Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001967

Physical Location & Seq

Genomic Coordinates Reverse (-)

14969596 .. 14971343

Gene Structure 1748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G37680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGTCTTTGGGATTCACTTCTTAATTGGCTCCGGAGCTTGTTTTTCAAACAAGAGATGGAGCTGTCACTCGTTGGACTTCAAAATGCTGGGAAGACTTCTCTTGTCAATGCCATTGCTACTGGAGGTTACAGTGAAGATATGATACCAACTGTAGGATTTAACATGAGGAAAGTTACAAAAGGAAATGTTACAATAAAGATTTGGGATCTTGGAGGGCAACGAAGGTTTCGTACCATGTGGGAACGTTACTGTCGCGGTGTTTCCGCCATTGTATATGTGATTGATGCTGCAGATCGAGATAGTGTACCGATATCAAGAAGCGAATTGAATGATCTGCTAACGAAACCGTCTTTAAATGGCATTCCTCTTCTGATTCTTGGCAACAAAATCGATAAGTCTGAAGCTCTCTCTAAGCAAGCTTTGGTTGATCAACTAGGGCTTGAATCTGTAACAGACAGAGAGGTTTGCTGTTACATGATCTCGTGTAAGGACTCGATAAACATTGATGCGGTCATCGATTGGCTCATTAAGCACTCGAGAACTGCCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0097159 GO:0097367 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

184

Amino Acids

20.57

Weight (kDa)

7.62

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	1 - 131	1.6e-36	ADP-ribosylation factor family
G-alpha	PF00503	2 - 66	1.6e-06	G-protein alpha subunit
Gtr1_RagA	PF04670	4 - 96	5.9e-06	Gtr1/RagA G protein conserved region
Ras	PF00071	11 - 132	1.1e-12	Ras family
Roc	PF08477	14 - 85	3.2e-09	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37680 AT5G37680
fragaria_vesca	FvH4_1g30280 FvH4_1g30280 FvH4_1g30280 FvH4_2g03780
malus_domestica	MD05G1101000.v1.1 MD09G1271300.v1.1 MD17G1269600.v1.1
prunus_persica	Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.8G145900_v2.0.a1 Prupe.8G145900_v2.0.a1
pyrus_communis	pycom05g09970 pycom09g18230 pycom15g26060 pycom17g26810
rosa_chinensis	RchiOBHm_Chr3g0491081 RchiOBHm_Chr6g0252801
rosa_laevigata	RLG00000017639
rosa_multiflora	Rmu_sc0000829.1_g000043 Rmu_sc0005038.1_g000013 Rmu_ssc0000386.1_g000060
rosa_roxburghii	Rroxscaffold_6G00393230 Rroxscaffold_7G00212420
rosa_rugosa	Rorug03G0245700 Rorug03G0245700 Rorug03G0245800 Rorug03G0245900 Rorug05G0538800 Rorug05G0538800
rosa_samantha	Rh3AG296100 Rh3BG332100 Rh3CG329200 Rh3DG329800 Rh6AG054800 Rh6BG048800 Rh6CG047700 Rh6DG043200
rosa_wichuraiana	Rw3G026130 Rw6G004950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	258
AccIII	TCCGGA	1 cut(s)	33
AciI	CCGC	3 cut(s)	258, 267, 512
AclI	AACGTT	1 cut(s)	247
AclWI	GGATC	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	423
AfaI	GTAC	2 cut(s)	235, 309
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	4 cut(s)	49, 83, 331, 446
AluBI	AGCT	4 cut(s)	39, 64, 407, 422
AluI	AGCT	4 cut(s)	39, 64, 407, 422
AlwI	GGATC	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	538
Aor13HI	TCCGGA	1 cut(s)	33
ApeKI	GCWGC	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	538
BarI	GAAGNNNNNNTAC	4 cut(s)	129, 161, 217, 249
BauI	CACGAG	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	52
BcgI	CGANNNNNNTGC	2 cut(s)	373, 407
BclI	TGATCA	1 cut(s)	430
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	2 cut(s)	153, 291
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	538
BmiI	GGNNCC	1 cut(s)	32
BmsI	GCATC	2 cut(s)	277, 499
BpiI	GAAGAC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	144
Bsa29I	ATCGAT	2 cut(s)	393, 519
BsaWI	WCCGGW	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	33
BseCI	ATCGAT	2 cut(s)	393, 519
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	277
BseYI	CCCAGC	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	258
BshVI	ATCGAT	2 cut(s)	393, 519
BsiHKCI	CYCGRG	1 cut(s)	538
BsiSI	CCGG	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	363
BsoBI	CYCGRG	1 cut(s)	538
Bsp13I	TCCGGA	1 cut(s)	33
Bsp143I	GATC	5 cut(s)	208, 295, 334, 430, 480
BspACI	CCGC	3 cut(s)	258, 267, 512
BspDI	ATCGAT	2 cut(s)	393, 519
BspEI	TCCGGA	1 cut(s)	33
BspFNI	CGCG	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	32
BspMAI	CTGCAG	1 cut(s)	295
BspPI	GGATC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	127
BssMI	GATC	5 cut(s)	208, 295, 334, 430, 480
BssSI	CACGAG	1 cut(s)	484
Bst2BI	CACGAG	1 cut(s)	484
Bst4CI	ACNGT	4 cut(s)	134, 154, 254, 351
Bst6I	CTCTTC	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	1 cut(s)	414
BstFNI	CGCG	1 cut(s)	258
BstKTI	GATC	5 cut(s)	211, 298, 337, 433, 483
BstMBI	GATC	5 cut(s)	208, 295, 334, 430, 480
BstMWI	GCNNNNNNNGC	1 cut(s)	532
BstSFI	CTRYAG	2 cut(s)	153, 291
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
Bsu15I	ATCGAT	2 cut(s)	393, 519
BsuTUI	ATCGAT	2 cut(s)	393, 519
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	420
ClaI	ATCGAT	2 cut(s)	393, 519
Csp6I	GTAC	2 cut(s)	234, 308
CviAII	CATG	3 cut(s)	166, 238, 478
CviJI	RGCY	7 cut(s)	31, 39, 64, 407, 422, 442, 526
CviKI_1	RGCY	7 cut(s)	31, 39, 64, 407, 422, 442, 526
CviQI	GTAC	2 cut(s)	234, 308
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	5 cut(s)	210, 297, 336, 432, 482
DpnII	GATC	5 cut(s)	208, 295, 334, 430, 480
DraI	TTTAAA	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
EciI	GGCGGA	1 cut(s)	256
Eco32I	GATATC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	538
EcoRV	GATATC	1 cut(s)	315
FaeI	CATG	3 cut(s)	169, 241, 481
FaiI	YATR	7 cut(s)	143, 167, 239, 277, 279, 479, 553
FatI	CATG	3 cut(s)	165, 237, 477
FbaI	TGATCA	1 cut(s)	430
Fnu4HI	GCNGC	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	1 cut(s)	291
GsaI	CCCAGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	144
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	3 cut(s)	169, 241, 481
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	4 cut(s)	14, 376, 446, 494
HpaII	CCGG	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	2 cut(s)	375, 403
Hpy188III	TCNNGA	4 cut(s)	34, 299, 318, 540
Hpy8I	GTNNAC	1 cut(s)	308
HpyAV	CCTTC	1 cut(s)	219
HpyCH4III	ACNGT	4 cut(s)	134, 154, 254, 351
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	532
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	3 cut(s)	169, 241, 481
Kpn2I	TCCGGA	1 cut(s)	33
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	5 cut(s)	208, 295, 334, 430, 480
LmnI	GCTCC	3 cut(s)	36, 36, 61
LpnPI	CCDG	3 cut(s)	47, 75, 108
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	2 cut(s)	277, 499
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	7 cut(s)	66, 128, 175, 190, 248, 451, 473
MalI	GATC	5 cut(s)	210, 297, 336, 432, 482
MboI	GATC	5 cut(s)	208, 295, 334, 430, 480
MboII	GAAGA	3 cut(s)	106, 149, 362
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	2 cut(s)	25, 326
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	5 cut(s)	119, 162, 209, 378, 457
MroI	TCCGGA	1 cut(s)	33
MseI	TTAA	4 cut(s)	24, 162, 356, 531
MspI	CCGG	1 cut(s)	34
Mva1269I	GAATGC	1 cut(s)	363
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	532
NdeII	GATC	5 cut(s)	208, 295, 334, 430, 480
NlaIII	CATG	3 cut(s)	169, 241, 481
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	66
PaeR7I	CTCGAG	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	1 cut(s)	229
PctI	GAATGC	1 cut(s)	363
PfeI	GAWTC	3 cut(s)	14, 376, 446
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
Psp1406I	AACGTT	1 cut(s)	247
PspFI	CCCAGC	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	32
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	2 cut(s)	235, 309
RsaNI	GTAC	2 cut(s)	234, 308
SaqAI	TTAA	4 cut(s)	24, 162, 356, 531
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	5 cut(s)	208, 295, 334, 430, 480
SchI	GAGTC	1 cut(s)	488
SetI	ASST	8 cut(s)	41, 66, 130, 230, 250, 409, 424, 468
SfaNI	GCATC	2 cut(s)	277, 499
SfcI	CTRYAG	2 cut(s)	153, 291
Sfr274I	CTCGAG	1 cut(s)	538
SlaI	CTCGAG	1 cut(s)	538
SmlI	CTYRAG	1 cut(s)	538
SmoI	CTYRAG	1 cut(s)	538
Sse9I	AATT	2 cut(s)	25, 326
SsiI	CCGC	3 cut(s)	258, 267, 512
SspMI	CTAG	1 cut(s)	437
TaaI	ACNGT	4 cut(s)	134, 154, 254, 351
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	5 cut(s)	298, 393, 497, 519, 539
TasI	AATT	2 cut(s)	25, 326
TfiI	GAWTC	3 cut(s)	14, 376, 446
Tru1I	TTAA	4 cut(s)	24, 162, 356, 531
Tru9I	TTAA	4 cut(s)	24, 162, 356, 531
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	66
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	66
TspRI	CASTG	1 cut(s)	139
XhoI	CTCGAG	1 cut(s)	538
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.