Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001967

Physical Location & Seq

Genomic Coordinates Reverse (-)

34972798 .. 34977991

Gene Structure 5194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG332100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCGGAAAGTAACCAAGGGAAACGTGACAATTAAGGTTTGGGACCTTGGAGGGCAACGCAGGTTCCGCACAATGTGGGAGCGTTACTGTCGTGGGGTCTCCGTGATTGTGTATGTAGTTGATGCTGCTGACAGGGACAGCGTTCCAATATCTCGAAGTGAGCTACATGACCTCTTGATGAAACCTTCCTTAAATGGAATTCCTTTACTTGTTCTTGGTAACAAAATCGACAAGTCTGAGGCTCTTTCAAAGCAAGCATTGGTTGAACAGCTGGGCCTTGATTCAATCACGGACAAAGAGGTATGTTGCTACATGATCTCATGCAAGGATTCCATAAACATAGATGTTGTGATTGATTGGCTTATCAAACACTCCAAAGCAGCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0097159 GO:0097367 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

129

Amino Acids

14.52

Weight (kDa)

8.7

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	2 - 123	4.2e-31	ADP-ribosylation factor family
Ras	PF00071	4 - 124	2.1e-11	Ras family
Gtr1_RagA	PF04670	6 - 90	8.1e-06	Gtr1/RagA G protein conserved region
Roc	PF08477	7 - 77	1.5e-08	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37680 AT5G37680
fragaria_vesca	FvH4_1g30280 FvH4_1g30280 FvH4_1g30280 FvH4_2g03780
malus_domestica	MD05G1101000.v1.1 MD09G1271300.v1.1 MD17G1269600.v1.1
prunus_persica	Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.8G145900_v2.0.a1 Prupe.8G145900_v2.0.a1
pyrus_communis	pycom05g09970 pycom09g18230 pycom15g26060 pycom17g26810
rosa_chinensis	RchiOBHm_Chr3g0491081 RchiOBHm_Chr6g0252801
rosa_laevigata	RLG00000017639
rosa_multiflora	Rmu_sc0000829.1_g000043 Rmu_sc0005038.1_g000013 Rmu_ssc0000386.1_g000060
rosa_roxburghii	Rroxscaffold_6G00393230 Rroxscaffold_7G00212420
rosa_rugosa	Rorug03G0245700 Rorug03G0245700 Rorug03G0245800 Rorug03G0245900 Rorug05G0538800 Rorug05G0538800
rosa_samantha	Rh3AG296100 Rh3BG332100 Rh3CG329200 Rh3DG329800 Rh6AG054800 Rh6BG048800 Rh6CG047700 Rh6DG043200
rosa_wichuraiana	Rw3G026130 Rw6G004950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	51
AciI	CCGC	2 cut(s)	4, 67
AcsI	RAATTY	1 cut(s)	198
AdeI	CACNNNGTG	1 cut(s)	75
AgsI	TTSAA	3 cut(s)	249, 266, 285
AluBI	AGCT	2 cut(s)	163, 271
AluI	AGCT	2 cut(s)	163, 271
Alw26I	GTCTC	1 cut(s)	103
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	2 cut(s)	125, 380
ApoI	RAATTY	1 cut(s)	198
AspS9I	GGNCC	2 cut(s)	43, 274
AvaII	GGWCC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	103
BfuAI	ACCTGC	1 cut(s)	51
BisI	GCNGC	2 cut(s)	126, 381
BlsI	GCNGC	2 cut(s)	127, 382
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	43, 274
BmiI	GGNNCC	2 cut(s)	44, 65
BmsI	GCATC	1 cut(s)	112
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	15, 46
BseDI	CCNNGG	2 cut(s)	15, 46
BseMII	CTCAG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	112
BseYI	CCCAGC	1 cut(s)	271
BshFI	GGCC	1 cut(s)	276
BslFI	GGGAC	2 cut(s)	56, 149
BsmAI	GTCTC	1 cut(s)	103
BsmFI	GGGAC	2 cut(s)	56, 149
BsnI	GGCC	1 cut(s)	276
Bso31I	GGTCTC	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	315
BspACI	CCGC	2 cut(s)	4, 67
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	1 cut(s)	229
BspLI	GGNNCC	2 cut(s)	44, 65
BspMI	ACCTGC	1 cut(s)	51
BspTNI	GGTCTC	1 cut(s)	103
BssECI	CCNNGG	2 cut(s)	15, 46
BssMI	GATC	1 cut(s)	315
BssT1I	CCWWGG	2 cut(s)	15, 46
Bst4CI	ACNGT	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	237
BstKTI	GATC	1 cut(s)	318
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	315
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	276
BveI	ACCTGC	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	255
Cfr13I	GGNCC	2 cut(s)	43, 274
CviAII	CATG	3 cut(s)	167, 313, 321
CviJI	RGCY	5 cut(s)	163, 242, 271, 276, 361
CviKI_1	RGCY	5 cut(s)	163, 242, 271, 276, 361
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
DraIII	CACNNNGTG	1 cut(s)	75
Eco130I	CCWWGG	2 cut(s)	15, 46
Eco31I	GGTCTC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	43
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRI	GAATTC	1 cut(s)	198
EcoT14I	CCWWGG	2 cut(s)	15, 46
ErhI	CCWWGG	2 cut(s)	15, 46
FaeI	CATG	3 cut(s)	170, 316, 324
FaiI	YATR	7 cut(s)	114, 168, 304, 314, 322, 335, 341
FaqI	GGGAC	2 cut(s)	56, 149
FatI	CATG	3 cut(s)	166, 312, 320
Fnu4HI	GCNGC	2 cut(s)	126, 381
Fsp4HI	GCNGC	2 cut(s)	126, 381
GluI	GCNGC	2 cut(s)	126, 381
GsaI	CCCAGC	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	276
Hin1II	CATG	3 cut(s)	170, 316, 324
HinfI	GANTC	2 cut(s)	281, 329
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	2 cut(s)	153, 175
HpyAV	CCTTC	1 cut(s)	195
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	1 cut(s)	324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpyF3I	CTNAG	1 cut(s)	237
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	3 cut(s)	170, 316, 324
Kzo9I	GATC	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	3 cut(s)	46, 118, 257
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	1 cut(s)	112
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	4 cut(s)	10, 25, 83, 218
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MluCI	AATT	2 cut(s)	30, 198
MnlI	CCTC	4 cut(s)	44, 182, 232, 292
MseI	TTAA	2 cut(s)	33, 191
MspA1I	CMGCKG	1 cut(s)	271
MwoI	GCNNNNNNNGC	1 cut(s)	66
NdeII	GATC	1 cut(s)	315
NlaIII	CATG	3 cut(s)	170, 316, 324
NlaIV	GGNNCC	2 cut(s)	44, 65
NmuCI	GTSAC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	281, 329
PkrI	GCNGC	2 cut(s)	127, 382
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
PspFI	CCCAGC	1 cut(s)	271
PspN4I	GGNNCC	2 cut(s)	44, 65
PspPI	GGNCC	2 cut(s)	43, 274
PspPPI	RGGWCCY	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	271
SaqAI	TTAA	2 cut(s)	33, 191
SatI	GCNGC	2 cut(s)	126, 381
Sau3AI	GATC	1 cut(s)	315
Sau96I	GGNCC	2 cut(s)	43, 274
SfaNI	GCATC	1 cut(s)	112
SinI	GGWCC	1 cut(s)	43
Sse9I	AATT	2 cut(s)	30, 198
SsiI	CCGC	2 cut(s)	4, 67
StyI	CCWWGG	2 cut(s)	15, 46
TaaI	ACNGT	1 cut(s)	89
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	2 cut(s)	154, 228
TasI	AATT	2 cut(s)	30, 198
TfiI	GAWTC	2 cut(s)	281, 329
Tru1I	TTAA	2 cut(s)	33, 191
Tru9I	TTAA	2 cut(s)	33, 191
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	2 cut(s)	125, 380
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	2 cut(s)	91, 305
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.