AT5G53820

Stress-induced protein KIN2-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
21853348 .. 21854117
770 bp
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UTR
Exon/CDS
Intron
AT5G53820.1

Sequence Viewer

Length: 204 bp
ATGTCTAACAACAGTCAGAGCATGAGCTTCAACGCTGGCCAAGCTAAAGGCCAAACTCAGGAGAAGGCAAGCAACTTGATAGACAAGGCCTCCAATGCTGCCCAATCTGCTAAGGAATCTATCCAAGAGGGTGGACAGCAGCTGAAGCAGAAGGCACAAGGTGCGAGTGAGACCATTAAGGAAAAGACCGGCATCAGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.03

Weight (kDa)

9.46

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 164
AdeI CACNNNGTG 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 1 cut(s) 31
AluBI AGCT 3 cut(s) 27, 44, 142
AluI AGCT 3 cut(s) 27, 44, 142
Alw26I GTCTC 1 cut(s) 164
AlwNI CAGNNNCTG 1 cut(s) 142
AoxI GGCC 3 cut(s) 37, 49, 87
ApeKI GCWGC 2 cut(s) 98, 139
BalI TGGCCA 1 cut(s) 39
BbvI GCAGC 2 cut(s) 85, 151
BcoDI GTCTC 1 cut(s) 164
BisI GCNGC 2 cut(s) 99, 140
BlsI GCNGC 2 cut(s) 100, 141
Bpu10I CCTNAGC 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse118I RCCGGY 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 85, 151
BshFI GGCC 3 cut(s) 39, 51, 89
BsiSI CCGG 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 3 cut(s) 39, 51, 89
Bso31I GGTCTC 1 cut(s) 164
BspANI GGCC 3 cut(s) 39, 51, 89
BspCNI CTCAG 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 14
BstAPI GCANNNNNTGC 1 cut(s) 161
BstC8I GCNNGC 2 cut(s) 37, 70
BstDEI CTNAG 2 cut(s) 57, 111
BstMAI GTCTC 1 cut(s) 164
BstMWI GCNNNNNNNGC 5 cut(s) 41, 95, 107, 145, 161
BstV1I GCAGC 2 cut(s) 85, 151
BstXI CCANNNNNNTGG 1 cut(s) 131
BsuRI GGCC 3 cut(s) 39, 51, 89
Cac8I GCNNGC 2 cut(s) 37, 70
CaiI CAGNNNCTG 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 188
CviAII CATG 1 cut(s) 22
CviJI RGCY 6 cut(s) 27, 39, 44, 51, 89, 142
CviKI_1 RGCY 6 cut(s) 27, 39, 44, 51, 89, 142
DdeI CTNAG 2 cut(s) 57, 111
DraIII CACNNNGTG 1 cut(s) 161
EaeI YGGCCR 1 cut(s) 37
Eco147I AGGCCT 1 cut(s) 89
Eco31I GGTCTC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 164
FaeI CATG 1 cut(s) 25
FaiI YATR 1 cut(s) 23
FatI CATG 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 99, 140
Fsp4HI GCNGC 2 cut(s) 99, 140
GluI GCNGC 2 cut(s) 99, 140
HaeIII GGCC 3 cut(s) 39, 51, 89
HapII CCGG 1 cut(s) 189
Hin1II CATG 1 cut(s) 25
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 189
Hpy166II GTNNAC 1 cut(s) 134
Hpy188I TCNGA 1 cut(s) 18
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 134
HpyAV CCTTC 2 cut(s) 58, 145
HpyCH4III ACNGT 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 95, 107, 145, 161
HpyF3I CTNAG 2 cut(s) 57, 111
Hsp92II CATG 1 cut(s) 25
LpnPI CCDG 2 cut(s) 21, 44
Lsp1109I GCAGC 2 cut(s) 85, 151
MlsI TGGCCA 1 cut(s) 39
MluNI TGGCCA 1 cut(s) 39
MnlI CCTC 2 cut(s) 100, 121
Mox20I TGGCCA 1 cut(s) 39
MscI TGGCCA 1 cut(s) 39
MseI TTAA 1 cut(s) 177
Msp20I TGGCCA 1 cut(s) 39
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 1 cut(s) 189
MwoI GCNNNNNNNGC 5 cut(s) 41, 95, 107, 145, 161
NlaIII CATG 1 cut(s) 25
PceI AGGCCT 1 cut(s) 89
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 2 cut(s) 100, 141
PstNI CAGNNNCTG 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 142
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 2 cut(s) 99, 140
SetI ASST 4 cut(s) 29, 46, 144, 163
SseBI AGGCCT 1 cut(s) 89
StuI AGGCCT 1 cut(s) 89
TaaI ACNGT 1 cut(s) 14
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TseI GCWGC 2 cut(s) 98, 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.