Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003106

Physical Location & Seq

Genomic Coordinates Forward (+)

74756706 .. 74763669

Gene Structure 6964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G047490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGATAACTCGCAGAAGATGAGCTACCACGCTGGTGAGGCCAAGGGCCAAGCTCAGGAGAAGGCCAACACAATGATGGACAAAGCCGGGAATGCAGCGCAATCCGCCAAGGAATCAATGCAGAATGCAGGAGAACAGGTGCAGGCTAAGGCACAGGGAGCTGCTGACGCTGTCAAGGATGCCACTGGCATGAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

66

Amino Acids

6.86

Weight (kDa)

6.54

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38760 AT5G53820
fragaria_vesca	FvH4_6g45800 FvH4_6g45800 FvH4_6g45802
malus_domestica	MD09G1079600.v1.1 MD17G1070100.v1.1
prunus_persica	Prupe.3G244100_v2.0.a1 Prupe.3G244200_v2.0.a1 Prupe.3G244200_v2.0.a1 Prupe.3G244300_v2.0.a1 Prupe.3G244400_v2.0.a1 Prupe.3G244500_v2.0.a1 Prupe.3G244600_v2.0.a1 Prupe.3G244700_v2.0.a1
pyrus_communis	pycom09g00640 pycom17g07010
rosa_chinensis	RchiOBHm_Chr2g0163981 RchiOBHm_Chr2g0163991 RchiOBHm_Chr2g0164011
rosa_laevigata	RLG00000021431
rosa_multiflora	Rmu_ssc0000432.1_g000017
rosa_roxburghii	Rroxscaffold_2G00086860 Rroxscaffold_2G00086870
rosa_rugosa	Rorug02G0505900 Rorug02G0506000 Rorug02G0506100
rosa_samantha	Rh2AG574000 Rh2AG574200 Rh2BG584800 Rh2BG584900 Rh2CG555700 Rh2CG555800 Rh2DG594100 Rh2DG594300
rosa_wichuraiana	Rw2G047480 Rw2G047490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	55
AleI	CACNNNNGTG	1 cut(s)	33
AluBI	AGCT	3 cut(s)	24, 53, 161
AluI	AGCT	3 cut(s)	24, 53, 161
AoxI	GGCC	3 cut(s)	39, 46, 63
ApeKI	GCWGC	2 cut(s)	95, 161
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	47
BarI	GAAGNNNNNNTAC	2 cut(s)	8, 40
BbvI	GCAGC	2 cut(s)	107, 148
BccI	CCATC	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	88
BisI	GCNGC	2 cut(s)	96, 162
BlsI	GCNGC	2 cut(s)	97, 163
Bme1390I	CCNGG	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	88
BmsI	GCATC	1 cut(s)	169
Bpu10I	CCTNAGC	2 cut(s)	54, 147
BpuMI	CCSGG	1 cut(s)	88
BsaJI	CCNNGG	2 cut(s)	42, 108
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	190
BseDI	CCNNGG	2 cut(s)	42, 108
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	190
BseXI	GCAGC	2 cut(s)	107, 148
BsgI	GTGCAG	1 cut(s)	161
BshFI	GGCC	3 cut(s)	41, 48, 65
BsiSI	CCGG	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmI	GAATGC	2 cut(s)	97, 130
BsnI	GGCC	3 cut(s)	41, 48, 65
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	3 cut(s)	41, 48, 65
BspCNI	CTCAG	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	42, 108
BssT1I	CCWWGG	2 cut(s)	42, 108
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	2 cut(s)	54, 147
BstF5I	GGATG	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 92, 104, 158, 167
BstSCI	CCNGG	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	107, 148
BsuRI	GGCC	3 cut(s)	41, 48, 65
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	144
CfoI	GCGC	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	46
CseI	GACGC	1 cut(s)	176
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	8 cut(s)	24, 41, 48, 53, 65, 86, 146, 161
CviKI_1	RGCY	8 cut(s)	24, 41, 48, 53, 65, 86, 146, 161
DdeI	CTNAG	2 cut(s)	54, 147
EciI	GGCGGA	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	42, 108
EcoT14I	CCWWGG	2 cut(s)	42, 108
ErhI	CCWWGG	2 cut(s)	42, 108
FaeI	CATG	1 cut(s)	193
FaiI	YATR	1 cut(s)	191
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	96, 162
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	2 cut(s)	96, 162
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	2 cut(s)	96, 162
HaeIII	GGCC	3 cut(s)	41, 48, 65
HapII	CCGG	1 cut(s)	87
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	100
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	47
Hpy188III	TCNNGA	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	55
HpyCH4V	TGCA	4 cut(s)	95, 121, 128, 142
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 92, 104, 158, 167
HpyF3I	CTNAG	2 cut(s)	54, 147
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	8 cut(s)	18, 41, 100, 114, 122, 128, 140, 171
Lsp1109I	GCAGC	2 cut(s)	107, 148
LweI	GCATC	1 cut(s)	169
MboII	GAAGA	1 cut(s)	28
MnlI	CCTC	1 cut(s)	31
MslI	CAYNNNNRTG	3 cut(s)	33, 74, 188
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	88
Mva1269I	GAATGC	2 cut(s)	97, 130
MwoI	GCNNNNNNNGC	5 cut(s)	38, 92, 104, 158, 167
NciI	CCSGG	1 cut(s)	88
NlaIII	CATG	1 cut(s)	193
OliI	CACNNNNGTG	1 cut(s)	33
PctI	GAATGC	2 cut(s)	97, 130
PfeI	GAWTC	1 cut(s)	113
PflFI	GACNNNGTC	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	97, 163
PspPI	GGNCC	1 cut(s)	46
PsyI	GACNNNGTC	1 cut(s)	170
RseI	CAYNNNNRTG	3 cut(s)	33, 74, 188
SatI	GCNGC	2 cut(s)	96, 162
Sau96I	GGNCC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	88
SetI	ASST	4 cut(s)	26, 55, 141, 163
SfaNI	GCATC	1 cut(s)	169
SmiMI	CAYNNNNRTG	3 cut(s)	33, 74, 188
SsiI	CCGC	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	86
StyI	CCWWGG	2 cut(s)	42, 108
TfiI	GAWTC	1 cut(s)	113
TscAI	CASTG	1 cut(s)	190
TseI	GCWGC	2 cut(s)	95, 161
TspRI	CASTG	1 cut(s)	190
Tth111I	GACNNNGTC	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.