BmiI	GGNNCC	1 cut(s)	795
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	712
BpmI	CTGGAG	2 cut(s)	176, 1046
Bpu14I	TTCGAA	1 cut(s)	904
BpuEI	CTTGAG	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	469, 856
BsaXI	ACNNNNNCTCC	2 cut(s)	948, 978
Bsc4I	CCNNNNNNNGG	2 cut(s)	790, 874
Bse1I	ACTGG	3 cut(s)	159, 191, 1029
Bse3DI	GCAATG	1 cut(s)	1042
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	469, 856
BseGI	GGATG	2 cut(s)	540, 1100
BseLI	CCNNNNNNNGG	2 cut(s)	790, 874
BseMI	GCAATG	1 cut(s)	1042
BseMII	CTCAG	2 cut(s)	453, 807
BseNI	ACTGG	3 cut(s)	159, 191, 1029
BseXI	GCAGC	1 cut(s)	319
Bsh1236I	CGCG	2 cut(s)	546, 764
BshFI	GGCC	4 cut(s)	190, 710, 794, 1058
BsiHKAI	GWGCWC	4 cut(s)	22, 162, 427, 843
BslI	CCNNNNNNNGG	2 cut(s)	790, 874
BsmI	GAATGC	1 cut(s)	413
BsnI	GGCC	4 cut(s)	190, 710, 794, 1058
Bsp119I	TTCGAA	1 cut(s)	904
Bsp1286I	GDGCHC	4 cut(s)	22, 162, 427, 843
Bsp143I	GATC	5 cut(s)	30, 65, 321, 621, 632
BspACI	CCGC	7 cut(s)	123, 263, 399, 489, 544, 764, 1055
BspANI	GGCC	4 cut(s)	190, 710, 794, 1058
BspCNI	CTCAG	2 cut(s)	452, 808
BspFNI	CGCG	2 cut(s)	546, 764
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	1 cut(s)	795
BspMAI	CTGCAG	1 cut(s)	1021
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	2 cut(s)	38, 73
BspQI	GCTCTTC	2 cut(s)	432, 831
BspT104I	TTCGAA	1 cut(s)	904
BsrBI	CCGCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	1042
BsrI	ACTGG	3 cut(s)	159, 191, 1029
BssECI	CCNNGG	2 cut(s)	469, 856
BssMI	GATC	5 cut(s)	30, 65, 321, 621, 632
BssSI	CACGAG	1 cut(s)	253
BssT1I	CCWWGG	2 cut(s)	469, 856
Bst2BI	CACGAG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	3 cut(s)	39, 349, 1000
Bst6I	CTCTTC	2 cut(s)	432, 831
BstBI	TTCGAA	1 cut(s)	904
BstDEI	CTNAG	3 cut(s)	149, 439, 816
BstF5I	GGATG	2 cut(s)	540, 1100
BstFNI	CGCG	2 cut(s)	546, 764
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	2 cut(s)	214, 764
BstKTI	GATC	5 cut(s)	33, 68, 324, 624, 635
BstMBI	GATC	5 cut(s)	30, 65, 321, 621, 632
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 341, 431, 770, 985
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	2 cut(s)	53, 667
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	1017
BstUI	CGCG	2 cut(s)	546, 764
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BsuRI	GGCC	4 cut(s)	190, 710, 794, 1058
BtsCI	GGATG	2 cut(s)	540, 1100
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	78
BveI	ACCTGC	1 cut(s)	349
CaiI	CAGNNNCTG	1 cut(s)	947
CciI	TCATGA	1 cut(s)	604
CfoI	GCGC	2 cut(s)	214, 764
Cfr13I	GGNCC	2 cut(s)	338, 793
CviAII	CATG	6 cut(s)	50, 62, 605, 664, 844, 887
DdeI	CTNAG	3 cut(s)	149, 439, 816
DpnI	GATC	5 cut(s)	32, 67, 323, 623, 634
DpnII	GATC	5 cut(s)	30, 65, 321, 621, 632
DraIII	CACNNNGTG	1 cut(s)	407
EaeI	YGGCCR	2 cut(s)	188, 1056
Eam1104I	CTCTTC	2 cut(s)	432, 831
EarI	CTCTTC	2 cut(s)	432, 831
EciI	GGCGGA	1 cut(s)	504
Ecl136II	GAGCTC	2 cut(s)	160, 841
Eco130I	CCWWGG	2 cut(s)	469, 856
Eco147I	AGGCCT	1 cut(s)	710
Eco24I	GRGCYC	2 cut(s)	162, 843
Eco47I	GGWCC	1 cut(s)	338
Eco47III	AGCGCT	1 cut(s)	213
Eco53kI	GAGCTC	2 cut(s)	160, 841
EcoICRI	GAGCTC	2 cut(s)	160, 841
EcoO109I	RGGNCCY	1 cut(s)	793
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	469, 856
EcoT38I	GRGCYC	2 cut(s)	162, 843
ErhI	CCWWGG	2 cut(s)	469, 856
FaeI	CATG	6 cut(s)	53, 65, 608, 667, 847, 890
FatI	CATG	6 cut(s)	49, 61, 604, 663, 843, 886
FauI	CCCGC	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	621
Fnu4HI	GCNGC	3 cut(s)	333, 399, 1056
FokI	GGATG	2 cut(s)	527, 1087
FriOI	GRGCYC	2 cut(s)	162, 843
Fsp4HI	GCNGC	3 cut(s)	333, 399, 1056
GlaI	GCGC	2 cut(s)	213, 763
GluI	GCNGC	3 cut(s)	333, 399, 1056
GsuI	CTGGAG	2 cut(s)	176, 1046
HaeII	RGCGCY	1 cut(s)	215
HaeIII	GGCC	4 cut(s)	190, 710, 794, 1058
HhaI	GCGC	2 cut(s)	214, 764
Hin1II	CATG	6 cut(s)	53, 65, 608, 667, 847, 890
Hin6I	GCGC	2 cut(s)	212, 762
HinP1I	GCGC	2 cut(s)	212, 762
HincII	GTYRAC	1 cut(s)	939
HindII	GTYRAC	1 cut(s)	939
HinfI	GANTC	3 cut(s)	451, 752, 1038
HphI	GGTGA	3 cut(s)	56, 280, 542
Hpy166II	GTNNAC	5 cut(s)	47, 146, 271, 939, 1067
Hpy188I	TCNGA	6 cut(s)	133, 326, 364, 442, 594, 790
Hpy188III	TCNNGA	6 cut(s)	219, 311, 455, 605, 719, 1104
Hpy8I	GTNNAC	5 cut(s)	47, 146, 271, 939, 1067
HpyAV	CCTTC	3 cut(s)	21, 521, 814
HpyCH4III	ACNGT	3 cut(s)	39, 349, 1000
HpyCH4V	TGCA	5 cut(s)	344, 413, 746, 873, 1019
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 341, 431, 770, 985
HpyF3I	CTNAG	3 cut(s)	149, 439, 816
Hsp92II	CATG	6 cut(s)	53, 65, 608, 667, 847, 890
HspAI	GCGC	2 cut(s)	212, 762
Ksp22I	TGATCA	1 cut(s)	621
Kzo9I	GATC	5 cut(s)	30, 65, 321, 621, 632
LguI	GCTCTTC	2 cut(s)	432, 831
LmnI	GCTCC	3 cut(s)	157, 870, 944
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	712
MaeIII	GTNAC	3 cut(s)	76, 811, 1012
MalI	GATC	5 cut(s)	32, 67, 323, 623, 634
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	5 cut(s)	30, 65, 321, 621, 632
MboII	GAAGA	4 cut(s)	308, 419, 848, 893
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	4 cut(s)	22, 162, 427, 843
MlsI	TGGCCA	1 cut(s)	190
MluCI	AATT	2 cut(s)	714, 767
MluNI	TGGCCA	1 cut(s)	190
MlyI	GAGTC	1 cut(s)	460
Mox20I	TGGCCA	1 cut(s)	190
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	4 cut(s)	204, 713, 741, 1049
MslI	CAYNNNNRTG	1 cut(s)	848
Msp20I	TGGCCA	1 cut(s)	190
MspA1I	CMGCKG	2 cut(s)	263, 1055
MspR9I	CCNGG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	24
MvnI	CGCG	2 cut(s)	546, 764
MwoI	GCNNNNNNNGC	5 cut(s)	80, 341, 431, 770, 985
NdeII	GATC	5 cut(s)	30, 65, 321, 621, 632
NlaIII	CATG	6 cut(s)	53, 65, 608, 667, 847, 890
NlaIV	GGNNCC	1 cut(s)	795
NmuCI	GTSAC	1 cut(s)	76
NspI	RCATGY	2 cut(s)	53, 667
NspV	TTCGAA	1 cut(s)	904
PagI	TCATGA	1 cut(s)	604
PceI	AGGCCT	1 cut(s)	710
PciSI	GCTCTTC	2 cut(s)	432, 831
PctI	GAATGC	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	752, 1038
PkrI	GCNGC	3 cut(s)	334, 400, 1057
PleI	GAGTC	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	459
Psp124BI	GAGCTC	2 cut(s)	162, 843
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	795
PspPI	GGNCC	2 cut(s)	338, 793
PstI	CTGCAG	1 cut(s)	1021
PstNI	CAGNNNCTG	1 cut(s)	947
PsuI	RGATCY	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	848
SacI	GAGCTC	2 cut(s)	162, 843
SapI	GCTCTTC	2 cut(s)	432, 831
SaqAI	TTAA	4 cut(s)	204, 713, 741, 1049
SatI	GCNGC	3 cut(s)	333, 399, 1056
Sau3AI	GATC	5 cut(s)	30, 65, 321, 621, 632
Sau96I	GGNCC	2 cut(s)	338, 793
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	4 cut(s)	22, 162, 427, 843
SfaNI	GCATC	1 cut(s)	712
SfcI	CTRYAG	1 cut(s)	1017
SfuI	TTCGAA	1 cut(s)	904
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	848
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	2 cut(s)	714, 767
SseBI	AGGCCT	1 cut(s)	710
SsiI	CCGC	7 cut(s)	123, 263, 399, 489, 544, 764, 1055
SstI	GAGCTC	2 cut(s)	162, 843
StuI	AGGCCT	1 cut(s)	710
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	2 cut(s)	469, 856
TaaI	ACNGT	3 cut(s)	39, 349, 1000
TaqI	TCGA	2 cut(s)	659, 904
TasI	AATT	2 cut(s)	714, 767
TauI	GCSGC	2 cut(s)	401, 1058
TfiI	GAWTC	2 cut(s)	752, 1038
Tru1I	TTAA	4 cut(s)	204, 713, 741, 1049
Tru9I	TTAA	4 cut(s)	204, 713, 741, 1049
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	7 cut(s)	50, 381, 593, 621, 816, 866, 1089
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	338
XceI	RCATGY	2 cut(s)	53, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.