Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001967

Physical Location & Seq

Genomic Coordinates Forward (+)

34552195 .. 34565291

Gene Structure 13097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1271300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGTTTGCTGGATTCCTTCCTCAATTGGCTCCGCAGCTTATTTTTTAAACAGGAAATGGAACTTTCACTAGTAGGGCTTCAGAATGCAGGAAAGACATCTCTTTTAAATGCCATTGCTACAGGGGGCTACAGTGAGGACATGATTCCAACTGTTGGATTCAACATGCGAAAAGTAACCAAGGGAAATGTGACAATCAAGGTTTGGGACCTTGGAGGTCAAAGAAGGTTCCGCACAATGTGGGAGCGTTACTGTCGTGGCGTCTCTGTAATTGTCTACGTAGTTGATGCTGCTGACAGAGACAGTATTCCAATAGCTCGAAGTGAGCTGCACGACCTCTTAATGAAACCTTCCTTAAATGGGATTCCGTTACTTGTTCTTGGCAACAAAATCGACAAGTCTGAGGCTCTTTCCAAACAAGCATTGGTTGATCAACTAGGCCTTGATTCAATTACGGACAAAGAAGTGTGCTGCTATATGATCTCTTGCAAGGACTCCATAAATATAGATGTTGTCATCGATTGGCTTATCAAACACTCCAAAACAGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0097159 GO:0097367 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

185

Amino Acids

20.58

Weight (kDa)

8.32

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 178	5.5e-45	ADP-ribosylation factor family
Roc	PF08477	22 - 132	5.7e-16	Ras of Complex, Roc, domain of DAPkinase
SRPRB	PF09439	22 - 146	5.5e-07	Signal recognition particle receptor beta subunit
Ras	PF00071	23 - 179	3.4e-18	Ras family
MMR_HSR1	PF01926	23 - 130	1.6e-07	50S ribosome-binding GTPase
Gtr1_RagA	PF04670	24 - 144	6.5e-09	Gtr1/RagA G protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37680 AT5G37680
fragaria_vesca	FvH4_1g30280 FvH4_1g30280 FvH4_1g30280 FvH4_2g03780
malus_domestica	MD05G1101000.v1.1 MD09G1271300.v1.1 MD17G1269600.v1.1
prunus_persica	Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.8G145900_v2.0.a1 Prupe.8G145900_v2.0.a1
pyrus_communis	pycom05g09970 pycom09g18230 pycom15g26060 pycom17g26810
rosa_chinensis	RchiOBHm_Chr3g0491081 RchiOBHm_Chr6g0252801
rosa_laevigata	RLG00000017639
rosa_multiflora	Rmu_sc0000829.1_g000043 Rmu_sc0005038.1_g000013 Rmu_ssc0000386.1_g000060
rosa_roxburghii	Rroxscaffold_6G00393230 Rroxscaffold_7G00212420
rosa_rugosa	Rorug03G0245700 Rorug03G0245700 Rorug03G0245800 Rorug03G0245900 Rorug05G0538800 Rorug05G0538800
rosa_samantha	Rh3AG296100 Rh3BG332100 Rh3CG329200 Rh3DG329800 Rh6AG054800 Rh6BG048800 Rh6CG047700 Rh6DG043200
rosa_wichuraiana	Rw3G026130 Rw6G004950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	276
AciI	CCGC	2 cut(s)	34, 232
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	261
AdeI	CACNNNGTG	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	155, 360
AgsI	TTSAA	2 cut(s)	163, 450
AhlI	ACTAGT	1 cut(s)	70
AluBI	AGCT	3 cut(s)	39, 317, 328
AluI	AGCT	3 cut(s)	39, 317, 328
Alw26I	GTCTC	2 cut(s)	268, 294
AoxI	GGCC	1 cut(s)	439
ApeKI	GCWGC	4 cut(s)	36, 290, 328, 471
AspS9I	GGNCC	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	208
BbvI	GCAGC	4 cut(s)	48, 277, 315, 458
BcgI	CGANNNNNNTGC	2 cut(s)	373, 407
BclI	TGATCA	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	268, 294
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	2 cut(s)	71, 437
BfmI	CTRYAG	2 cut(s)	120, 130
BisI	GCNGC	4 cut(s)	37, 291, 329, 472
BlsI	GCNGC	4 cut(s)	38, 292, 330, 473
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	3 cut(s)	32, 209, 230
BmsI	GCATC	1 cut(s)	277
Bsa29I	ATCGAT	1 cut(s)	519
BsaAI	YACGTR	1 cut(s)	280
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	180, 211
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 360
Bse3DI	GCAATG	1 cut(s)	114
BseCI	ATCGAT	1 cut(s)	519
BseDI	CCNNGG	2 cut(s)	180, 211
BseLI	CCNNNNNNNGG	2 cut(s)	155, 360
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	393
BseXI	GCAGC	4 cut(s)	48, 277, 315, 458
BsgI	GTGCAG	1 cut(s)	314
BshFI	GGCC	1 cut(s)	441
BshVI	ATCGAT	1 cut(s)	519
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	155, 360
BsmAI	GTCTC	2 cut(s)	268, 294
BsmBI	CGTCTC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	441
Bsp143I	GATC	2 cut(s)	430, 480
BspACI	CCGC	2 cut(s)	34, 232
BspANI	GGCC	1 cut(s)	441
BspCNI	CTCAG	1 cut(s)	394
BspDI	ATCGAT	1 cut(s)	519
BspLI	GGNNCC	3 cut(s)	32, 209, 230
BsrDI	GCAATG	1 cut(s)	114
BssECI	CCNNGG	2 cut(s)	180, 211
BssMI	GATC	2 cut(s)	430, 480
BssNI	GRCGYC	1 cut(s)	261
BssT1I	CCWWGG	2 cut(s)	180, 211
Bst4CI	ACNGT	4 cut(s)	134, 154, 254, 305
BstACI	GRCGYC	1 cut(s)	261
BstBAI	YACGTR	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	402
BstKTI	GATC	2 cut(s)	433, 483
BstMAI	GTCTC	2 cut(s)	268, 294
BstMBI	GATC	2 cut(s)	430, 480
BstNSI	RCATGY	1 cut(s)	169
BstSFI	CTRYAG	2 cut(s)	120, 130
BstSNI	TACGTA	1 cut(s)	280
BstV1I	GCAGC	4 cut(s)	48, 277, 315, 458
Bsu15I	ATCGAT	1 cut(s)	519
BsuRI	GGCC	1 cut(s)	441
BsuTUI	ATCGAT	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	208
ClaI	ATCGAT	1 cut(s)	519
CseI	GACGC	1 cut(s)	250
CviAII	CATG	2 cut(s)	142, 166
CviJI	RGCY	9 cut(s)	31, 39, 79, 129, 317, 328, 407, 441, 526
CviKI_1	RGCY	9 cut(s)	31, 39, 79, 129, 317, 328, 407, 441, 526
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	2 cut(s)	432, 482
DpnII	GATC	2 cut(s)	430, 480
DraI	TTTAAA	2 cut(s)	49, 108
DraIII	CACNNNGTG	1 cut(s)	240
Eco105I	TACGTA	1 cut(s)	280
Eco130I	CCWWGG	2 cut(s)	180, 211
Eco147I	AGGCCT	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	208
EcoT14I	CCWWGG	2 cut(s)	180, 211
ErhI	CCWWGG	2 cut(s)	180, 211
Esp3I	CGTCTC	1 cut(s)	268
FaeI	CATG	2 cut(s)	145, 169
FaiI	YATR	6 cut(s)	143, 167, 477, 479, 500, 506
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	2 cut(s)	141, 165
FbaI	TGATCA	1 cut(s)	430
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	4 cut(s)	37, 291, 329, 472
Fsp4HI	GCNGC	4 cut(s)	37, 291, 329, 472
FspBI	CTAG	2 cut(s)	71, 437
GluI	GCNGC	4 cut(s)	37, 291, 329, 472
HaeIII	GGCC	1 cut(s)	441
HgaI	GACGC	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	145, 169
HinfI	GANTC	6 cut(s)	14, 145, 159, 364, 446, 494
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	2 cut(s)	84, 403
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	3 cut(s)	28, 219, 360
HpyCH4III	ACNGT	4 cut(s)	134, 154, 254, 305
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	3 cut(s)	89, 331, 489
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	145, 169
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	2 cut(s)	430, 480
LmnI	GCTCC	2 cut(s)	36, 244
LpnPI	CCDG	3 cut(s)	38, 75, 108
Lsp1109I	GCAGC	4 cut(s)	48, 277, 315, 458
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	2 cut(s)	71, 437
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	4 cut(s)	175, 190, 248, 369
MalI	GATC	2 cut(s)	432, 482
MboI	GATC	2 cut(s)	430, 480
MfeI	CAATTG	1 cut(s)	25
MluCI	AATT	3 cut(s)	25, 270, 450
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	2 cut(s)	136, 173
MnlI	CCTC	5 cut(s)	32, 130, 209, 347, 397
MseI	TTAA	4 cut(s)	48, 107, 341, 356
MunI	CAATTG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	91
NdeII	GATC	2 cut(s)	430, 480
NlaIII	CATG	2 cut(s)	145, 169
NlaIV	GGNNCC	3 cut(s)	32, 209, 230
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	1 cut(s)	169
PceI	AGGCCT	1 cut(s)	441
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	5 cut(s)	14, 145, 159, 364, 446
PflMI	CCANNNNNTGG	1 cut(s)	155
PkrI	GCNGC	4 cut(s)	38, 292, 330, 473
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
Ppu21I	YACGTR	1 cut(s)	280
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
PspN4I	GGNNCC	3 cut(s)	32, 209, 230
PspPI	GGNCC	1 cut(s)	208
PspPPI	RGGWCCY	1 cut(s)	208
SaqAI	TTAA	4 cut(s)	48, 107, 341, 356
SatI	GCNGC	4 cut(s)	37, 291, 329, 472
Sau3AI	GATC	2 cut(s)	430, 480
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	1 cut(s)	488
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	2 cut(s)	120, 130
SinI	GGWCC	1 cut(s)	208
SnaBI	TACGTA	1 cut(s)	280
SpeI	ACTAGT	1 cut(s)	70
Sse9I	AATT	3 cut(s)	25, 270, 450
SseBI	AGGCCT	1 cut(s)	441
SsiI	CCGC	2 cut(s)	34, 232
SspMI	CTAG	2 cut(s)	71, 437
StuI	AGGCCT	1 cut(s)	441
StyI	CCWWGG	2 cut(s)	180, 211
TaaI	ACNGT	4 cut(s)	134, 154, 254, 305
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	3 cut(s)	319, 393, 519
TasI	AATT	3 cut(s)	25, 270, 450
TfiI	GAWTC	5 cut(s)	14, 145, 159, 364, 446
Tru1I	TTAA	4 cut(s)	48, 107, 341, 356
Tru9I	TTAA	4 cut(s)	48, 107, 341, 356
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	4 cut(s)	36, 290, 328, 471
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	359
TspGWI	ACGGA	2 cut(s)	357, 470
TspRI	CASTG	1 cut(s)	139
Van91I	CCANNNNNTGG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	208
XceI	RCATGY	1 cut(s)	169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	2 cut(s)	71, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.