Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001967

Physical Location & Seq

Genomic Coordinates Reverse (-)

23011404 .. 23011997

Gene Structure 594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0245800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGCAAATTCCATGCGTTTATTTTCATCAACCTTCATACCCATCTTGCTTCTGGTTGCTATAGAGATGGCGCCAAGAGTCGCTGAGGGTAAGAGTACAGCTGCCGATATTAAACCGAGGACATGCGAGTCTTTGAGCCACAAATTCAAGGGAATGTGCATCAGCTCAAGCAACTGCGCAACAATGTGTAAAAGTGAGGGCTTCTTGGGAGGTAAATGCCAAGGCTTTAGGATGAGATGTTATTGCACCAAGCAGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0097159 GO:0097367 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

86

Amino Acids

9.41

Weight (kDa)

9.2

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gamma-thionin	PF00304	40 - 86	1.1e-17	Gamma-thionin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37680 AT5G37680
fragaria_vesca	FvH4_1g30280 FvH4_1g30280 FvH4_1g30280 FvH4_2g03780
malus_domestica	MD05G1101000.v1.1 MD09G1271300.v1.1 MD17G1269600.v1.1
prunus_persica	Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.8G145900_v2.0.a1 Prupe.8G145900_v2.0.a1
pyrus_communis	pycom05g09970 pycom09g18230 pycom15g26060 pycom17g26810
rosa_chinensis	RchiOBHm_Chr3g0491081 RchiOBHm_Chr6g0252801
rosa_laevigata	RLG00000017639
rosa_multiflora	Rmu_sc0000829.1_g000043 Rmu_sc0005038.1_g000013 Rmu_ssc0000386.1_g000060
rosa_roxburghii	Rroxscaffold_6G00393230 Rroxscaffold_7G00212420
rosa_rugosa	Rorug03G0245700 Rorug03G0245700 Rorug03G0245800 Rorug03G0245900 Rorug05G0538800 Rorug05G0538800
rosa_samantha	Rh3AG296100 Rh3BG332100 Rh3CG329200 Rh3DG329800 Rh6AG054800 Rh6BG048800 Rh6CG047700 Rh6DG043200
rosa_wichuraiana	Rw3G026130 Rw6G004950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	127
Acc16I	TGCGCA	1 cut(s)	178
AccB1I	GGYRCC	1 cut(s)	70
AcsI	RAATTY	2 cut(s)	7, 143
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	97
AgsI	TTSAA	1 cut(s)	148
AluBI	AGCT	2 cut(s)	101, 165
AluI	AGCT	2 cut(s)	101, 165
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	2 cut(s)	7, 143
AspLEI	GCGC	2 cut(s)	73, 179
BanI	GGYRCC	1 cut(s)	70
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	2 cut(s)	50, 61
BfmI	CTRYAG	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	74
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	72
BmsI	GCATC	1 cut(s)	168
Bpu10I	CCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	151
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	116, 220
BseDI	CCNNGG	2 cut(s)	116, 220
BseGI	GGATG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	88
BshNI	GGYRCC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	116, 220
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	220
BstACI	GRCGYC	1 cut(s)	71
BstDEI	CTNAG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	237
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	2 cut(s)	73, 179
BstNSI	RCATGY	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	237
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	260
CfoI	GCGC	2 cut(s)	73, 179
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	2 cut(s)	13, 123
CviJI	RGCY	5 cut(s)	101, 138, 165, 201, 225
CviKI_1	RGCY	5 cut(s)	101, 138, 165, 201, 225
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	1 cut(s)	84
DinI	GGCGCC	1 cut(s)	72
DrdI	GACNNNNNNGTC	1 cut(s)	127
DseDI	GACNNNNNNGTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	220
EgeI	GGCGCC	1 cut(s)	72
EheI	GGCGCC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	2 cut(s)	16, 126
FaiI	YATR	4 cut(s)	14, 38, 62, 124
FatI	CATG	2 cut(s)	12, 122
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	1 cut(s)	244
Fsp4HI	GCNGC	1 cut(s)	102
FspI	TGCGCA	1 cut(s)	178
GlaI	GCGC	2 cut(s)	72, 178
GluI	GCNGC	1 cut(s)	102
HaeII	RGCGCY	1 cut(s)	74
HhaI	GCGC	2 cut(s)	73, 179
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	2 cut(s)	16, 126
Hin6I	GCGC	2 cut(s)	71, 177
HinP1I	GCGC	2 cut(s)	71, 177
HinfI	GANTC	2 cut(s)	78, 128
HpyAV	CCTTC	1 cut(s)	43
HpyCH4V	TGCA	2 cut(s)	159, 246
HpyF3I	CTNAG	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	2 cut(s)	16, 126
HspAI	GCGC	2 cut(s)	71, 177
KasI	GGCGCC	1 cut(s)	70
LpnPI	CCDG	1 cut(s)	38
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	168
MluCI	AATT	2 cut(s)	7, 143
Mly113I	GGCGCC	1 cut(s)	71
MlyI	GAGTC	2 cut(s)	87, 137
MnlI	CCTC	4 cut(s)	79, 111, 190, 203
MseI	TTAA	2 cut(s)	111, 259
MspA1I	CMGCKG	1 cut(s)	101
NarI	GGCGCC	1 cut(s)	71
NlaIII	CATG	2 cut(s)	16, 126
NlaIV	GGNNCC	1 cut(s)	72
NsbI	TGCGCA	1 cut(s)	178
NspI	RCATGY	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	2 cut(s)	86, 136
PluTI	GGCGCC	1 cut(s)	74
PpsI	GAGTC	2 cut(s)	86, 136
PspN4I	GGNNCC	1 cut(s)	72
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	111, 259
SatI	GCNGC	1 cut(s)	102
SchI	GAGTC	2 cut(s)	87, 137
SetI	ASST	4 cut(s)	35, 103, 167, 214
SfaNI	GCATC	1 cut(s)	168
SfcI	CTRYAG	1 cut(s)	60
SfoI	GGCGCC	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	2 cut(s)	7, 143
SspDI	GGCGCC	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	220
TasI	AATT	2 cut(s)	7, 143
TatI	WGTACW	1 cut(s)	95
Tru1I	TTAA	2 cut(s)	111, 259
Tru9I	TTAA	2 cut(s)	111, 259
TscAI	CASTG	1 cut(s)	260
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	2 cut(s)	15, 25
TspRI	CASTG	1 cut(s)	260
XapI	RAATTY	2 cut(s)	7, 143
XceI	RCATGY	1 cut(s)	126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.