Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005038.1

Orthogroup ID

OG0001967

Physical Location & Seq

Genomic Coordinates Reverse (-)

54491 .. 58829

Gene Structure 4339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005038.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgggtttgttggataccttcctcaattggcttcgcagcttattcttcaaacaggaaatggaactttcactagtcgggcttcagaatgcaggaaagacatctcttttaaatgccattgctacaggagggtacagtgaggacatgattccaacagttggattcaacatgcggaaagtaaccaagggaaacgtgacaattaaggtttgggaccttggagggcaacgcaggttccgcacaatgtgggagcgttactgtcgtggggtctccgtgattgtgtatgtagttgatgctgctgacagggacagcgttccaatatctcgaagtgagctacatgacctcttgatgaaaccttccttaaatggaattcctttacttgttcttggtaacaaaatcgacaagtctgaggctctttcaaagcaagcattggttgaacagctgggccttgattcaatcacggacaaagaggtatgttgctacatgatctcatgcaaggattccataaacatagatgttgtgattgattggcttatcaaacactccaaagcagcaacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002252 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0097159 GO:0097367 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf

Protein Analysis

184

Amino Acids

20.56

Weight (kDa)

7.64

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37680 AT5G37680
fragaria_vesca	FvH4_1g30280 FvH4_1g30280 FvH4_1g30280 FvH4_2g03780
malus_domestica	MD05G1101000.v1.1 MD09G1271300.v1.1 MD17G1269600.v1.1
prunus_persica	Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.3G017200_v2.0.a1 Prupe.8G145900_v2.0.a1 Prupe.8G145900_v2.0.a1
pyrus_communis	pycom05g09970 pycom09g18230 pycom15g26060 pycom17g26810
rosa_chinensis	RchiOBHm_Chr3g0491081 RchiOBHm_Chr6g0252801
rosa_laevigata	RLG00000017639
rosa_multiflora	Rmu_sc0000829.1_g000043 Rmu_sc0005038.1_g000013 Rmu_ssc0000386.1_g000060
rosa_roxburghii	Rroxscaffold_6G00393230 Rroxscaffold_7G00212420
rosa_rugosa	Rorug03G0245700 Rorug03G0245700 Rorug03G0245800 Rorug03G0245900 Rorug05G0538800 Rorug05G0538800
rosa_samantha	Rh3AG296100 Rh3BG332100 Rh3CG329200 Rh3DG329800 Rh6AG054800 Rh6BG048800 Rh6CG047700 Rh6DG043200
rosa_wichuraiana	Rw3G026130 Rw6G004950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	216
AccB7I	CCANNNNNTGG	1 cut(s)	155
AciI	CCGC	2 cut(s)	169, 232
AcsI	RAATTY	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	65
AdeI	CACNNNGTG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	5 cut(s)	49, 163, 414, 431, 450
AhlI	ACTAGT	1 cut(s)	70
AluBI	AGCT	3 cut(s)	39, 328, 436
AluI	AGCT	3 cut(s)	39, 328, 436
Alw26I	GTCTC	1 cut(s)	268
AoxI	GGCC	1 cut(s)	439
ApeKI	GCWGC	3 cut(s)	36, 290, 545
ApoI	RAATTY	1 cut(s)	363
AspS9I	GGNCC	2 cut(s)	208, 439
AvaII	GGWCC	1 cut(s)	208
BbvI	GCAGC	2 cut(s)	48, 277
BciVI	GTATCC	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	268
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	120
BfuAI	ACCTGC	1 cut(s)	216
BfuI	GTATCC	1 cut(s)	7
BisI	GCNGC	3 cut(s)	37, 291, 546
BlsI	GCNGC	3 cut(s)	38, 292, 547
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	208, 439
BmiI	GGNNCC	2 cut(s)	209, 230
BmsI	GCATC	1 cut(s)	277
BsaI	GGTCTC	1 cut(s)	268
BsaJI	CCNNGG	2 cut(s)	180, 211
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	180, 211
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	393
BseXI	GCAGC	2 cut(s)	48, 277
BseYI	CCCAGC	1 cut(s)	436
BshFI	GGCC	1 cut(s)	441
BslFI	GGGAC	2 cut(s)	221, 314
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	268
BsmFI	GGGAC	2 cut(s)	221, 314
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	441
Bso31I	GGTCTC	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	480
BspACI	CCGC	2 cut(s)	169, 232
BspANI	GGCC	1 cut(s)	441
BspCNI	CTCAG	1 cut(s)	394
BspLI	GGNNCC	2 cut(s)	209, 230
BspMI	ACCTGC	1 cut(s)	216
BspTNI	GGTCTC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	114
BssECI	CCNNGG	2 cut(s)	180, 211
BssMI	GATC	1 cut(s)	480
BssT1I	CCWWGG	2 cut(s)	180, 211
Bst4CI	ACNGT	3 cut(s)	134, 154, 254
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	1 cut(s)	402
BstKTI	GATC	1 cut(s)	483
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	480
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	48, 277
BsuI	GTATCC	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	139
BveI	ACCTGC	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	420
Cfr13I	GGNCC	2 cut(s)	208, 439
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	5 cut(s)	142, 166, 332, 478, 486
CviJI	RGCY	8 cut(s)	31, 39, 79, 328, 407, 436, 441, 526
CviKI_1	RGCY	8 cut(s)	31, 39, 79, 328, 407, 436, 441, 526
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	1 cut(s)	482
DpnII	GATC	1 cut(s)	480
DraI	TTTAAA	1 cut(s)	108
DraIII	CACNNNGTG	1 cut(s)	240
Eco130I	CCWWGG	2 cut(s)	180, 211
Eco31I	GGTCTC	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	363
EcoT14I	CCWWGG	2 cut(s)	180, 211
ErhI	CCWWGG	2 cut(s)	180, 211
FaeI	CATG	5 cut(s)	145, 169, 335, 481, 489
FaiI	YATR	9 cut(s)	143, 167, 279, 333, 469, 479, 487, 500, 506
FaqI	GGGAC	2 cut(s)	221, 314
FatI	CATG	5 cut(s)	141, 165, 331, 477, 485
Fnu4HI	GCNGC	3 cut(s)	37, 291, 546
Fsp4HI	GCNGC	3 cut(s)	37, 291, 546
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	3 cut(s)	37, 291, 546
GsaI	CCCAGC	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	441
Hin1II	CATG	5 cut(s)	145, 169, 335, 481, 489
HinfI	GANTC	4 cut(s)	145, 159, 446, 494
Hpy188I	TCNGA	2 cut(s)	84, 403
Hpy188III	TCNNGA	2 cut(s)	318, 340
HpyAV	CCTTC	2 cut(s)	28, 360
HpyCH4III	ACNGT	3 cut(s)	134, 154, 254
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	2 cut(s)	89, 489
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	5 cut(s)	145, 169, 335, 481, 489
Kzo9I	GATC	1 cut(s)	480
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	6 cut(s)	38, 75, 108, 211, 283, 422
Lsp1109I	GCAGC	2 cut(s)	48, 277
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	4 cut(s)	175, 190, 248, 383
MalI	GATC	1 cut(s)	482
MboI	GATC	1 cut(s)	480
MboII	GAAGA	1 cut(s)	37
MfeI	CAATTG	1 cut(s)	25
MluCI	AATT	3 cut(s)	25, 195, 363
MmeI	TCCRAC	2 cut(s)	136, 173
MnlI	CCTC	7 cut(s)	32, 119, 130, 209, 347, 397, 457
MseI	TTAA	3 cut(s)	107, 198, 356
MspA1I	CMGCKG	1 cut(s)	436
MunI	CAATTG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	91
MwoI	GCNNNNNNNGC	1 cut(s)	231
NdeII	GATC	1 cut(s)	480
NlaIII	CATG	5 cut(s)	145, 169, 335, 481, 489
NlaIV	GGNNCC	2 cut(s)	209, 230
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	1 cut(s)	169
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	4 cut(s)	145, 159, 446, 494
PflMI	CCANNNNNTGG	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	38, 292, 547
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	436
PspN4I	GGNNCC	2 cut(s)	209, 230
PspPI	GGNCC	2 cut(s)	208, 439
PspPPI	RGGWCCY	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	436
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SaqAI	TTAA	3 cut(s)	107, 198, 356
SatI	GCNGC	3 cut(s)	37, 291, 546
Sau3AI	GATC	1 cut(s)	480
Sau96I	GGNCC	2 cut(s)	208, 439
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	208
SpeI	ACTAGT	1 cut(s)	70
Sse9I	AATT	3 cut(s)	25, 195, 363
SsiI	CCGC	2 cut(s)	169, 232
SspMI	CTAG	1 cut(s)	71
StyI	CCWWGG	2 cut(s)	180, 211
TaaI	ACNGT	3 cut(s)	134, 154, 254
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	2 cut(s)	319, 393
TasI	AATT	3 cut(s)	25, 195, 363
TfiI	GAWTC	4 cut(s)	145, 159, 446, 494
Tru1I	TTAA	3 cut(s)	107, 198, 356
Tru9I	TTAA	3 cut(s)	107, 198, 356
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	3 cut(s)	36, 290, 545
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	359
TspGWI	ACGGA	2 cut(s)	256, 470
TspRI	CASTG	1 cut(s)	139
Van91I	CCANNNNNTGG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	1 cut(s)	363
XceI	RCATGY	1 cut(s)	169
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.