Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003106

Physical Location & Seq

Genomic Coordinates Forward (+)

35073973 .. 35076556

Gene Structure 2584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45800.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGATAACTCACAGAAGGTAAGCTACCAAGCTGGAGAGGCCAAGGGCCAGACTCAGGAGAAGGCTAGCACCATGATGGACAAGGCAGGAAATGCTGTACAGTCTGCCAAGGAGTCGTTGCCGAATGCTGGCCCAACGAACTCACAGAAGGCAAGCTACCAGACTGGAGAGGCCAAGGGCCAAACTCAGGAGAAGGCCAACACCATGATGGGCAAGGCAGGAAATGCTGCACAGTCTGCCAAGGAGACGATGCTGAATGCTGGCCAAACGATTCAGCAAAAGGCTGCAGGAGCTGCTGATGCTGTCAAGAATGCTACCGGCATGAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

11.3

Weight (kDa)

9.4

Isoelectric Point (pI)

18.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38760 AT5G53820
fragaria_vesca	FvH4_6g45800 FvH4_6g45800 FvH4_6g45802
malus_domestica	MD09G1079600.v1.1 MD17G1070100.v1.1
prunus_persica	Prupe.3G244100_v2.0.a1 Prupe.3G244200_v2.0.a1 Prupe.3G244200_v2.0.a1 Prupe.3G244300_v2.0.a1 Prupe.3G244400_v2.0.a1 Prupe.3G244500_v2.0.a1 Prupe.3G244600_v2.0.a1 Prupe.3G244700_v2.0.a1
pyrus_communis	pycom09g00640 pycom17g07010
rosa_chinensis	RchiOBHm_Chr2g0163981 RchiOBHm_Chr2g0163991 RchiOBHm_Chr2g0164011
rosa_laevigata	RLG00000021431
rosa_multiflora	Rmu_ssc0000432.1_g000017
rosa_roxburghii	Rroxscaffold_2G00086860 Rroxscaffold_2G00086870
rosa_rugosa	Rorug02G0505900 Rorug02G0506000 Rorug02G0506100
rosa_samantha	Rh2AG574000 Rh2AG574200 Rh2BG584800 Rh2BG584900 Rh2CG555700 Rh2CG555800 Rh2DG594100 Rh2DG594300
rosa_wichuraiana	Rw2G047480 Rw2G047490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	262
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	3 cut(s)	55, 128, 187
AluBI	AGCT	4 cut(s)	24, 32, 156, 293
AluI	AGCT	4 cut(s)	24, 32, 156, 293
Alw26I	GTCTC	1 cut(s)	239
AlwNI	CAGNNNCTG	1 cut(s)	293
AoxI	GGCC	7 cut(s)	39, 46, 130, 171, 178, 195, 262
ApeKI	GCWGC	3 cut(s)	227, 284, 293
AspS9I	GGNCC	3 cut(s)	46, 131, 178
AsuNHI	GCTAGC	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	264
BarI	GAAGNNNNNNTAC	4 cut(s)	8, 40, 140, 172
BbvI	GCAGC	3 cut(s)	214, 271, 280
BccI	CCATC	2 cut(s)	70, 202
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	285
BisI	GCNGC	3 cut(s)	228, 285, 294
BlsI	GCNGC	3 cut(s)	229, 286, 295
BmgT120I	GGNCC	3 cut(s)	46, 131, 178
BmsI	GCATC	2 cut(s)	240, 289
BmtI	GCTAGC	1 cut(s)	69
BpmI	CTGGAG	2 cut(s)	54, 186
BsaJI	CCNNGG	4 cut(s)	42, 108, 174, 240
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 128, 187
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	1 cut(s)	169
BseDI	CCNNGG	4 cut(s)	42, 108, 174, 240
BseLI	CCNNNNNNNGG	3 cut(s)	55, 128, 187
BseMII	CTCAG	2 cut(s)	68, 200
BseNI	ACTGG	1 cut(s)	169
BseXI	GCAGC	3 cut(s)	214, 271, 280
BsgI	GTGCAG	1 cut(s)	213
BshFI	GGCC	7 cut(s)	41, 48, 132, 173, 180, 197, 264
BsiSI	CCGG	1 cut(s)	318
BslI	CCNNNNNNNGG	3 cut(s)	55, 128, 187
BsmAI	GTCTC	1 cut(s)	239
BsmBI	CGTCTC	1 cut(s)	239
BsmI	GAATGC	3 cut(s)	130, 262, 316
BsnI	GGCC	7 cut(s)	41, 48, 132, 173, 180, 197, 264
Bsp1407I	TGTACA	1 cut(s)	97
BspANI	GGCC	7 cut(s)	41, 48, 132, 173, 180, 197, 264
BspCNI	CTCAG	2 cut(s)	67, 199
BspMAI	CTGCAG	1 cut(s)	289
BspOI	GCTAGC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	317
BsrGI	TGTACA	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	4 cut(s)	42, 108, 174, 240
BssT1I	CCWWGG	4 cut(s)	42, 108, 174, 240
Bst4CI	ACNGT	2 cut(s)	102, 234
BstAPI	GCANNNNNTGC	4 cut(s)	92, 224, 236, 293
BstAUI	TGTACA	1 cut(s)	97
BstC8I	GCNNGC	4 cut(s)	67, 130, 154, 262
BstDEI	CTNAG	2 cut(s)	54, 186
BstMAI	GTCTC	1 cut(s)	239
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 92, 224, 236, 290, 293, 299
BstSFI	CTRYAG	1 cut(s)	285
BstV1I	GCAGC	3 cut(s)	214, 271, 280
BsuRI	GGCC	7 cut(s)	41, 48, 132, 173, 180, 197, 264
Cac8I	GCNNGC	4 cut(s)	67, 130, 154, 262
CaiI	CAGNNNCTG	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	3 cut(s)	46, 131, 178
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	3 cut(s)	73, 205, 322
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	2 cut(s)	54, 186
EaeI	YGGCCR	1 cut(s)	262
Eco130I	CCWWGG	4 cut(s)	42, 108, 174, 240
EcoT14I	CCWWGG	4 cut(s)	42, 108, 174, 240
ErhI	CCWWGG	4 cut(s)	42, 108, 174, 240
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	3 cut(s)	76, 208, 325
FaiI	YATR	3 cut(s)	74, 206, 323
FatI	CATG	3 cut(s)	72, 204, 321
Fnu4HI	GCNGC	3 cut(s)	228, 285, 294
Fsp4HI	GCNGC	3 cut(s)	228, 285, 294
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	3 cut(s)	228, 285, 294
GsuI	CTGGAG	2 cut(s)	54, 186
HaeIII	GGCC	7 cut(s)	41, 48, 132, 173, 180, 197, 264
HapII	CCGG	1 cut(s)	318
Hin1II	CATG	3 cut(s)	76, 208, 325
HinfI	GANTC	3 cut(s)	52, 113, 271
HpaII	CCGG	1 cut(s)	318
Hpy188III	TCNNGA	3 cut(s)	56, 188, 307
HpyAV	CCTTC	4 cut(s)	10, 55, 142, 187
HpyCH4III	ACNGT	2 cut(s)	102, 234
HpyCH4V	TGCA	2 cut(s)	230, 287
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 92, 224, 236, 290, 293, 299
HpyF3I	CTNAG	2 cut(s)	54, 186
Hsp92II	CATG	3 cut(s)	76, 208, 325
LmnI	GCTCC	1 cut(s)	290
Lsp1109I	GCAGC	3 cut(s)	214, 271, 280
LweI	GCATC	2 cut(s)	240, 289
MaeI	CTAG	1 cut(s)	66
MlsI	TGGCCA	1 cut(s)	264
MluNI	TGGCCA	1 cut(s)	264
MlyI	GAGTC	2 cut(s)	46, 122
MnlI	CCTC	2 cut(s)	31, 163
Mox20I	TGGCCA	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	264
MslI	CAYNNNNRTG	2 cut(s)	74, 206
Msp20I	TGGCCA	1 cut(s)	264
MspI	CCGG	1 cut(s)	318
Mva1269I	GAATGC	3 cut(s)	130, 262, 316
MwoI	GCNNNNNNNGC	7 cut(s)	38, 92, 224, 236, 290, 293, 299
NheI	GCTAGC	1 cut(s)	65
NlaIII	CATG	3 cut(s)	76, 208, 325
PctI	GAATGC	3 cut(s)	130, 262, 316
PfeI	GAWTC	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	229, 286, 295
PleI	GAGTC	2 cut(s)	46, 121
PpsI	GAGTC	2 cut(s)	46, 121
PspPI	GGNCC	3 cut(s)	46, 131, 178
PstI	CTGCAG	1 cut(s)	289
PstNI	CAGNNNCTG	1 cut(s)	293
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
RseI	CAYNNNNRTG	2 cut(s)	74, 206
SatI	GCNGC	3 cut(s)	228, 285, 294
Sau96I	GGNCC	3 cut(s)	46, 131, 178
SchI	GAGTC	2 cut(s)	46, 122
SetI	ASST	5 cut(s)	21, 26, 34, 158, 295
SfaNI	GCATC	2 cut(s)	240, 289
SfcI	CTRYAG	1 cut(s)	285
SmiMI	CAYNNNNRTG	2 cut(s)	74, 206
SspMI	CTAG	1 cut(s)	66
StyI	CCWWGG	4 cut(s)	42, 108, 174, 240
TaaI	ACNGT	2 cut(s)	102, 234
TatI	WGTACW	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	271
TseI	GCWGC	3 cut(s)	227, 284, 293
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.