Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0003106

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG574000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGATAACTCGCAGAAGATGAGCTACAACGCCGGTGTGGCCAAGGGCCAAACTCAGGAGAAGGCCAACACCATGATGGAAAAGGCCGGGAATGTTGCACAGTCCGCCAAGGAATCGATACAGAATGCTGGCCAAGTGGATAACTCGCAGAAGATGAGCTACAACGCTGGTGTGGCCAAGGGACAAACTCAGGAGAAGACCAGCACCATGATGGACAAGGCCGGGAATGTTGCACAGTCTGCCAAGGAATCGATGCAGACTGCTGGCCAAACGATTCAGCAAAAGGCTGCGGGAGCTGCTGACGCCGTCAAGAATGCTACTGGCATGAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

11.57

Weight (kDa)

9.4

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38760 AT5G53820
fragaria_vesca	FvH4_6g45800 FvH4_6g45800 FvH4_6g45802
malus_domestica	MD09G1079600.v1.1 MD17G1070100.v1.1
prunus_persica	Prupe.3G244100_v2.0.a1 Prupe.3G244200_v2.0.a1 Prupe.3G244200_v2.0.a1 Prupe.3G244300_v2.0.a1 Prupe.3G244400_v2.0.a1 Prupe.3G244500_v2.0.a1 Prupe.3G244600_v2.0.a1 Prupe.3G244700_v2.0.a1
pyrus_communis	pycom09g00640 pycom17g07010
rosa_chinensis	RchiOBHm_Chr2g0163981 RchiOBHm_Chr2g0163991 RchiOBHm_Chr2g0164011
rosa_laevigata	RLG00000021431
rosa_multiflora	Rmu_ssc0000432.1_g000017
rosa_roxburghii	Rroxscaffold_2G00086860 Rroxscaffold_2G00086870
rosa_rugosa	Rorug02G0505900 Rorug02G0506000 Rorug02G0506100
rosa_samantha	Rh2AG574000 Rh2AG574200 Rh2BG584800 Rh2BG584900 Rh2CG555700 Rh2CG555800 Rh2DG594100 Rh2DG594300
rosa_wichuraiana	Rw2G047480 Rw2G047490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	105, 290
AcoI	YGGCCR	4 cut(s)	39, 130, 174, 265
AcyI	GRCGYC	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	55
AluBI	AGCT	3 cut(s)	24, 159, 296
AluI	AGCT	3 cut(s)	24, 159, 296
AoxI	GGCC	8 cut(s)	39, 46, 63, 84, 130, 174, 219, 265
ApeKI	GCWGC	2 cut(s)	287, 296
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	2 cut(s)	88, 223
BalI	TGGCCA	4 cut(s)	41, 132, 176, 267
BarI	GAAGNNNNNNTAC	4 cut(s)	8, 40, 143, 175
BbsI	GAAGAC	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	274, 283
BccI	CCATC	2 cut(s)	70, 205
BceAI	ACGGC	1 cut(s)	290
BcnI	CCSGG	2 cut(s)	88, 223
BglI	GCCNNNNNGGC	1 cut(s)	38
BisI	GCNGC	2 cut(s)	288, 297
BlsI	GCNGC	2 cut(s)	289, 298
Bme1390I	CCNGG	2 cut(s)	88, 223
BmgT120I	GGNCC	1 cut(s)	46
BmrFI	CCNGG	2 cut(s)	88, 223
BmsI	GCATC	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	203
BpuMI	CCSGG	2 cut(s)	88, 223
Bsa29I	ATCGAT	2 cut(s)	116, 251
BsaHI	GRCGYC	1 cut(s)	303
BsaJI	CCNNGG	4 cut(s)	42, 108, 177, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	325
BseCI	ATCGAT	2 cut(s)	116, 251
BseDI	CCNNGG	4 cut(s)	42, 108, 177, 243
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	68, 203
BseNI	ACTGG	1 cut(s)	325
BseXI	GCAGC	2 cut(s)	274, 283
BshFI	GGCC	8 cut(s)	41, 48, 65, 86, 132, 176, 221, 267
BshVI	ATCGAT	2 cut(s)	116, 251
BsiSI	CCGG	3 cut(s)	33, 87, 222
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	195
BsmI	GAATGC	2 cut(s)	130, 319
BsnI	GGCC	8 cut(s)	41, 48, 65, 86, 132, 176, 221, 267
BspACI	CCGC	2 cut(s)	105, 290
BspANI	GGCC	8 cut(s)	41, 48, 65, 86, 132, 176, 221, 267
BspCNI	CTCAG	2 cut(s)	67, 202
BspDI	ATCGAT	2 cut(s)	116, 251
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	325
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	4 cut(s)	42, 108, 177, 243
BssNI	GRCGYC	1 cut(s)	303
BssT1I	CCWWGG	4 cut(s)	42, 108, 177, 243
Bst4CI	ACNGT	2 cut(s)	102, 237
BstACI	GRCGYC	1 cut(s)	303
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	130, 265
BstDEI	CTNAG	2 cut(s)	54, 189
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 104, 173, 239, 293, 296, 302
BstSCI	CCNGG	2 cut(s)	86, 221
BstV1I	GCAGC	2 cut(s)	274, 283
BstV2I	GAAGAC	1 cut(s)	203
Bsu15I	ATCGAT	2 cut(s)	116, 251
BsuRI	GGCC	8 cut(s)	41, 48, 65, 86, 132, 176, 221, 267
BsuTUI	ATCGAT	2 cut(s)	116, 251
Cac8I	GCNNGC	2 cut(s)	130, 265
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	46
ClaI	ATCGAT	2 cut(s)	116, 251
CseI	GACGC	1 cut(s)	311
CviAII	CATG	3 cut(s)	73, 208, 325
DdeI	CTNAG	2 cut(s)	54, 189
EaeI	YGGCCR	4 cut(s)	39, 130, 174, 265
EciI	GGCGGA	1 cut(s)	94
Eco130I	CCWWGG	4 cut(s)	42, 108, 177, 243
EcoT14I	CCWWGG	4 cut(s)	42, 108, 177, 243
ErhI	CCWWGG	4 cut(s)	42, 108, 177, 243
FaeI	CATG	3 cut(s)	76, 211, 328
FaiI	YATR	3 cut(s)	74, 209, 326
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	3 cut(s)	72, 207, 324
FauI	CCCGC	1 cut(s)	283
Fnu4HI	GCNGC	2 cut(s)	288, 297
Fsp4HI	GCNGC	2 cut(s)	288, 297
GluI	GCNGC	2 cut(s)	288, 297
HaeIII	GGCC	8 cut(s)	41, 48, 65, 86, 132, 176, 221, 267
HapII	CCGG	3 cut(s)	33, 87, 222
HgaI	GACGC	1 cut(s)	311
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	3 cut(s)	76, 211, 328
HinfI	GANTC	3 cut(s)	113, 248, 274
HpaII	CCGG	3 cut(s)	33, 87, 222
Hpy188III	TCNNGA	3 cut(s)	56, 191, 310
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	2 cut(s)	102, 237
HpyCH4V	TGCA	3 cut(s)	98, 233, 256
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 104, 173, 239, 293, 296, 302
HpyF3I	CTNAG	2 cut(s)	54, 189
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	3 cut(s)	76, 211, 328
LmnI	GCTCC	1 cut(s)	293
Lsp1109I	GCAGC	2 cut(s)	274, 283
LweI	GCATC	1 cut(s)	243
MboII	GAAGA	3 cut(s)	28, 163, 208
MlsI	TGGCCA	4 cut(s)	41, 132, 176, 267
MluNI	TGGCCA	4 cut(s)	41, 132, 176, 267
Mox20I	TGGCCA	4 cut(s)	41, 132, 176, 267
MscI	TGGCCA	4 cut(s)	41, 132, 176, 267
MslI	CAYNNNNRTG	2 cut(s)	74, 209
Msp20I	TGGCCA	4 cut(s)	41, 132, 176, 267
MspI	CCGG	3 cut(s)	33, 87, 222
MspR9I	CCNGG	2 cut(s)	88, 223
Mva1269I	GAATGC	2 cut(s)	130, 319
MwoI	GCNNNNNNNGC	7 cut(s)	38, 104, 173, 239, 293, 296, 302
NciI	CCSGG	2 cut(s)	88, 223
NlaIII	CATG	3 cut(s)	76, 211, 328
PctI	GAATGC	2 cut(s)	130, 319
PfeI	GAWTC	3 cut(s)	113, 248, 274
PflFI	GACNNNGTC	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	289, 298
PspPI	GGNCC	1 cut(s)	46
PsyI	GACNNNGTC	1 cut(s)	305
RseI	CAYNNNNRTG	2 cut(s)	74, 209
SatI	GCNGC	2 cut(s)	288, 297
Sau96I	GGNCC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	88, 223
SetI	ASST	3 cut(s)	26, 161, 298
SfaNI	GCATC	1 cut(s)	243
SgrAI	CRCCGGYG	1 cut(s)	32
SmiMI	CAYNNNNRTG	2 cut(s)	74, 209
SsiI	CCGC	2 cut(s)	105, 290
StyD4I	CCNGG	2 cut(s)	86, 221
StyI	CCWWGG	4 cut(s)	42, 108, 177, 243
TaaI	ACNGT	2 cut(s)	102, 237
TaqI	TCGA	2 cut(s)	116, 251
TfiI	GAWTC	3 cut(s)	113, 248, 274
TseI	GCWGC	2 cut(s)	287, 296
Tth111I	GACNNNGTC	1 cut(s)	305
XcmI	CCANNNNNNNNNTGG	2 cut(s)	73, 208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.