Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003106

Physical Location & Seq

Genomic Coordinates Forward (+)

74753578 .. 74754110

Gene Structure 533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G047480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGATAAGATGAGCTACAACGCCGGTGTGGCCAAGGGCCAAACTCAGGAGAAGGCCAGCACCATGATGGACAAGGCCGGGAATGCCGCACAGTCCGCCAAGGAATCGGTGCAGAATGCTGCTGCTGACGCCGTCAAGAATGCTACTGGCATGAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

53

Amino Acids

5.45

Weight (kDa)

9.16

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38760 AT5G53820
fragaria_vesca	FvH4_6g45800 FvH4_6g45800 FvH4_6g45802
malus_domestica	MD09G1079600.v1.1 MD17G1070100.v1.1
prunus_persica	Prupe.3G244100_v2.0.a1 Prupe.3G244200_v2.0.a1 Prupe.3G244200_v2.0.a1 Prupe.3G244300_v2.0.a1 Prupe.3G244400_v2.0.a1 Prupe.3G244500_v2.0.a1 Prupe.3G244600_v2.0.a1 Prupe.3G244700_v2.0.a1
pyrus_communis	pycom09g00640 pycom17g07010
rosa_chinensis	RchiOBHm_Chr2g0163981 RchiOBHm_Chr2g0163991 RchiOBHm_Chr2g0164011
rosa_laevigata	RLG00000021431
rosa_multiflora	Rmu_ssc0000432.1_g000017
rosa_roxburghii	Rroxscaffold_2G00086860 Rroxscaffold_2G00086870
rosa_rugosa	Rorug02G0505900 Rorug02G0506000 Rorug02G0506100
rosa_samantha	Rh2AG574000 Rh2AG574200 Rh2BG584800 Rh2BG584900 Rh2CG555700 Rh2CG555800 Rh2DG594100 Rh2DG594300
rosa_wichuraiana	Rw2G047480 Rw2G047490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	87, 96
AcoI	YGGCCR	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	46
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
AoxI	GGCC	4 cut(s)	30, 37, 54, 75
ApeKI	GCWGC	2 cut(s)	119, 122
AspS9I	GGNCC	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	106, 109
BccI	CCATC	1 cut(s)	61
BceAI	ACGGC	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	79
BglI	GCCNNNNNGGC	1 cut(s)	29
BisI	GCNGC	3 cut(s)	87, 120, 123
BlsI	GCNGC	3 cut(s)	88, 121, 124
Bme1390I	CCNGG	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	79
BpuMI	CCSGG	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	33, 99
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	151
BseDI	CCNNGG	2 cut(s)	33, 99
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	106, 109
BsgI	GTGCAG	1 cut(s)	131
BshFI	GGCC	4 cut(s)	32, 39, 56, 77
BsiSI	CCGG	2 cut(s)	24, 78
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmI	GAATGC	3 cut(s)	88, 121, 145
BsnI	GGCC	4 cut(s)	32, 39, 56, 77
BspACI	CCGC	2 cut(s)	87, 96
BspANI	GGCC	4 cut(s)	32, 39, 56, 77
BspCNI	CTCAG	1 cut(s)	58
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	2 cut(s)	33, 99
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	2 cut(s)	33, 99
Bst4CI	ACNGT	1 cut(s)	93
BstACI	GRCGYC	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 83, 95, 128
BstSCI	CCNGG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	106, 109
BsuRI	GGCC	4 cut(s)	32, 39, 56, 77
Cac8I	GCNNGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	37
CseI	GACGC	1 cut(s)	137
CviAII	CATG	2 cut(s)	64, 151
CviJI	RGCY	5 cut(s)	15, 32, 39, 56, 77
CviKI_1	RGCY	5 cut(s)	15, 32, 39, 56, 77
DdeI	CTNAG	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	85
Eco130I	CCWWGG	2 cut(s)	33, 99
EcoT14I	CCWWGG	2 cut(s)	33, 99
ErhI	CCWWGG	2 cut(s)	33, 99
FaeI	CATG	2 cut(s)	67, 154
FaiI	YATR	2 cut(s)	65, 152
FatI	CATG	2 cut(s)	63, 150
Fnu4HI	GCNGC	3 cut(s)	87, 120, 123
Fsp4HI	GCNGC	3 cut(s)	87, 120, 123
GluI	GCNGC	3 cut(s)	87, 120, 123
HaeIII	GGCC	4 cut(s)	32, 39, 56, 77
HapII	CCGG	2 cut(s)	24, 78
HgaI	GACGC	1 cut(s)	137
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	67, 154
HinfI	GANTC	1 cut(s)	104
HpaII	CCGG	2 cut(s)	24, 78
Hpy188III	TCNNGA	2 cut(s)	47, 136
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	112
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 83, 95, 128
HpyF3I	CTNAG	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	67, 154
LpnPI	CCDG	5 cut(s)	32, 37, 70, 91, 132
Lsp1109I	GCAGC	2 cut(s)	106, 109
MlsI	TGGCCA	1 cut(s)	32
MluNI	TGGCCA	1 cut(s)	32
Mox20I	TGGCCA	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	32
MspI	CCGG	2 cut(s)	24, 78
MspR9I	CCNGG	1 cut(s)	79
Mva1269I	GAATGC	3 cut(s)	88, 121, 145
MwoI	GCNNNNNNNGC	4 cut(s)	29, 83, 95, 128
NciI	CCSGG	1 cut(s)	79
NlaIII	CATG	2 cut(s)	67, 154
PctI	GAATGC	3 cut(s)	88, 121, 145
PfeI	GAWTC	1 cut(s)	104
PflFI	GACNNNGTC	1 cut(s)	131
PkrI	GCNGC	3 cut(s)	88, 121, 124
PspPI	GGNCC	1 cut(s)	37
PsyI	GACNNNGTC	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	65
SatI	GCNGC	3 cut(s)	87, 120, 123
Sau96I	GGNCC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	79
SetI	ASST	1 cut(s)	17
SgrAI	CRCCGGYG	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	65
SsiI	CCGC	2 cut(s)	87, 96
StyD4I	CCNGG	1 cut(s)	77
StyI	CCWWGG	2 cut(s)	33, 99
TaaI	ACNGT	1 cut(s)	93
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	104
TseI	GCWGC	2 cut(s)	119, 122
Tth111I	GACNNNGTC	1 cut(s)	131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.