Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001967

Physical Location & Seq

Genomic Coordinates Forward (+)

18816468 .. 18821819

Gene Structure 5352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g18230.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGATGGGGGGAACAGCGGTCGGTCATCACAAAAGGGAAGCTAAAAAACAGACAGAGATTGATAAAAAGAAAGGGATCAGCAGTGGGCCCAAGTTTCCTCCTTGTTGGTTTCCTCTGCTGCCCTTTTCCTCCTCTTATCTCACCCAAAACCTCATTTGTTTTCGAAAAATGGGTTTACTGGATTCCTTCCTCAATTGGCTCCGCAGCTTATTTTTTAAACAGGAAATGGAACTTTCACTAGTAGGGCTTCAGAATGCAGGAAAGACATCTCTTTTGAATGCCATTGCTACAGGCGGCTACAGTGAGGACATGATTCCAACTGTTGGATTCAACATGCGAAAAGTAACCAAGGGAAATGTGACAATCAAGGTTTGGGACCTTGGAGGTCAAAGAAGGTTCCGCACAATGTGGGAGCGTTACTGTCGTGGCGTCTCTGTAATTGTCTACGTGGTTGATGCTGCTGACAGAGACAATATTCCAATAGCTCGAAGTGAGCTGCACGACCTCTTAATGAAACCTTCCTTAAATGGGATTCCGTTGCTTGTTCTTGGCAACAAAATCGACAAGTCTGAGGCTCTTTCCAAACAAGCATTGGTTGATCAACTAGGCCTTGATTCAATTACGGATAAAGAAGTGTGCTGCTATATGATCTCATGCAAGGACTCCATAAATATAGATGTTGTCATTGATTGGCTTATCAAACACTCCAAAACAGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0097159 GO:0097367 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

241

Amino Acids

26.92

Weight (kDa)

9.26

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37680 AT5G37680
fragaria_vesca	FvH4_1g30280 FvH4_1g30280 FvH4_1g30280 FvH4_2g03780
malus_domestica	MD05G1101000.v1.1 MD09G1271300.v1.1 MD17G1269600.v1.1
prunus_persica	Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.8G145900_v2.0.a1 Prupe.8G145900_v2.0.a1
pyrus_communis	pycom05g09970 pycom09g18230 pycom15g26060 pycom17g26810
rosa_chinensis	RchiOBHm_Chr3g0491081 RchiOBHm_Chr6g0252801
rosa_laevigata	RLG00000017639
rosa_multiflora	Rmu_sc0000829.1_g000043 Rmu_sc0005038.1_g000013 Rmu_ssc0000386.1_g000060
rosa_roxburghii	Rroxscaffold_6G00393230 Rroxscaffold_7G00212420
rosa_rugosa	Rorug03G0245700 Rorug03G0245700 Rorug03G0245800 Rorug03G0245900 Rorug05G0538800 Rorug05G0538800
rosa_samantha	Rh3AG296100 Rh3BG332100 Rh3CG329200 Rh3DG329800 Rh6AG054800 Rh6BG048800 Rh6CG047700 Rh6DG043200
rosa_wichuraiana	Rw3G026130 Rw6G004950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	323
AccI	GTMKAC	1 cut(s)	444
AciI	CCGC	4 cut(s)	17, 202, 294, 400
AclWI	GGATC	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	429
AdeI	CACNNNGTG	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	323, 528
AgsI	TTSAA	3 cut(s)	277, 331, 618
AhlI	ACTAGT	1 cut(s)	238
AluBI	AGCT	4 cut(s)	41, 207, 485, 496
AluI	AGCT	4 cut(s)	41, 207, 485, 496
Alw26I	GTCTC	2 cut(s)	436, 462
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	2 cut(s)	86, 607
ApaI	GGGCCC	1 cut(s)	90
ApeKI	GCWGC	5 cut(s)	118, 204, 458, 496, 639
ArsI	GACNNNNNNTTYG	2 cut(s)	256, 288
AspS9I	GGNCC	3 cut(s)	86, 87, 376
AsuHPI	GGTGA	1 cut(s)	133
AsuII	TTCGAA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	90
BbvI	GCAGC	5 cut(s)	105, 216, 445, 483, 626
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BclI	TGATCA	1 cut(s)	598
BcoDI	GTCTC	2 cut(s)	436, 462
BcuI	ACTAGT	1 cut(s)	238
BfaI	CTAG	2 cut(s)	239, 605
BfmI	CTRYAG	2 cut(s)	288, 298
BisI	GCNGC	6 cut(s)	119, 205, 295, 459, 497, 640
BlsI	GCNGC	6 cut(s)	120, 206, 296, 460, 498, 641
Bme18I	GGWCC	1 cut(s)	376
BmgT120I	GGNCC	3 cut(s)	86, 87, 376
BmiI	GGNNCC	4 cut(s)	88, 200, 377, 398
BmsI	GCATC	1 cut(s)	445
Bpu14I	TTCGAA	1 cut(s)	163
BsaAI	YACGTR	1 cut(s)	448
BsaHI	GRCGYC	1 cut(s)	429
BsaJI	CCNNGG	2 cut(s)	348, 379
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 528
Bse1I	ACTGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	348, 379
BseLI	CCNNNNNNNGG	2 cut(s)	323, 528
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	561
BseNI	ACTGG	1 cut(s)	183
BseRI	GAGGAG	1 cut(s)	121
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	5 cut(s)	105, 216, 445, 483, 626
BsgI	GTGCAG	1 cut(s)	482
Bsh1285I	CGRYCG	1 cut(s)	21
BshFI	GGCC	2 cut(s)	88, 609
BsiEI	CGRYCG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	323, 528
BsmAI	GTCTC	2 cut(s)	436, 462
BsmBI	CGTCTC	1 cut(s)	436
BsmFI	GGGAC	1 cut(s)	389
BsmI	GAATGC	2 cut(s)	259, 283
BsnI	GGCC	2 cut(s)	88, 609
Bsp119I	TTCGAA	1 cut(s)	163
Bsp120I	GGGCCC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	75, 598, 648
BspACI	CCGC	4 cut(s)	17, 202, 294, 400
BspANI	GGCC	2 cut(s)	88, 609
BspCNI	CTCAG	1 cut(s)	562
BspLI	GGNNCC	4 cut(s)	88, 200, 377, 398
BspPI	GGATC	1 cut(s)	83
BspT104I	TTCGAA	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	2 cut(s)	348, 379
BssMI	GATC	3 cut(s)	75, 598, 648
BssNI	GRCGYC	1 cut(s)	429
BssT1I	CCWWGG	2 cut(s)	348, 379
Bst4CI	ACNGT	3 cut(s)	302, 322, 422
BstACI	GRCGYC	1 cut(s)	429
BstBAI	YACGTR	1 cut(s)	448
BstBI	TTCGAA	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	570
BstKTI	GATC	3 cut(s)	78, 601, 651
BstMAI	GTCTC	2 cut(s)	436, 462
BstMBI	GATC	3 cut(s)	75, 598, 648
BstMCI	CGRYCG	1 cut(s)	21
BstNSI	RCATGY	1 cut(s)	337
BstSFI	CTRYAG	2 cut(s)	288, 298
BstSLI	GKGCMC	1 cut(s)	90
BstV1I	GCAGC	5 cut(s)	105, 216, 445, 483, 626
BsuRI	GGCC	2 cut(s)	88, 609
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	2 cut(s)	88, 307
Cfr13I	GGNCC	3 cut(s)	86, 87, 376
CseI	GACGC	1 cut(s)	418
CviAII	CATG	3 cut(s)	310, 334, 654
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	3 cut(s)	77, 600, 650
DpnII	GATC	3 cut(s)	75, 598, 648
DraI	TTTAAA	1 cut(s)	217
DraIII	CACNNNGTG	1 cut(s)	408
Eco130I	CCWWGG	2 cut(s)	348, 379
Eco147I	AGGCCT	1 cut(s)	609
Eco24I	GRGCYC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	376
Eco57I	CTGAAG	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	376
EcoT14I	CCWWGG	2 cut(s)	348, 379
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	2 cut(s)	348, 379
Esp3I	CGTCTC	1 cut(s)	436
FaeI	CATG	3 cut(s)	313, 337, 657
FaiI	YATR	7 cut(s)	311, 335, 645, 647, 655, 668, 674
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	3 cut(s)	309, 333, 653
FbaI	TGATCA	1 cut(s)	598
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	6 cut(s)	119, 205, 295, 459, 497, 640
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	6 cut(s)	119, 205, 295, 459, 497, 640
FspBI	CTAG	2 cut(s)	239, 605
GluI	GCNGC	6 cut(s)	119, 205, 295, 459, 497, 640
HaeIII	GGCC	2 cut(s)	88, 609
HgaI	GACGC	1 cut(s)	418
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	3 cut(s)	313, 337, 657
HinfI	GANTC	6 cut(s)	182, 313, 327, 532, 614, 662
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	2 cut(s)	176, 445
Hpy188I	TCNGA	2 cut(s)	252, 571
Hpy8I	GTNNAC	2 cut(s)	176, 445
HpyAV	CCTTC	3 cut(s)	196, 387, 528
HpyCH4III	ACNGT	3 cut(s)	302, 322, 422
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	3 cut(s)	257, 499, 657
HpyF3I	CTNAG	1 cut(s)	570
HpySE526I	ACGT	1 cut(s)	447
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	3 cut(s)	313, 337, 657
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	3 cut(s)	75, 598, 648
LmnI	GCTCC	2 cut(s)	204, 412
LpnPI	CCDG	4 cut(s)	164, 206, 243, 276
Lsp1109I	GCAGC	5 cut(s)	105, 216, 445, 483, 626
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	2 cut(s)	239, 605
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	3 cut(s)	343, 358, 416
MalI	GATC	3 cut(s)	77, 600, 650
MboI	GATC	3 cut(s)	75, 598, 648
MfeI	CAATTG	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	3 cut(s)	193, 438, 618
MlyI	GAGTC	1 cut(s)	656
MmeI	TCCRAC	2 cut(s)	304, 341
MseI	TTAA	3 cut(s)	216, 509, 524
MspA1I	CMGCKG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	193
Mva1269I	GAATGC	2 cut(s)	259, 283
NdeII	GATC	3 cut(s)	75, 598, 648
NlaIII	CATG	3 cut(s)	313, 337, 657
NlaIV	GGNNCC	4 cut(s)	88, 200, 377, 398
NmuCI	GTSAC	1 cut(s)	358
NspI	RCATGY	1 cut(s)	337
NspV	TTCGAA	1 cut(s)	163
PceI	AGGCCT	1 cut(s)	609
PctI	GAATGC	2 cut(s)	259, 283
PfeI	GAWTC	5 cut(s)	182, 313, 327, 532, 614
PflMI	CCANNNNNTGG	1 cut(s)	323
PkrI	GCNGC	6 cut(s)	120, 206, 296, 460, 498, 641
PleI	GAGTC	1 cut(s)	656
PpsI	GAGTC	1 cut(s)	656
Ppu21I	YACGTR	1 cut(s)	448
PpuMI	RGGWCCY	1 cut(s)	376
Psp5II	RGGWCCY	1 cut(s)	376
PspN4I	GGNNCC	4 cut(s)	88, 200, 377, 398
PspOMI	GGGCCC	1 cut(s)	86
PspPI	GGNCC	3 cut(s)	86, 87, 376
PspPPI	RGGWCCY	1 cut(s)	376
SaqAI	TTAA	3 cut(s)	216, 509, 524
SatI	GCNGC	6 cut(s)	119, 205, 295, 459, 497, 640
Sau3AI	GATC	3 cut(s)	75, 598, 648
Sau96I	GGNCC	3 cut(s)	86, 87, 376
SchI	GAGTC	1 cut(s)	656
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	2 cut(s)	288, 298
SfuI	TTCGAA	1 cut(s)	163
SinI	GGWCC	1 cut(s)	376
SpeI	ACTAGT	1 cut(s)	238
Sse9I	AATT	3 cut(s)	193, 438, 618
SseBI	AGGCCT	1 cut(s)	609
SsiI	CCGC	4 cut(s)	17, 202, 294, 400
SspI	AATATT	1 cut(s)	475
SspMI	CTAG	2 cut(s)	239, 605
StuI	AGGCCT	1 cut(s)	609
StyI	CCWWGG	2 cut(s)	348, 379
TaaI	ACNGT	3 cut(s)	302, 322, 422
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	3 cut(s)	163, 487, 561
TaqII	GACCGA	1 cut(s)	11
TasI	AATT	3 cut(s)	193, 438, 618
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	5 cut(s)	182, 313, 327, 532, 614
Tru1I	TTAA	3 cut(s)	216, 509, 524
Tru9I	TTAA	3 cut(s)	216, 509, 524
TscAI	CASTG	2 cut(s)	88, 307
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	5 cut(s)	118, 204, 458, 496, 639
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	1 cut(s)	527
TspGWI	ACGGA	2 cut(s)	525, 638
TspRI	CASTG	2 cut(s)	88, 307
Van91I	CCANNNNNTGG	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	376
XceI	RCATGY	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XmiI	GTMKAC	1 cut(s)	444
XspI	CTAG	2 cut(s)	239, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.