Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003106

Physical Location & Seq

Genomic Coordinates Reverse (-)

9025477 .. 9026184

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00086860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGATAACTCGCAGAAGATGAGCTACCACGCTGGTGAGGCCAAGGGCCAAGCTCAGGAGAAGACCAGCACCATGATGGACAAGGCCGGGAATGTTGCACAGTCCGCCAAGGAATCGATGCAGAATGCTGGCCAAGCTATTCAGCAAACGGCTGCGGGAGCTGCTGACGCCGTCAAGAATGATGCATGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

64

Amino Acids

6.63

Weight (kDa)

6.53

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38760 AT5G53820
fragaria_vesca	FvH4_6g45800 FvH4_6g45800 FvH4_6g45802
malus_domestica	MD09G1079600.v1.1 MD17G1070100.v1.1
prunus_persica	Prupe.3G244100_v2.0.a1 Prupe.3G244200_v2.0.a1 Prupe.3G244200_v2.0.a1 Prupe.3G244300_v2.0.a1 Prupe.3G244400_v2.0.a1 Prupe.3G244500_v2.0.a1 Prupe.3G244600_v2.0.a1 Prupe.3G244700_v2.0.a1
pyrus_communis	pycom09g00640 pycom17g07010
rosa_chinensis	RchiOBHm_Chr2g0163981 RchiOBHm_Chr2g0163991 RchiOBHm_Chr2g0164011
rosa_laevigata	RLG00000021431
rosa_multiflora	Rmu_ssc0000432.1_g000017
rosa_roxburghii	Rroxscaffold_2G00086860 Rroxscaffold_2G00086870
rosa_rugosa	Rorug02G0505900 Rorug02G0506000 Rorug02G0506100
rosa_samantha	Rh2AG574000 Rh2AG574200 Rh2BG584800 Rh2BG584900 Rh2CG555700 Rh2CG555800 Rh2DG594100 Rh2DG594300
rosa_wichuraiana	Rw2G047480 Rw2G047490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	105, 155
AcoI	YGGCCR	1 cut(s)	130
AcyI	GRCGYC	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	55
AleI	CACNNNNGTG	1 cut(s)	33
AluBI	AGCT	4 cut(s)	24, 53, 137, 161
AluI	AGCT	4 cut(s)	24, 53, 137, 161
AoxI	GGCC	4 cut(s)	39, 46, 84, 130
ApeKI	GCWGC	2 cut(s)	152, 161
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	47
BalI	TGGCCA	1 cut(s)	132
BarI	GAAGNNNNNNTAC	2 cut(s)	8, 40
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	139, 148
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	2 cut(s)	155, 165
BcnI	CCSGG	1 cut(s)	88
BisI	GCNGC	2 cut(s)	153, 162
BlsI	GCNGC	2 cut(s)	154, 163
Bme1390I	CCNGG	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	88
BmsI	GCATC	2 cut(s)	108, 172
BpiI	GAAGAC	1 cut(s)	68
Bpu10I	CCTNAGC	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	88
Bsa29I	ATCGAT	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	42, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
BseCI	ATCGAT	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	42, 108
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	139, 148
BshFI	GGCC	4 cut(s)	41, 48, 86, 132
BshVI	ATCGAT	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	4 cut(s)	41, 48, 86, 132
BspACI	CCGC	2 cut(s)	105, 155
BspANI	GGCC	4 cut(s)	41, 48, 86, 132
BspCNI	CTCAG	1 cut(s)	67
BspDI	ATCGAT	1 cut(s)	116
BssECI	CCNNGG	2 cut(s)	42, 108
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	2 cut(s)	42, 108
Bst4CI	ACNGT	1 cut(s)	102
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	130, 187
BstDEI	CTNAG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 104, 134, 158, 161, 167
BstNSI	RCATGY	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	139, 148
BstV2I	GAAGAC	1 cut(s)	68
Bsu15I	ATCGAT	1 cut(s)	116
BsuRI	GGCC	4 cut(s)	41, 48, 86, 132
BsuTUI	ATCGAT	1 cut(s)	116
Cac8I	GCNNGC	2 cut(s)	130, 187
Cfr13I	GGNCC	1 cut(s)	46
ClaI	ATCGAT	1 cut(s)	116
CseI	GACGC	1 cut(s)	176
CviAII	CATG	2 cut(s)	73, 186
CviJI	RGCY	9 cut(s)	24, 41, 48, 53, 86, 132, 137, 152, 161
CviKI_1	RGCY	9 cut(s)	24, 41, 48, 53, 86, 132, 137, 152, 161
DdeI	CTNAG	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	130
EciI	GGCGGA	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	42, 108
EcoT14I	CCWWGG	2 cut(s)	42, 108
EcoT22I	ATGCAT	1 cut(s)	187
ErhI	CCWWGG	2 cut(s)	42, 108
FaeI	CATG	2 cut(s)	76, 189
FaiI	YATR	2 cut(s)	74, 187
FatI	CATG	2 cut(s)	72, 185
FauI	CCCGC	1 cut(s)	148
Fnu4HI	GCNGC	2 cut(s)	153, 162
Fsp4HI	GCNGC	2 cut(s)	153, 162
GluI	GCNGC	2 cut(s)	153, 162
HaeIII	GGCC	4 cut(s)	41, 48, 86, 132
HapII	CCGG	1 cut(s)	87
HgaI	GACGC	1 cut(s)	176
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	2 cut(s)	76, 189
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	47
Hpy188III	TCNNGA	2 cut(s)	56, 175
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4V	TGCA	4 cut(s)	98, 121, 185, 189
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 104, 134, 158, 161, 167
HpyF3I	CTNAG	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	76, 189
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	5 cut(s)	18, 41, 79, 100, 114
Lsp1109I	GCAGC	2 cut(s)	139, 148
LweI	GCATC	2 cut(s)	108, 172
MboII	GAAGA	2 cut(s)	28, 73
MlsI	TGGCCA	1 cut(s)	132
MluNI	TGGCCA	1 cut(s)	132
MnlI	CCTC	1 cut(s)	31
Mox20I	TGGCCA	1 cut(s)	132
Mph1103I	ATGCAT	1 cut(s)	187
MscI	TGGCCA	1 cut(s)	132
MslI	CAYNNNNRTG	3 cut(s)	33, 74, 190
Msp20I	TGGCCA	1 cut(s)	132
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	88
Mva1269I	GAATGC	1 cut(s)	130
MwoI	GCNNNNNNNGC	6 cut(s)	38, 104, 134, 158, 161, 167
NciI	CCSGG	1 cut(s)	88
NlaIII	CATG	2 cut(s)	76, 189
NsiI	ATGCAT	1 cut(s)	187
NspI	RCATGY	1 cut(s)	189
OliI	CACNNNNGTG	1 cut(s)	33
PaeI	GCATGC	1 cut(s)	189
PctI	GAATGC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	113
PflFI	GACNNNGTC	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	154, 163
PspPI	GGNCC	1 cut(s)	46
PsyI	GACNNNGTC	1 cut(s)	170
RseI	CAYNNNNRTG	3 cut(s)	33, 74, 190
SatI	GCNGC	2 cut(s)	153, 162
Sau96I	GGNCC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	88
SetI	ASST	4 cut(s)	26, 55, 139, 163
SfaNI	GCATC	2 cut(s)	108, 172
SmiMI	CAYNNNNRTG	3 cut(s)	33, 74, 190
SphI	GCATGC	1 cut(s)	189
SsiI	CCGC	2 cut(s)	105, 155
StyD4I	CCNGG	1 cut(s)	86
StyI	CCWWGG	2 cut(s)	42, 108
TaaI	ACNGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	113
TseI	GCWGC	2 cut(s)	152, 161
Tth111I	GACNNNGTC	1 cut(s)	170
XceI	RCATGY	1 cut(s)	189
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.