Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003106

Physical Location & Seq

Genomic Coordinates Reverse (-)

5595448 .. 5596202

Gene Structure 755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1079600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGCTGACAACACTCAGAAGATGAGCTACAACGCTGGAGTGGCCAAGGGCCAAGCTCAGGAGAAGACCAGCACAATGATGGACAAGGCCAACAGTGCCGCCCAGTCTGCTATGGGAACAATGCAGGGTGCTGGCCAGACTGTGCAGGCCAAGGCAGTGGGTGCTGTCGACGCAGTCAAGAACGCTACCGGCATGAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

68

Amino Acids

6.78

Weight (kDa)

9.52

Isoelectric Point (pI)

19.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38760 AT5G53820
fragaria_vesca	FvH4_6g45800 FvH4_6g45800 FvH4_6g45802
malus_domestica	MD09G1079600.v1.1 MD17G1070100.v1.1
prunus_persica	Prupe.3G244100_v2.0.a1 Prupe.3G244200_v2.0.a1 Prupe.3G244200_v2.0.a1 Prupe.3G244300_v2.0.a1 Prupe.3G244400_v2.0.a1 Prupe.3G244500_v2.0.a1 Prupe.3G244600_v2.0.a1 Prupe.3G244700_v2.0.a1
pyrus_communis	pycom09g00640 pycom17g07010
rosa_chinensis	RchiOBHm_Chr2g0163981 RchiOBHm_Chr2g0163991 RchiOBHm_Chr2g0164011
rosa_laevigata	RLG00000021431
rosa_multiflora	Rmu_ssc0000432.1_g000017
rosa_roxburghii	Rroxscaffold_2G00086860 Rroxscaffold_2G00086870
rosa_rugosa	Rorug02G0505900 Rorug02G0506000 Rorug02G0506100
rosa_samantha	Rh2AG574000 Rh2AG574200 Rh2BG584800 Rh2BG584900 Rh2CG555700 Rh2CG555800 Rh2DG594100 Rh2DG594300
rosa_wichuraiana	Rw2G047480 Rw2G047490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	1 cut(s)	99
AcoI	YGGCCR	2 cut(s)	42, 133
AfiI	CCNNNNNNNGG	1 cut(s)	58
AluBI	AGCT	2 cut(s)	27, 56
AluI	AGCT	2 cut(s)	27, 56
AoxI	GGCC	5 cut(s)	42, 49, 87, 133, 147
AspS9I	GGNCC	1 cut(s)	49
BalI	TGGCCA	2 cut(s)	44, 135
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BbsI	GAAGAC	1 cut(s)	71
BccI	CCATC	1 cut(s)	73
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	49
BmrI	ACTGGG	1 cut(s)	97
BmuI	ACTGGG	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	57
Bpu10I	CCTNAGC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	45, 150
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	103
BseDI	CCNNGG	2 cut(s)	45, 150
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	2 cut(s)	29, 71
BseNI	ACTGG	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	164
BshFI	GGCC	5 cut(s)	44, 51, 89, 135, 149
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	58
BsnI	GGCC	5 cut(s)	44, 51, 89, 135, 149
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	5 cut(s)	44, 51, 89, 135, 149
BspCNI	CTCAG	2 cut(s)	28, 70
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	103
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	45, 150
BssT1I	CCWWGG	2 cut(s)	45, 150
Bst4CI	ACNGT	2 cut(s)	95, 142
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	133, 147
BstDEI	CTNAG	2 cut(s)	15, 57
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 95, 107, 161, 170
BstV2I	GAAGAC	1 cut(s)	71
BstXI	CCANNNNNNTGG	1 cut(s)	157
BsuRI	GGCC	5 cut(s)	44, 51, 89, 135, 149
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	2 cut(s)	100, 162
Cac8I	GCNNGC	2 cut(s)	133, 147
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	49
CseI	GACGC	1 cut(s)	179
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	8 cut(s)	5, 27, 44, 51, 56, 89, 135, 149
CviKI_1	RGCY	8 cut(s)	5, 27, 44, 51, 56, 89, 135, 149
DdeI	CTNAG	2 cut(s)	15, 57
EaeI	YGGCCR	2 cut(s)	42, 133
Eco130I	CCWWGG	2 cut(s)	45, 150
EcoT14I	CCWWGG	2 cut(s)	45, 150
ErhI	CCWWGG	2 cut(s)	45, 150
FaeI	CATG	1 cut(s)	196
FaiI	YATR	2 cut(s)	113, 194
FatI	CATG	1 cut(s)	192
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	99
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	5 cut(s)	44, 51, 89, 135, 149
HapII	CCGG	1 cut(s)	189
HgaI	GACGC	1 cut(s)	179
Hin1II	CATG	1 cut(s)	196
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	189
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	2 cut(s)	59, 178
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	1 cut(s)	173
HpyCH4III	ACNGT	2 cut(s)	95, 142
HpyCH4V	TGCA	2 cut(s)	124, 145
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 95, 107, 161, 170
HpyF3I	CTNAG	2 cut(s)	15, 57
Hsp92II	CATG	1 cut(s)	196
LpnPI	CCDG	8 cut(s)	21, 44, 82, 110, 116, 117, 131, 149
MboII	GAAGA	2 cut(s)	31, 76
MlsI	TGGCCA	2 cut(s)	44, 135
MluNI	TGGCCA	2 cut(s)	44, 135
Mox20I	TGGCCA	2 cut(s)	44, 135
MscI	TGGCCA	2 cut(s)	44, 135
MslI	CAYNNNNRTG	1 cut(s)	77
Msp20I	TGGCCA	2 cut(s)	44, 135
MspI	CCGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	5 cut(s)	41, 95, 107, 161, 170
NlaIII	CATG	1 cut(s)	196
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	100
PspPI	GGNCC	1 cut(s)	49
PsyI	GACNNNGTC	1 cut(s)	173
RseI	CAYNNNNRTG	1 cut(s)	77
SalI	GTCGAC	1 cut(s)	167
SatI	GCNGC	1 cut(s)	99
Sau96I	GGNCC	1 cut(s)	49
SetI	ASST	2 cut(s)	29, 58
SmiMI	CAYNNNNRTG	1 cut(s)	77
SsiI	CCGC	1 cut(s)	99
StyI	CCWWGG	2 cut(s)	45, 150
TaaI	ACNGT	2 cut(s)	95, 142
TaqI	TCGA	1 cut(s)	168
TauI	GCSGC	1 cut(s)	101
TscAI	CASTG	2 cut(s)	100, 162
TspRI	CASTG	2 cut(s)	100, 162
Tth111I	GACNNNGTC	1 cut(s)	173
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XmiI	GTMKAC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.