Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003106

Physical Location & Seq

Genomic Coordinates Forward (+)

15524173 .. 15525045

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G38760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGTCAAGCAACTCCCAGAACATTAGCTTCCAAGCTGGCCAGGCCAAGGGCCAAACTCAGGAGAAGGCTAGCACCATGATGGACAAGGCTAGCAATGCTGCCCAATCTGCCAAGGAGTCTCTCAAAGAGACCGGCCAGCAGATTAAGGAGAAGGCACAAGGAGCTACCGAATCAGTGAAGAACGCCACCGGCATGAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

67

Amino Acids

7.05

Weight (kDa)

9.46

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38760 AT5G53820
fragaria_vesca	FvH4_6g45800 FvH4_6g45800 FvH4_6g45802
malus_domestica	MD09G1079600.v1.1 MD17G1070100.v1.1
prunus_persica	Prupe.3G244100_v2.0.a1 Prupe.3G244200_v2.0.a1 Prupe.3G244200_v2.0.a1 Prupe.3G244300_v2.0.a1 Prupe.3G244400_v2.0.a1 Prupe.3G244500_v2.0.a1 Prupe.3G244600_v2.0.a1 Prupe.3G244700_v2.0.a1
pyrus_communis	pycom09g00640 pycom17g07010
rosa_chinensis	RchiOBHm_Chr2g0163981 RchiOBHm_Chr2g0163991 RchiOBHm_Chr2g0164011
rosa_laevigata	RLG00000021431
rosa_multiflora	Rmu_ssc0000432.1_g000017
rosa_roxburghii	Rroxscaffold_2G00086860 Rroxscaffold_2G00086870
rosa_rugosa	Rorug02G0505900 Rorug02G0506000 Rorug02G0506100
rosa_samantha	Rh2AG574000 Rh2AG574200 Rh2BG584800 Rh2BG584900 Rh2CG555700 Rh2CG555800 Rh2DG594100 Rh2DG594300
rosa_wichuraiana	Rw2G047480 Rw2G047490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	37, 133
AfiI	CCNNNNNNNGG	2 cut(s)	46, 58
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	3 cut(s)	27, 35, 164
AluI	AGCT	3 cut(s)	27, 35, 164
Alw26I	GTCTC	2 cut(s)	122, 123
AoxI	GGCC	4 cut(s)	37, 42, 49, 133
ApeKI	GCWGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	49
AsuNHI	GCTAGC	2 cut(s)	68, 89
BalI	TGGCCA	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	41
BcoDI	GTCTC	2 cut(s)	122, 123
BfaI	CTAG	2 cut(s)	69, 90
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	41
BmtI	GCTAGC	2 cut(s)	72, 93
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	45, 111
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 58
Bse118I	RCCGGY	2 cut(s)	131, 188
Bse3DI	GCAATG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	45, 111
BseLI	CCNNNNNNNGG	2 cut(s)	46, 58
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	85
BshFI	GGCC	4 cut(s)	39, 44, 51, 135
BsiSI	CCGG	2 cut(s)	132, 189
BslI	CCNNNNNNNGG	2 cut(s)	46, 58
BsmAI	GTCTC	2 cut(s)	122, 123
BsnI	GGCC	4 cut(s)	39, 44, 51, 135
Bso31I	GGTCTC	1 cut(s)	122
BspANI	GGCC	4 cut(s)	39, 44, 51, 135
BspCNI	CTCAG	1 cut(s)	70
BspOI	GCTAGC	2 cut(s)	72, 93
BspTNI	GGTCTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	100
BsrFI	RCCGGY	2 cut(s)	131, 188
BssAI	RCCGGY	2 cut(s)	131, 188
BssECI	CCNNGG	2 cut(s)	45, 111
BssT1I	CCWWGG	2 cut(s)	45, 111
Bst2UI	CCWGG	1 cut(s)	41
BstC8I	GCNNGC	4 cut(s)	37, 70, 91, 137
BstDEI	CTNAG	1 cut(s)	57
BstMAI	GTCTC	2 cut(s)	122, 123
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 95, 107, 161
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	85
BsuRI	GGCC	4 cut(s)	39, 44, 51, 135
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	4 cut(s)	37, 70, 91, 137
Cfr10I	RCCGGY	2 cut(s)	131, 188
Cfr13I	GGNCC	1 cut(s)	49
CviAII	CATG	2 cut(s)	76, 193
CviJI	RGCY	9 cut(s)	27, 35, 39, 44, 51, 68, 89, 135, 164
CviKI_1	RGCY	9 cut(s)	27, 35, 39, 44, 51, 68, 89, 135, 164
DdeI	CTNAG	1 cut(s)	57
EaeI	YGGCCR	2 cut(s)	37, 133
Eco130I	CCWWGG	2 cut(s)	45, 111
Eco31I	GGTCTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	39
EcoT14I	CCWWGG	2 cut(s)	45, 111
ErhI	CCWWGG	2 cut(s)	45, 111
FaeI	CATG	2 cut(s)	79, 196
FaiI	YATR	2 cut(s)	77, 194
FatI	CATG	2 cut(s)	75, 192
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	2 cut(s)	69, 90
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	4 cut(s)	39, 44, 51, 135
HapII	CCGG	2 cut(s)	132, 189
Hin1II	CATG	2 cut(s)	79, 196
HinfI	GANTC	2 cut(s)	116, 170
HpaII	CCGG	2 cut(s)	132, 189
Hpy188III	TCNNGA	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	58, 145
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 95, 107, 161
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	79, 196
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	7 cut(s)	21, 26, 29, 44, 53, 145, 149
Lsp1109I	GCAGC	1 cut(s)	85
MaeI	CTAG	2 cut(s)	69, 90
MboII	GAAGA	1 cut(s)	190
MlsI	TGGCCA	1 cut(s)	39
MluNI	TGGCCA	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	125
Mox20I	TGGCCA	1 cut(s)	39
MscI	TGGCCA	1 cut(s)	39
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	2 cut(s)	77, 191
Msp20I	TGGCCA	1 cut(s)	39
MspI	CCGG	2 cut(s)	132, 189
MspR9I	CCNGG	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	4 cut(s)	41, 95, 107, 161
NheI	GCTAGC	2 cut(s)	68, 89
NlaIII	CATG	2 cut(s)	79, 196
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	49
RseI	CAYNNNNRTG	2 cut(s)	77, 191
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	1 cut(s)	99
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	41
SetI	ASST	3 cut(s)	29, 37, 166
SmiMI	CAYNNNNRTG	2 cut(s)	77, 191
SspMI	CTAG	2 cut(s)	69, 90
StyD4I	CCNGG	1 cut(s)	39
StyI	CCWWGG	2 cut(s)	45, 111
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	1 cut(s)	98
TspRI	CASTG	1 cut(s)	180
XspI	CTAG	2 cut(s)	69, 90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.