Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001967

Physical Location & Seq

Genomic Coordinates Forward (+)

13254337 .. 13256144

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09970.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGGGTTGTGGGAAGCTTTTCTCAATTGGCTGCGAAGCCTCTTTTTCAAGCAAGAAATGGAACTATCCTTAATAGGCCTTCAAAATGCTGGGAAAACATCGCTTGTAAATGTTATTGCAACTGGTGGATATAGTGAAGACATGATCCCGACGGTTGGATTCAATATGAGGAAGGTAACAAAAGGGAATGTCACAATAAAGTTGTGGGATCTTGGTGGTCAGCCAAGGTTTCGAAGCATGTGGGAAAGATATTGCCGTGCAGTTTCCTCTATCTTATGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

95

Amino Acids

10.71

Weight (kDa)

9.25

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37680 AT5G37680
fragaria_vesca	FvH4_1g30280 FvH4_1g30280 FvH4_1g30280 FvH4_2g03780
malus_domestica	MD05G1101000.v1.1 MD09G1271300.v1.1 MD17G1269600.v1.1
prunus_persica	Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.8G145900_v2.0.a1 Prupe.8G145900_v2.0.a1
pyrus_communis	pycom05g09970 pycom09g18230 pycom15g26060 pycom17g26810
rosa_chinensis	RchiOBHm_Chr3g0491081 RchiOBHm_Chr6g0252801
rosa_laevigata	RLG00000017639
rosa_multiflora	Rmu_sc0000829.1_g000043 Rmu_sc0005038.1_g000013 Rmu_ssc0000386.1_g000060
rosa_roxburghii	Rroxscaffold_6G00393230 Rroxscaffold_7G00212420
rosa_rugosa	Rorug03G0245700 Rorug03G0245700 Rorug03G0245800 Rorug03G0245900 Rorug05G0538800 Rorug05G0538800
rosa_samantha	Rh3AG296100 Rh3BG332100 Rh3CG329200 Rh3DG329800 Rh6AG054800 Rh6BG048800 Rh6CG047700 Rh6DG043200
rosa_wichuraiana	Rw3G026130 Rw6G004950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	139, 216
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	49, 83, 163
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
AlwI	GGATC	2 cut(s)	139, 216
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	18
AsuII	TTCGAA	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	18
BceAI	ACGGC	1 cut(s)	240
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	144
Bpu14I	TTCGAA	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	18
BseYI	CCCAGC	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	155
BsnI	GGCC	1 cut(s)	78
Bsp119I	TTCGAA	1 cut(s)	232
Bsp143I	GATC	2 cut(s)	144, 208
BspANI	GGCC	1 cut(s)	78
BspPI	GGATC	2 cut(s)	139, 216
BspT104I	TTCGAA	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	224
BssMI	GATC	2 cut(s)	144, 208
BssT1I	CCWWGG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	154
BstBI	TTCGAA	1 cut(s)	232
BstKTI	GATC	2 cut(s)	147, 211
BstMBI	GATC	2 cut(s)	144, 208
BstNSI	RCATGY	1 cut(s)	241
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	78
BtgZI	GCGATG	1 cut(s)	84
CviAII	CATG	2 cut(s)	142, 238
CviJI	RGCY	5 cut(s)	17, 31, 39, 78, 223
CviKI_1	RGCY	5 cut(s)	17, 31, 39, 78, 223
DpnI	GATC	2 cut(s)	146, 210
DpnII	GATC	2 cut(s)	144, 208
Eco130I	CCWWGG	1 cut(s)	224
Eco147I	AGGCCT	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	224
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	2 cut(s)	145, 241
FaiI	YATR	5 cut(s)	132, 143, 167, 239, 277
FatI	CATG	2 cut(s)	141, 237
Fnu4HI	GCNGC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	32
GluI	GCNGC	1 cut(s)	32
GsaI	CCCAGC	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	145, 241
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	148
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	89, 166
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	119, 260
Hsp92II	CATG	2 cut(s)	145, 241
Kzo9I	GATC	2 cut(s)	144, 208
LpnPI	CCDG	2 cut(s)	75, 108
Lsp1109I	GCAGC	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	175, 190
MalI	GATC	2 cut(s)	146, 210
MboI	GATC	2 cut(s)	144, 208
MboII	GAAGA	1 cut(s)	149
MfeI	CAATTG	1 cut(s)	25
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	3 cut(s)	50, 162, 277
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	1 cut(s)	71
MunI	CAATTG	1 cut(s)	25
NdeII	GATC	2 cut(s)	144, 208
NlaIII	CATG	2 cut(s)	145, 241
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	1 cut(s)	241
NspV	TTCGAA	1 cut(s)	232
PceI	AGGCCT	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	33
PspFI	CCCAGC	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	2 cut(s)	144, 208
SetI	ASST	3 cut(s)	19, 177, 230
SfuI	TTCGAA	1 cut(s)	232
Sse9I	AATT	1 cut(s)	25
SseBI	AGGCCT	1 cut(s)	78
StuI	AGGCCT	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	232
TasI	AATT	1 cut(s)	25
TfiI	GAWTC	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	190
XceI	RCATGY	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.