Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003106

Physical Location & Seq

Genomic Coordinates Forward (+)

79224394 .. 79225107

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53212

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGATAACTCGCAGAAGATGAGCTACCACGCTGGTGAGGCCAAGGGCCAAGCTCAGGAGAAGACCAGCACCATGATGGACAAGGCCGGGAATGTTGCACAGTCCGCCAAGGAATCGATGCAGAATGCTGGCCAAGCTATTCAGCAAACGGCTGCGGGAGCTGCTGACGCCGTCAAGAATGCTACTGGCATGAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

66

Amino Acids

6.82

Weight (kDa)

8.06

Isoelectric Point (pI)

34.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38760 AT5G53820
fragaria_vesca	FvH4_6g45800 FvH4_6g45800 FvH4_6g45802
malus_domestica	MD09G1079600.v1.1 MD17G1070100.v1.1
prunus_persica	Prupe.3G244100_v2.0.a1 Prupe.3G244200_v2.0.a1 Prupe.3G244200_v2.0.a1 Prupe.3G244300_v2.0.a1 Prupe.3G244400_v2.0.a1 Prupe.3G244500_v2.0.a1 Prupe.3G244600_v2.0.a1 Prupe.3G244700_v2.0.a1
pyrus_communis	pycom09g00640 pycom17g07010
rosa_chinensis	RchiOBHm_Chr2g0163981 RchiOBHm_Chr2g0163991 RchiOBHm_Chr2g0164011
rosa_laevigata	RLG00000021431
rosa_multiflora	Rmu_ssc0000432.1_g000017
rosa_roxburghii	Rroxscaffold_2G00086860 Rroxscaffold_2G00086870
rosa_rugosa	Rorug02G0505900 Rorug02G0506000 Rorug02G0506100
rosa_samantha	Rh2AG574000 Rh2AG574200 Rh2BG584800 Rh2BG584900 Rh2CG555700 Rh2CG555800 Rh2DG594100 Rh2DG594300
rosa_wichuraiana	Rw2G047480 Rw2G047490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	105, 155
AcoI	YGGCCR	1 cut(s)	130
AcyI	GRCGYC	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	55
AleI	CACNNNNGTG	1 cut(s)	33
AluBI	AGCT	4 cut(s)	24, 53, 137, 161
AluI	AGCT	4 cut(s)	24, 53, 137, 161
AoxI	GGCC	4 cut(s)	39, 46, 84, 130
ApeKI	GCWGC	2 cut(s)	152, 161
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	132
BarI	GAAGNNNNNNTAC	2 cut(s)	8, 40
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	139, 148
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	2 cut(s)	155, 165
BcnI	CCSGG	1 cut(s)	88
BisI	GCNGC	2 cut(s)	153, 162
BlsI	GCNGC	2 cut(s)	154, 163
Bme1390I	CCNGG	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	88
BmsI	GCATC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	68
Bpu10I	CCTNAGC	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	88
Bsa29I	ATCGAT	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	42, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	190
BseCI	ATCGAT	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	42, 108
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	190
BseXI	GCAGC	2 cut(s)	139, 148
BshFI	GGCC	4 cut(s)	41, 48, 86, 132
BshVI	ATCGAT	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmI	GAATGC	2 cut(s)	130, 184
BsnI	GGCC	4 cut(s)	41, 48, 86, 132
BspACI	CCGC	2 cut(s)	105, 155
BspANI	GGCC	4 cut(s)	41, 48, 86, 132
BspCNI	CTCAG	1 cut(s)	67
BspDI	ATCGAT	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	42, 108
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	2 cut(s)	42, 108
Bst4CI	ACNGT	1 cut(s)	102
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 104, 134, 158, 161, 167
BstSCI	CCNGG	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	139, 148
BstV2I	GAAGAC	1 cut(s)	68
Bsu15I	ATCGAT	1 cut(s)	116
BsuRI	GGCC	4 cut(s)	41, 48, 86, 132
BsuTUI	ATCGAT	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	46
ClaI	ATCGAT	1 cut(s)	116
CseI	GACGC	1 cut(s)	176
CviAII	CATG	2 cut(s)	73, 190
CviJI	RGCY	9 cut(s)	24, 41, 48, 53, 86, 132, 137, 152, 161
CviKI_1	RGCY	9 cut(s)	24, 41, 48, 53, 86, 132, 137, 152, 161
DdeI	CTNAG	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	130
EciI	GGCGGA	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	42, 108
EcoT14I	CCWWGG	2 cut(s)	42, 108
ErhI	CCWWGG	2 cut(s)	42, 108
FaeI	CATG	2 cut(s)	76, 193
FaiI	YATR	2 cut(s)	74, 191
FatI	CATG	2 cut(s)	72, 189
FauI	CCCGC	1 cut(s)	148
Fnu4HI	GCNGC	2 cut(s)	153, 162
Fsp4HI	GCNGC	2 cut(s)	153, 162
GluI	GCNGC	2 cut(s)	153, 162
HaeIII	GGCC	4 cut(s)	41, 48, 86, 132
HapII	CCGG	1 cut(s)	87
HgaI	GACGC	1 cut(s)	176
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	76, 193
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	47
Hpy188III	TCNNGA	2 cut(s)	56, 175
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4V	TGCA	2 cut(s)	98, 121
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 104, 134, 158, 161, 167
HpyF3I	CTNAG	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	76, 193
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	6 cut(s)	18, 41, 79, 100, 114, 171
Lsp1109I	GCAGC	2 cut(s)	139, 148
LweI	GCATC	1 cut(s)	108
MboII	GAAGA	2 cut(s)	28, 73
MlsI	TGGCCA	1 cut(s)	132
MluNI	TGGCCA	1 cut(s)	132
MnlI	CCTC	1 cut(s)	31
Mox20I	TGGCCA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	132
MslI	CAYNNNNRTG	2 cut(s)	33, 74
Msp20I	TGGCCA	1 cut(s)	132
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	88
Mva1269I	GAATGC	2 cut(s)	130, 184
MwoI	GCNNNNNNNGC	6 cut(s)	38, 104, 134, 158, 161, 167
NciI	CCSGG	1 cut(s)	88
NlaIII	CATG	2 cut(s)	76, 193
OliI	CACNNNNGTG	1 cut(s)	33
PctI	GAATGC	2 cut(s)	130, 184
PfeI	GAWTC	1 cut(s)	113
PflFI	GACNNNGTC	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	154, 163
PspPI	GGNCC	1 cut(s)	46
PsyI	GACNNNGTC	1 cut(s)	170
RseI	CAYNNNNRTG	2 cut(s)	33, 74
SatI	GCNGC	2 cut(s)	153, 162
Sau96I	GGNCC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	88
SetI	ASST	4 cut(s)	26, 55, 139, 163
SfaNI	GCATC	1 cut(s)	108
SmiMI	CAYNNNNRTG	2 cut(s)	33, 74
SsiI	CCGC	2 cut(s)	105, 155
StyD4I	CCNGG	1 cut(s)	86
StyI	CCWWGG	2 cut(s)	42, 108
TaaI	ACNGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	113
TseI	GCWGC	2 cut(s)	152, 161
Tth111I	GACNNNGTC	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.