Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003106

Physical Location & Seq

Genomic Coordinates Forward (+)

35081747 .. 35082497

Gene Structure 751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45802.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGCTGACAACTCCCAGAAGATGAGCTACCACGCTGGTGAGGCCAAGGGCCAAGCTCAGGAGAAGGCTAACACAATGATGGACAAGGCTAGCAATGCTGCACAGTCCGCCAAGGAATCGGTGCAGAATGCAGGAGGACAGATGCGCGCAAAGGCAGAGGGAGCTGCTGAATCTGTCAAGGATGCCACTGGCATGAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

68

Amino Acids

6.95

Weight (kDa)

8.03

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38760 AT5G53820
fragaria_vesca	FvH4_6g45800 FvH4_6g45800 FvH4_6g45802
malus_domestica	MD09G1079600.v1.1 MD17G1070100.v1.1
prunus_persica	Prupe.3G244100_v2.0.a1 Prupe.3G244200_v2.0.a1 Prupe.3G244200_v2.0.a1 Prupe.3G244300_v2.0.a1 Prupe.3G244400_v2.0.a1 Prupe.3G244500_v2.0.a1 Prupe.3G244600_v2.0.a1 Prupe.3G244700_v2.0.a1
pyrus_communis	pycom09g00640 pycom17g07010
rosa_chinensis	RchiOBHm_Chr2g0163981 RchiOBHm_Chr2g0163991 RchiOBHm_Chr2g0164011
rosa_laevigata	RLG00000021431
rosa_multiflora	Rmu_ssc0000432.1_g000017
rosa_roxburghii	Rroxscaffold_2G00086860 Rroxscaffold_2G00086870
rosa_rugosa	Rorug02G0505900 Rorug02G0506000 Rorug02G0506100
rosa_samantha	Rh2AG574000 Rh2AG574200 Rh2BG584800 Rh2BG584900 Rh2CG555700 Rh2CG555800 Rh2DG594100 Rh2DG594300
rosa_wichuraiana	Rw2G047480 Rw2G047490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	147
AciI	CCGC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	58
AleI	CACNNNNGTG	1 cut(s)	36
AluBI	AGCT	3 cut(s)	27, 56, 164
AluI	AGCT	3 cut(s)	27, 56, 164
AoxI	GGCC	2 cut(s)	42, 49
ApeKI	GCWGC	2 cut(s)	98, 164
AspLEI	GCGC	2 cut(s)	147, 149
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	50
AsuNHI	GCTAGC	1 cut(s)	89
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BbvI	GCAGC	2 cut(s)	85, 151
BccI	CCATC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	90
BisI	GCNGC	2 cut(s)	99, 165
BlsI	GCNGC	2 cut(s)	100, 166
BmgT120I	GGNCC	1 cut(s)	49
BmsI	GCATC	2 cut(s)	132, 172
BmtI	GCTAGC	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	45, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	100
BseDI	CCNNGG	2 cut(s)	45, 111
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	193
BsePI	GCGCGC	1 cut(s)	145
BseXI	GCAGC	2 cut(s)	85, 151
BsgI	GTGCAG	2 cut(s)	84, 143
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	44, 51
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	44, 51
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	2 cut(s)	44, 51
BspCNI	CTCAG	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	147
BspOI	GCTAGC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	45, 111
BssHII	GCGCGC	1 cut(s)	145
BssT1I	CCWWGG	2 cut(s)	45, 111
Bst4CI	ACNGT	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	91, 147
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	2 cut(s)	147, 149
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 95, 107, 161
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	85, 151
BsuRI	GGCC	2 cut(s)	44, 51
BtsCI	GGATG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	2 cut(s)	91, 147
CfoI	GCGC	2 cut(s)	147, 149
Cfr13I	GGNCC	1 cut(s)	49
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	8 cut(s)	5, 27, 44, 51, 56, 68, 89, 164
CviKI_1	RGCY	8 cut(s)	5, 27, 44, 51, 56, 68, 89, 164
DdeI	CTNAG	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	45, 111
EcoT14I	CCWWGG	2 cut(s)	45, 111
ErhI	CCWWGG	2 cut(s)	45, 111
FaeI	CATG	1 cut(s)	196
FaiI	YATR	1 cut(s)	194
FatI	CATG	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	99, 165
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	2 cut(s)	99, 165
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	2 cut(s)	146, 148
GluI	GCNGC	2 cut(s)	99, 165
HaeIII	GGCC	2 cut(s)	44, 51
HhaI	GCGC	2 cut(s)	147, 149
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	2 cut(s)	145, 147
HinP1I	GCGC	2 cut(s)	145, 147
HinfI	GANTC	2 cut(s)	116, 170
HphI	GGTGA	1 cut(s)	50
Hpy188III	TCNNGA	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4V	TGCA	3 cut(s)	101, 124, 131
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 95, 107, 161
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	2 cut(s)	145, 147
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	5 cut(s)	21, 29, 44, 117, 174
Lsp1109I	GCAGC	2 cut(s)	85, 151
LweI	GCATC	2 cut(s)	132, 172
MaeI	CTAG	1 cut(s)	90
MboII	GAAGA	1 cut(s)	31
MnlI	CCTC	3 cut(s)	34, 128, 151
MslI	CAYNNNNRTG	3 cut(s)	36, 77, 191
Mva1269I	GAATGC	1 cut(s)	133
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	4 cut(s)	41, 95, 107, 161
NheI	GCTAGC	1 cut(s)	89
NlaIII	CATG	1 cut(s)	196
OliI	CACNNNNGTG	1 cut(s)	36
PauI	GCGCGC	1 cut(s)	145
PctI	GAATGC	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	116, 170
PkrI	GCNGC	2 cut(s)	100, 166
PspPI	GGNCC	1 cut(s)	49
PteI	GCGCGC	1 cut(s)	145
RseI	CAYNNNNRTG	3 cut(s)	36, 77, 191
SatI	GCNGC	2 cut(s)	99, 165
Sau96I	GGNCC	1 cut(s)	49
SetI	ASST	3 cut(s)	29, 58, 166
SfaNI	GCATC	2 cut(s)	132, 172
SmiMI	CAYNNNNRTG	3 cut(s)	36, 77, 191
SsiI	CCGC	1 cut(s)	108
SspMI	CTAG	1 cut(s)	90
StyI	CCWWGG	2 cut(s)	45, 111
TaaI	ACNGT	1 cut(s)	105
TfiI	GAWTC	2 cut(s)	116, 170
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	2 cut(s)	98, 164
TspRI	CASTG	1 cut(s)	193
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.