Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001967

Physical Location & Seq

Genomic Coordinates Forward (+)

16154262 .. 16157108

Gene Structure 2847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G145900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGGTTGTGGGAAGCTTTTCTCAATTGGCTACGAAGCCTCTTTTTCAAGCAAGAAATGGAGCTATCTTTGATAGGCCTTCAAAATGCTGGGAAAACATCACTTGTAAATGTTATTGCAACTGGTGGATATAGTGAAGACATGATCCCGACGGTTGGATTCAATATGAGGAAAGTAACAAAAGGGAATGTCACAATAAAGTTGTGGGATCTTGGTGGTCAACCTAGGTTTCGAAGCATGTGGGAAAGATATTGCCGTGCAGTTTCTTCTATTGTTTATGTTGTGGATGCTGCTGATTATGATAACTTGTCGGTCTCGAGAAGAGAACTTCATGACTTGTTGAGTAAGCCATCACTAAATGGCATTCCCTTGCTAGTACTAGGTAACAAGATTGACAAAAAGGAAGCTCTGTCTAAGCAGGATTTGACAGAAGAAATGGATCTCAAGTCCATTACCGATAGGGAAGTTTGCTGCTTCATGATTTCTTGCAAGAACTCCACCAACATCGATACAGTCATCGACTGGCTAGTAAAGCATTCCAAATCAAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

185

Amino Acids

20.88

Weight (kDa)

8.31

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37680 AT5G37680
fragaria_vesca	FvH4_1g30280 FvH4_1g30280 FvH4_1g30280 FvH4_2g03780
malus_domestica	MD05G1101000.v1.1 MD09G1271300.v1.1 MD17G1269600.v1.1
prunus_persica	Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.8G145900_v2.0.a1 Prupe.8G145900_v2.0.a1
pyrus_communis	pycom05g09970 pycom09g18230 pycom15g26060 pycom17g26810
rosa_chinensis	RchiOBHm_Chr3g0491081 RchiOBHm_Chr6g0252801
rosa_laevigata	RLG00000017639
rosa_multiflora	Rmu_sc0000829.1_g000043 Rmu_sc0005038.1_g000013 Rmu_ssc0000386.1_g000060
rosa_roxburghii	Rroxscaffold_6G00393230 Rroxscaffold_7G00212420
rosa_rugosa	Rorug03G0245700 Rorug03G0245700 Rorug03G0245800 Rorug03G0245900 Rorug05G0538800 Rorug05G0538800
rosa_samantha	Rh3AG296100 Rh3BG332100 Rh3CG329200 Rh3DG329800 Rh6AG054800 Rh6BG048800 Rh6CG047700 Rh6DG043200
rosa_wichuraiana	Rw3G026130 Rw6G004950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	139, 216, 447
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	49, 83, 163
AluBI	AGCT	3 cut(s)	17, 64, 407
AluI	AGCT	3 cut(s)	17, 64, 407
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	3 cut(s)	139, 216, 447
Ama87I	CYCGRG	1 cut(s)	316
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	2 cut(s)	290, 471
Asp700I	GAANNNNTTC	1 cut(s)	18
AspA2I	CCTAGG	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	316
AvrII	CCTAGG	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	277, 458
BccI	CCATC	1 cut(s)	358
BceAI	ACGGC	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	4 cut(s)	225, 374, 380, 527
BisI	GCNGC	2 cut(s)	291, 472
BlnI	CCTAGG	1 cut(s)	224
BlsI	GCNGC	2 cut(s)	292, 473
BmcAI	AGTACT	1 cut(s)	378
BmeT110I	CYCGRG	1 cut(s)	316
BmsI	GCATC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	144
Bpu14I	TTCGAA	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	428
Bsa29I	ATCGAT	1 cut(s)	507
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	127, 527
BseCI	ATCGAT	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	224
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseNI	ACTGG	2 cut(s)	127, 527
BseXI	GCAGC	2 cut(s)	277, 458
BseYI	CCCAGC	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	78
BshVI	ATCGAT	1 cut(s)	507
BsiHKCI	CYCGRG	1 cut(s)	316
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	319
BsmI	GAATGC	2 cut(s)	363, 535
BsnI	GGCC	1 cut(s)	78
Bso31I	GGTCTC	1 cut(s)	319
BsoBI	CYCGRG	1 cut(s)	316
Bsp119I	TTCGAA	1 cut(s)	232
Bsp143I	GATC	3 cut(s)	144, 208, 439
BspANI	GGCC	1 cut(s)	78
BspDI	ATCGAT	1 cut(s)	507
BspHI	TCATGA	2 cut(s)	331, 477
BspPI	GGATC	3 cut(s)	139, 216, 447
BspT104I	TTCGAA	1 cut(s)	232
BspTNI	GGTCTC	1 cut(s)	319
BsrI	ACTGG	2 cut(s)	127, 527
BssECI	CCNNGG	1 cut(s)	224
BssMI	GATC	3 cut(s)	144, 208, 439
BssT1I	CCWWGG	1 cut(s)	224
Bst4CI	ACNGT	2 cut(s)	154, 514
Bst6I	CTCTTC	1 cut(s)	316
BstBI	TTCGAA	1 cut(s)	232
BstDEI	CTNAG	1 cut(s)	414
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	3 cut(s)	147, 211, 442
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	3 cut(s)	144, 208, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	532
BstNSI	RCATGY	1 cut(s)	241
BstV1I	GCAGC	2 cut(s)	277, 458
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	2 cut(s)	208, 439
BstYI	RGATCY	2 cut(s)	208, 439
Bsu15I	ATCGAT	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	78
BsuTUI	ATCGAT	1 cut(s)	507
BtsCI	GGATG	1 cut(s)	292
CciI	TCATGA	2 cut(s)	331, 477
ClaI	ATCGAT	1 cut(s)	507
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	4 cut(s)	142, 238, 332, 478
CviJI	RGCY	8 cut(s)	17, 31, 39, 64, 78, 349, 407, 526
CviKI_1	RGCY	8 cut(s)	17, 31, 39, 64, 78, 349, 407, 526
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	3 cut(s)	146, 210, 441
DpnII	GATC	3 cut(s)	144, 208, 439
Eam1104I	CTCTTC	1 cut(s)	316
EarI	CTCTTC	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	224
Eco147I	AGGCCT	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	319
Eco88I	CYCGRG	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	4 cut(s)	145, 241, 335, 481
FaiI	YATR	8 cut(s)	132, 143, 167, 239, 279, 300, 333, 479
FatI	CATG	4 cut(s)	141, 237, 331, 477
Fnu4HI	GCNGC	2 cut(s)	291, 472
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	2 cut(s)	291, 472
FspBI	CTAG	4 cut(s)	225, 374, 380, 527
GluI	GCNGC	2 cut(s)	291, 472
GsaI	CCCAGC	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	78
Hin1II	CATG	4 cut(s)	145, 241, 335, 481
HincII	GTYRAC	1 cut(s)	221
HindII	GTYRAC	1 cut(s)	221
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	1 cut(s)	159
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188III	TCNNGA	5 cut(s)	148, 316, 318, 332, 478
Hpy8I	GTNNAC	1 cut(s)	221
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	89
HpyCH4III	ACNGT	2 cut(s)	154, 514
HpyCH4V	TGCA	3 cut(s)	119, 260, 489
HpyF10VI	GCNNNNNNNGC	1 cut(s)	532
HpyF3I	CTNAG	1 cut(s)	414
Hsp92II	CATG	4 cut(s)	145, 241, 335, 481
Kzo9I	GATC	3 cut(s)	144, 208, 439
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	4 cut(s)	75, 108, 404, 508
Lsp1109I	GCAGC	2 cut(s)	277, 458
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	4 cut(s)	225, 374, 380, 527
MaeIII	GTNAC	3 cut(s)	175, 190, 383
MalI	GATC	3 cut(s)	146, 210, 441
MboI	GATC	3 cut(s)	144, 208, 439
MboII	GAAGA	4 cut(s)	149, 258, 333, 443
MfeI	CAATTG	1 cut(s)	25
MflI	RGATCY	2 cut(s)	208, 439
MluCI	AATT	2 cut(s)	25, 550
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	2 cut(s)	50, 162
MroXI	GAANNNNTTC	1 cut(s)	18
MunI	CAATTG	1 cut(s)	25
Mva1269I	GAATGC	2 cut(s)	363, 535
MwoI	GCNNNNNNNGC	1 cut(s)	532
NdeII	GATC	3 cut(s)	144, 208, 439
NlaIII	CATG	4 cut(s)	145, 241, 335, 481
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	1 cut(s)	241
NspV	TTCGAA	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	316
PagI	TCATGA	2 cut(s)	331, 477
PceI	AGGCCT	1 cut(s)	78
PctI	GAATGC	2 cut(s)	363, 535
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	292, 473
PspFI	CCCAGC	1 cut(s)	89
PsuI	RGATCY	2 cut(s)	208, 439
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
SatI	GCNGC	2 cut(s)	291, 472
Sau3AI	GATC	3 cut(s)	144, 208, 439
ScaI	AGTACT	1 cut(s)	378
SetI	ASST	6 cut(s)	19, 66, 226, 230, 385, 409
SfaNI	GCATC	1 cut(s)	277
Sfr274I	CTCGAG	1 cut(s)	316
SfuI	TTCGAA	1 cut(s)	232
SlaI	CTCGAG	1 cut(s)	316
SmlI	CTYRAG	2 cut(s)	316, 443
SmoI	CTYRAG	2 cut(s)	316, 443
Sse9I	AATT	2 cut(s)	25, 550
SseBI	AGGCCT	1 cut(s)	78
SspMI	CTAG	4 cut(s)	225, 374, 380, 527
StuI	AGGCCT	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	2 cut(s)	154, 514
TaqI	TCGA	4 cut(s)	232, 317, 507, 519
TaqII	GACCGA	1 cut(s)	301
TasI	AATT	2 cut(s)	25, 550
TatI	WGTACW	1 cut(s)	376
TfiI	GAWTC	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	2 cut(s)	290, 471
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	320, 466
XceI	RCATGY	1 cut(s)	241
XhoI	CTCGAG	1 cut(s)	316
XmaJI	CCTAGG	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	4 cut(s)	225, 374, 380, 527
ZrmI	AGTACT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.