Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001967

Physical Location & Seq

Genomic Coordinates Forward (+)

20762155 .. 20764094

Gene Structure 1940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g26060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGGTTTGTGGGAAGCTTTTCTCAATTGGCTCCGCAGCCTCTTTTTCAAGCAGGAAATGGAACTATCTTTGATAGGACTTCAGAATGCTGGAAAGACTTCTCTTGTAAATGTTGTTGCAACGGGCGGATACAGTGAGGACATGATTCCTACAGTAGGATTCAATATGAAGAAGGTAACCAAGGGGAATGTTACTATAAAGTTGTGGGATCTTGGAGGTCAACCTAGGTTCCGCAGCATGTGGGAGCGATACTGTCGTGCTGTTTCTGCCATATTATGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009615 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0030054 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:0098542 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

95

Amino Acids

10.65

Weight (kDa)

9.22

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37680 AT5G37680
fragaria_vesca	FvH4_1g30280 FvH4_1g30280 FvH4_1g30280 FvH4_2g03780
malus_domestica	MD05G1101000.v1.1 MD09G1271300.v1.1 MD17G1269600.v1.1
prunus_persica	Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.8G145900_v2.0.a1 Prupe.8G145900_v2.0.a1
pyrus_communis	pycom05g09970 pycom09g18230 pycom15g26060 pycom17g26810
rosa_chinensis	RchiOBHm_Chr3g0491081 RchiOBHm_Chr6g0252801
rosa_laevigata	RLG00000017639
rosa_multiflora	Rmu_sc0000829.1_g000043 Rmu_sc0005038.1_g000013 Rmu_ssc0000386.1_g000060
rosa_roxburghii	Rroxscaffold_6G00393230 Rroxscaffold_7G00212420
rosa_rugosa	Rorug03G0245700 Rorug03G0245700 Rorug03G0245800 Rorug03G0245900 Rorug05G0538800 Rorug05G0538800
rosa_samantha	Rh3AG296100 Rh3BG332100 Rh3CG329200 Rh3DG329800 Rh6AG054800 Rh6BG048800 Rh6CG047700 Rh6DG043200
rosa_wichuraiana	Rw3G026130 Rw6G004950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	34, 126, 232
AclWI	GGATC	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	49, 163
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
AlwI	GGATC	1 cut(s)	216
ApeKI	GCWGC	2 cut(s)	36, 234
Asp700I	GAANNNNTTC	2 cut(s)	18, 97
AspA2I	CCTAGG	1 cut(s)	224
AvrII	CCTAGG	1 cut(s)	224
BaeI	ACNNNNGTAYC	2 cut(s)	241, 274
BbvI	GCAGC	2 cut(s)	48, 246
BciVI	GTATCC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	150
BfuI	GTATCC	1 cut(s)	122
BisI	GCNGC	2 cut(s)	37, 235
BlnI	CCTAGG	1 cut(s)	224
BlsI	GCNGC	2 cut(s)	38, 236
BmiI	GGNNCC	2 cut(s)	32, 230
BsaJI	CCNNGG	2 cut(s)	180, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	180, 224
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseXI	GCAGC	2 cut(s)	48, 246
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	3 cut(s)	34, 126, 232
BspLI	GGNNCC	2 cut(s)	32, 230
BspPI	GGATC	1 cut(s)	216
BssECI	CCNNGG	2 cut(s)	180, 224
BssMI	GATC	1 cut(s)	208
BssT1I	CCWWGG	2 cut(s)	180, 224
Bst4CI	ACNGT	3 cut(s)	134, 154, 254
BstEII	GGTNACC	1 cut(s)	175
BstENI	CCTNNNNNAGG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	241
BstPI	GGTNACC	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	48, 246
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	139
CviAII	CATG	2 cut(s)	142, 238
CviJI	RGCY	3 cut(s)	17, 31, 39
CviKI_1	RGCY	3 cut(s)	17, 31, 39
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
EciI	GGCGGA	1 cut(s)	141
Eco130I	CCWWGG	2 cut(s)	180, 224
Eco57I	CTGAAG	1 cut(s)	65
Eco91I	GGTNACC	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	153
EcoO65I	GGTNACC	1 cut(s)	175
EcoT14I	CCWWGG	2 cut(s)	180, 224
ErhI	CCWWGG	2 cut(s)	180, 224
FaeI	CATG	2 cut(s)	145, 241
FaiI	YATR	6 cut(s)	143, 167, 197, 239, 272, 277
FatI	CATG	2 cut(s)	141, 237
Fnu4HI	GCNGC	2 cut(s)	37, 235
Fsp4HI	GCNGC	2 cut(s)	37, 235
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	2 cut(s)	37, 235
Hin1II	CATG	2 cut(s)	145, 241
HincII	GTYRAC	1 cut(s)	221
HindII	GTYRAC	1 cut(s)	221
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	2 cut(s)	145, 159
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	1 cut(s)	84
Hpy8I	GTNNAC	1 cut(s)	221
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	3 cut(s)	134, 154, 254
HpyCH4V	TGCA	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
Hsp92II	CATG	2 cut(s)	145, 241
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	36, 244
LpnPI	CCDG	2 cut(s)	38, 75
Lsp1109I	GCAGC	2 cut(s)	48, 246
MaeI	CTAG	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	175, 190
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	1 cut(s)	181
MfeI	CAATTG	1 cut(s)	25
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	1 cut(s)	25
MnlI	CCTC	3 cut(s)	50, 130, 209
MroXI	GAANNNNTTC	2 cut(s)	18, 97
MunI	CAATTG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	91
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	2 cut(s)	145, 241
NlaIV	GGNNCC	2 cut(s)	32, 230
NspI	RCATGY	1 cut(s)	241
PctI	GAATGC	1 cut(s)	91
PdmI	GAANNNNTTC	2 cut(s)	18, 97
PfeI	GAWTC	2 cut(s)	145, 159
PkrI	GCNGC	2 cut(s)	38, 236
PspEI	GGTNACC	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	32, 230
PsuI	RGATCY	1 cut(s)	208
SatI	GCNGC	2 cut(s)	37, 235
Sau3AI	GATC	1 cut(s)	208
SetI	ASST	5 cut(s)	19, 177, 220, 226, 230
SfcI	CTRYAG	1 cut(s)	150
Sse9I	AATT	1 cut(s)	25
SsiI	CCGC	3 cut(s)	34, 126, 232
SspMI	CTAG	1 cut(s)	225
StyI	CCWWGG	2 cut(s)	180, 224
TaaI	ACNGT	3 cut(s)	134, 154, 254
TasI	AATT	1 cut(s)	25
TfiI	GAWTC	2 cut(s)	145, 159
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	2 cut(s)	36, 234
TspDTI	ATGAA	1 cut(s)	182
TspRI	CASTG	1 cut(s)	139
XagI	CCTNNNNNAGG	1 cut(s)	153
XceI	RCATGY	1 cut(s)	241
XmaJI	CCTAGG	1 cut(s)	224
XmnI	GAANNNNTTC	2 cut(s)	18, 97
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.