Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001967

Physical Location & Seq

Genomic Coordinates Forward (+)

23029381 .. 23029785

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0245900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCCACGCTGACGTTTGCGTTGTGTTGCCAGAAGGGTATTTGCTGCTATTGCTCGGGTTTTTTGCTGGGAGGTGTGTGGTTTGCGTTAGGGGCAAGATGGTGTCGGGGAGCAGGTTTCCAGTGGGCTATCTTTGAAGCGCCATGGTCGTGGTGTATGGCGGCAGTTCGTGGCGGTGCTGATTTGTCGCGGTGGAGATTTCGTGGTAAGATGGTTAGTGCCGGCATGGTTCGTGCGGCACTGGACCGTGGAGGCGCGGGATTGAGGCAGTGCAGATCGGGGTGGGGCGGACTGTGGCGGCGCCGAGACGGGTCGGCTTGGATGGCGCAAGTCGTGGAGCACCATGGTCGGAGCGGCGCAGGTCGTGCCGGAGTGGGAAGGGACGAGCTCAGCCTGTGCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0097159 GO:0097367 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

134

Amino Acids

14.57

Weight (kDa)

10.04

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37680 AT5G37680
fragaria_vesca	FvH4_1g30280 FvH4_1g30280 FvH4_1g30280 FvH4_2g03780
malus_domestica	MD05G1101000.v1.1 MD09G1271300.v1.1 MD17G1269600.v1.1
prunus_persica	Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.8G145900_v2.0.a1 Prupe.8G145900_v2.0.a1
pyrus_communis	pycom05g09970 pycom09g18230 pycom15g26060 pycom17g26810
rosa_chinensis	RchiOBHm_Chr3g0491081 RchiOBHm_Chr6g0252801
rosa_laevigata	RLG00000017639
rosa_multiflora	Rmu_sc0000829.1_g000043 Rmu_sc0005038.1_g000013 Rmu_ssc0000386.1_g000060
rosa_roxburghii	Rroxscaffold_6G00393230 Rroxscaffold_7G00212420
rosa_rugosa	Rorug03G0245700 Rorug03G0245700 Rorug03G0245800 Rorug03G0245900 Rorug05G0538800 Rorug05G0538800
rosa_samantha	Rh3AG296100 Rh3BG332100 Rh3CG329200 Rh3DG329800 Rh6AG054800 Rh6BG048800 Rh6CG047700 Rh6DG043200
rosa_wichuraiana	Rw3G026130 Rw6G004950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	104, 350
AccB1I	GGYRCC	1 cut(s)	300
AccBSI	CCGCTC	1 cut(s)	354
AccII	CGCG	2 cut(s)	190, 257
AciI	CCGC	8 cut(s)	161, 174, 190, 236, 257, 288, 298, 354
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	301
AgsI	TTSAA	1 cut(s)	137
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw21I	GWGCWC	2 cut(s)	342, 390
Alw26I	GTCTC	1 cut(s)	300
Ama87I	CYCGRG	1 cut(s)	55
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	45
AspLEI	GCGC	5 cut(s)	142, 257, 303, 328, 359
AspS9I	GGNCC	1 cut(s)	244
AvaI	CYCGRG	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	390
Bbv12I	GWGCWC	2 cut(s)	342, 390
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	3 cut(s)	93, 205, 316
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BcoDI	GTCTC	1 cut(s)	300
BfoI	RGCGCY	2 cut(s)	143, 304
BfuAI	ACCTGC	2 cut(s)	104, 350
BisI	GCNGC	5 cut(s)	46, 162, 237, 299, 355
BlpI	GCTNAGC	1 cut(s)	389
BlsI	GCNGC	5 cut(s)	47, 163, 238, 300, 356
Bme18I	GGWCC	1 cut(s)	244
BmeT110I	CYCGRG	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	302
Bpu1102I	GCTNAGC	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	301
BsaJI	CCNNGG	3 cut(s)	143, 247, 343
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	121, 246
BseDI	CCNNGG	3 cut(s)	143, 247, 343
BseGI	GGATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	403
BseNI	ACTGG	2 cut(s)	121, 246
BseXI	GCAGC	1 cut(s)	32
BseYI	CCCAGC	1 cut(s)	67
BsgI	GTGCAG	1 cut(s)	292
Bsh1236I	CGCG	2 cut(s)	190, 257
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	300
BsiHKAI	GWGCWC	2 cut(s)	342, 390
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	222, 369
BslFI	GGGAC	1 cut(s)	395
BsmAI	GTCTC	1 cut(s)	300
BsmBI	CGTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	342, 390
Bsp143I	GATC	1 cut(s)	275
Bsp1720I	GCTNAGC	1 cut(s)	389
Bsp19I	CCATGG	2 cut(s)	143, 343
BspACI	CCGC	8 cut(s)	161, 174, 190, 236, 257, 288, 298, 354
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	402
BspFNI	CGCG	2 cut(s)	190, 257
BspLI	GGNNCC	1 cut(s)	302
BspMI	ACCTGC	2 cut(s)	104, 350
BspT107I	GGYRCC	1 cut(s)	300
BsrBI	CCGCTC	1 cut(s)	354
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	121, 246
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	3 cut(s)	143, 247, 343
BssMI	GATC	1 cut(s)	275
BssNI	GRCGYC	1 cut(s)	301
BssT1I	CCWWGG	2 cut(s)	143, 343
Bst4CI	ACNGT	2 cut(s)	248, 294
BstACI	GRCGYC	1 cut(s)	301
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	389
BstDSI	CCRYGG	3 cut(s)	143, 247, 343
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	2 cut(s)	190, 257
BstH2I	RGCGCY	2 cut(s)	143, 304
BstHHI	GCGC	5 cut(s)	142, 257, 303, 328, 359
BstKTI	GATC	1 cut(s)	278
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 92, 323, 365
BstUI	CGCG	2 cut(s)	190, 257
BstV1I	GCAGC	1 cut(s)	32
BstXI	CCANNNNNNTGG	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	3 cut(s)	143, 247, 343
BtsCI	GGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	3 cut(s)	128, 239, 275
BveI	ACCTGC	2 cut(s)	104, 350
Cac8I	GCNNGC	1 cut(s)	223
CfoI	GCGC	5 cut(s)	142, 257, 303, 328, 359
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	244
CviAII	CATG	3 cut(s)	144, 226, 344
CviJI	RGCY	5 cut(s)	5, 128, 317, 388, 393
CviKI_1	RGCY	5 cut(s)	5, 128, 317, 388, 393
DdeI	CTNAG	1 cut(s)	389
DinI	GGCGCC	1 cut(s)	302
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	303
Ecl136II	GAGCTC	1 cut(s)	388
Eco130I	CCWWGG	2 cut(s)	143, 343
Eco24I	GRGCYC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	244
Eco53kI	GAGCTC	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	388
EcoT14I	CCWWGG	2 cut(s)	143, 343
EcoT38I	GRGCYC	1 cut(s)	390
EgeI	GGCGCC	1 cut(s)	302
EheI	GGCGCC	1 cut(s)	302
ErhI	CCWWGG	2 cut(s)	143, 343
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	3 cut(s)	147, 229, 347
FaiI	YATR	5 cut(s)	145, 158, 227, 345, 403
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	3 cut(s)	143, 225, 343
FauI	CCCGC	1 cut(s)	250
Fnu4HI	GCNGC	5 cut(s)	46, 162, 237, 299, 355
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	5 cut(s)	46, 162, 237, 299, 355
GlaI	GCGC	5 cut(s)	141, 256, 302, 327, 358
GluI	GCNGC	5 cut(s)	46, 162, 237, 299, 355
GsaI	CCCAGC	1 cut(s)	71
HaeII	RGCGCY	2 cut(s)	143, 304
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	222, 369
HhaI	GCGC	5 cut(s)	142, 257, 303, 328, 359
Hin1I	GRCGYC	1 cut(s)	301
Hin1II	CATG	3 cut(s)	147, 229, 347
Hin6I	GCGC	5 cut(s)	140, 255, 301, 326, 357
HinP1I	GCGC	5 cut(s)	140, 255, 301, 326, 357
HpaII	CCGG	2 cut(s)	222, 369
Hpy188I	TCNGA	1 cut(s)	351
HpyAV	CCTTC	2 cut(s)	28, 372
HpyCH4III	ACNGT	2 cut(s)	248, 294
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	273
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 92, 323, 365
HpyF3I	CTNAG	1 cut(s)	389
HpySE526I	ACGT	1 cut(s)	14
Hsp92I	GRCGYC	1 cut(s)	301
Hsp92II	CATG	3 cut(s)	147, 229, 347
HspAI	GCGC	5 cut(s)	140, 255, 301, 326, 357
KasI	GGCGCC	1 cut(s)	300
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	275
LmnI	GCTCC	3 cut(s)	110, 337, 351
LpnPI	CCDG	8 cut(s)	44, 53, 99, 134, 227, 235, 345, 382
Lsp1109I	GCAGC	1 cut(s)	32
MaeII	ACGT	1 cut(s)	14
MalI	GATC	1 cut(s)	277
MbiI	CCGCTC	1 cut(s)	354
MboI	GATC	1 cut(s)	275
MhlI	GDGCHC	2 cut(s)	342, 390
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	301
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	3 cut(s)	65, 245, 258
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	148
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	222, 369
MvnI	CGCG	2 cut(s)	190, 257
MwoI	GCNNNNNNNGC	4 cut(s)	51, 92, 323, 365
NaeI	GCCGGC	1 cut(s)	223
NarI	GGCGCC	1 cut(s)	301
NcoI	CCATGG	2 cut(s)	143, 343
NdeII	GATC	1 cut(s)	275
NgoMIV	GCCGGC	1 cut(s)	221
NlaIII	CATG	3 cut(s)	147, 229, 347
NlaIV	GGNNCC	1 cut(s)	302
NmeAIII	GCCGAG	1 cut(s)	329
PdiI	GCCGGC	1 cut(s)	223
PkrI	GCNGC	5 cut(s)	47, 163, 238, 300, 356
PluTI	GGCGCC	1 cut(s)	304
Psp124BI	GAGCTC	1 cut(s)	390
PspFI	CCCAGC	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	302
PspPI	GGNCC	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	148
SacI	GAGCTC	1 cut(s)	390
SatI	GCNGC	5 cut(s)	46, 162, 237, 299, 355
Sau3AI	GATC	1 cut(s)	275
Sau96I	GGNCC	1 cut(s)	244
SduI	GDGCHC	2 cut(s)	342, 390
SetI	ASST	5 cut(s)	17, 76, 118, 364, 390
SfoI	GGCGCC	1 cut(s)	302
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	148
SsiI	CCGC	8 cut(s)	161, 174, 190, 236, 257, 288, 298, 354
SspDI	GGCGCC	1 cut(s)	300
SstI	GAGCTC	1 cut(s)	390
StyI	CCWWGG	2 cut(s)	143, 343
TaaI	ACNGT	2 cut(s)	248, 294
TaiI	ACGT	1 cut(s)	17
TauI	GCSGC	4 cut(s)	164, 239, 301, 357
TscAI	CASTG	3 cut(s)	128, 246, 275
TseI	GCWGC	1 cut(s)	45
TspRI	CASTG	3 cut(s)	128, 246, 275
VpaK11BI	GGWCC	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.