Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001967

Physical Location & Seq

Genomic Coordinates Forward (+)

19396319 .. 19399960

Gene Structure 3642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017639

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGGTTTGTGGGAGGCTTTTCTCAATTGGCTCCGTAGCCTCTTTTTCAAGCAGGAAATGGAGCTATCTTTGATAGGACTTCAGAATGCTGGAAAGACTTCTCTTGTAAATGTTGTTGCGACGGGCGGATACAGTGAGGACATGATTCCTACGGTAGGATTCAATATGAAGAAGGTAACCAAAGGGAATGTTACAATAAAATTGTGGGATCTTGGAGGTCAACCCAGGTTTCGTAGCATGTGGGAGCGATACTGTCGTGCGATTTGGCAATGGTGCTTCAAGTTGGAGAACCTTAATCACTTGTCTTGCTTTTGGCCTTTCTTTGCTGTTGGGGTGAGTGCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009615 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0030054 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:0098542 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

116

Amino Acids

13.29

Weight (kDa)

9.18

Isoelectric Point (pI)

29.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	8 - 88	5.1e-20	ADP-ribosylation factor family
Roc	PF08477	22 - 87	4.8e-11	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	23 - 87	5.3e-09	Ras family
Gtr1_RagA	PF04670	24 - 78	7.7e-06	Gtr1/RagA G protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37680 AT5G37680
fragaria_vesca	FvH4_1g30280 FvH4_1g30280 FvH4_1g30280 FvH4_2g03780
malus_domestica	MD05G1101000.v1.1 MD09G1271300.v1.1 MD17G1269600.v1.1
prunus_persica	Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.8G145900_v2.0.a1 Prupe.8G145900_v2.0.a1
pyrus_communis	pycom05g09970 pycom09g18230 pycom15g26060 pycom17g26810
rosa_chinensis	RchiOBHm_Chr3g0491081 RchiOBHm_Chr6g0252801
rosa_laevigata	RLG00000017639
rosa_multiflora	Rmu_sc0000829.1_g000043 Rmu_sc0005038.1_g000013 Rmu_ssc0000386.1_g000060
rosa_roxburghii	Rroxscaffold_6G00393230 Rroxscaffold_7G00212420
rosa_rugosa	Rorug03G0245700 Rorug03G0245700 Rorug03G0245800 Rorug03G0245900 Rorug05G0538800 Rorug05G0538800
rosa_samantha	Rh3AG296100 Rh3BG332100 Rh3CG329200 Rh3DG329800 Rh6AG054800 Rh6BG048800 Rh6CG047700 Rh6DG043200
rosa_wichuraiana	Rw3G026130 Rw6G004950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	49, 163, 280
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw21I	GWGCWC	1 cut(s)	343
Alw44I	GTGCAC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	216
AoxI	GGCC	1 cut(s)	314
ApaLI	GTGCAC	1 cut(s)	339
Asp700I	GAANNNNTTC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	343
BaeI	ACNNNNGTAYC	2 cut(s)	241, 274
Bbv12I	GWGCWC	1 cut(s)	343
BciT130I	CCWGG	1 cut(s)	226
BciVI	GTATCC	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	343
BshFI	GGCC	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	224
BssMI	GATC	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	3 cut(s)	134, 154, 254
BstEII	GGTNACC	1 cut(s)	175
BstENI	CCTNNNNNAGG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstNI	CCWGG	1 cut(s)	226
BstNSI	RCATGY	1 cut(s)	241
BstPI	GGTNACC	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	224
BstSLI	GKGCMC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	139
CviAII	CATG	2 cut(s)	142, 238
CviJI	RGCY	5 cut(s)	17, 31, 39, 64, 316
CviKI_1	RGCY	5 cut(s)	17, 31, 39, 64, 316
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
EciI	GGCGGA	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	65
Eco91I	GGTNACC	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	153
EcoO65I	GGTNACC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	224
FaeI	CATG	2 cut(s)	145, 241
FaiI	YATR	4 cut(s)	143, 167, 239, 346
FatI	CATG	2 cut(s)	141, 237
HaeIII	GGCC	1 cut(s)	316
Hin1II	CATG	2 cut(s)	145, 241
HincII	GTYRAC	1 cut(s)	221
HindII	GTYRAC	1 cut(s)	221
HinfI	GANTC	2 cut(s)	145, 159
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	2 cut(s)	221, 341
Hpy188I	TCNGA	1 cut(s)	84
Hpy8I	GTNNAC	2 cut(s)	221, 341
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	3 cut(s)	134, 154, 254
HpyCH4V	TGCA	1 cut(s)	341
Hsp92II	CATG	2 cut(s)	145, 241
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	3 cut(s)	36, 61, 244
LpnPI	CCDG	4 cut(s)	38, 75, 211, 238
MaeIII	GTNAC	2 cut(s)	175, 190
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	1 cut(s)	181
MfeI	CAATTG	1 cut(s)	25
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	343
MluCI	AATT	2 cut(s)	25, 200
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	4 cut(s)	7, 50, 130, 209
MroXI	GAANNNNTTC	1 cut(s)	97
MseI	TTAA	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	226
MunI	CAATTG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	226
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	2 cut(s)	145, 241
NlaIV	GGNNCC	1 cut(s)	32
NspI	RCATGY	1 cut(s)	241
PctI	GAATGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	145, 159
Psp6I	CCWGG	1 cut(s)	224
PspEI	GGTNACC	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	294
Sau3AI	GATC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	343
SetI	ASST	5 cut(s)	66, 177, 220, 230, 294
Sse9I	AATT	2 cut(s)	25, 200
SsiI	CCGC	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	224
TaaI	ACNGT	3 cut(s)	134, 154, 254
TasI	AATT	2 cut(s)	25, 200
TfiI	GAWTC	2 cut(s)	145, 159
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	182
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	139
VneI	GTGCAC	1 cut(s)	339
XagI	CCTNNNNNAGG	1 cut(s)	153
XceI	RCATGY	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.