AT5G40290

Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002219
Physical Location & Seq
Reverse (-)
16105259 .. 16108501
3243 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40290.1

Sequence Viewer

Length: 1347 bp
ATGGGAGAGTATTGCAATGAAGACCTGAGTTGTTTTCCGGCGAATGAACTCCGGTTCAGCAAACATGTCCACGACAACGTTCATGGAAACATCTATCTTGATCCTCTTTGTTTAAAATTCATTGACACTGAGCAGTTCCAAAGGCTTCGTGAACTAAAGCAACTTGGAGTGACAAACATGGTATATCCAGGAGCTGTACATTCTAGATTTGAGCACTCTCTAGGTGTGTATTGGCTTGCAGGTGAAACTGTTCAGAGGCTCAAAACTTTCCAGGGAATGGAGCTTGGTATTGACAATCATGATCTTCAGACTGTGAGACTTGCTGGACTTCTCCATGACATTGGCCATGGGCCTTTCAGTCATATGTTTGAGCGTGAGTTCCTCCCAAAGGTCATAAGTGGCTGTCAGTGGTCTCATGAGTTAATGTCTATAAACATGATTGACTATATAGTCGATACACATCACATAGATGTTGATGCAAAAATGCTAAAAAGAGTCAAAGACATGATACTAGCTAGTACTGAAGTTTCAGAGCTGAAAGGCAATGCAGAGAAGCGTTTCTTGTATGACATTGTTGCTAATGGTCGAAATGGGATTGATGTGGATAAGTTTGACTACATTGTCCGAGACTCTCGAGCTTGTGGACTAGGGTGCAACTTTCAGTTTCAAAGACTAACAGAACCAATGAGAGTCATAGACAATGAAATCTGCTACCCCGCCAAGGAATATCGTACTGTCCACAAGTTGTTTGCAACTCGAGCTGATCTTTGTGGAACCGTCTACATGCATCCCAAAAAAATGGCCATAGAGCTTATGATAGTAGATGCAATGGTCAAAGCCAACAATGTCTTGGAGATTTCTTCTATGATTAATGATCCTTCTCAATACTGGAAGTTAGACGACACAATCCTCAAAACGATTGAAAGATCTCCAGATCCAGAACTTGCAGAAGCTAAAGAGCTGATACTCCGCCTTAGCAGAAGGCACTTGTACCAATTCTGTAACGAGTATGCGGTACCAAAGGACAAAATCGATCATTTCAAACCTATCACTCCTGAAGATATCATCTGTTTCTCAGAAGAAGATATAGCTGTTACAAACGTCAAGATTGATTTAGCTCGTGGGAGAGAAAATCCTCTTGAATGCATCAACTTCTATAAGGATTATAATAGTGCAGAGAAGTTTGTGATACCTGAGGACAGAGTTAGCCACTTGTTACCAACAACATATCAAGAAATGATAGTGAGAGTATATGCCAAAAAACCAGAATTGGTAGAAGCAGTTTCTGAGGCATTTGAAAACTTCCAAATGAGAACGTATGGAATCAAAGCTCAAGTACTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HD

Protein Analysis

448

Amino Acids

51.86

Weight (kDa)

5.68

Isoelectric Point (pI)

33.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HD PF01966 69 - 161 1e-10 HD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1167
AarI CACCTGC 1 cut(s) 230
AasI GACNNNNNNGTC 2 cut(s) 449, 620
Acc36I ACCTGC 1 cut(s) 230
Acc65I GGTACC 1 cut(s) 1015
AccB1I GGYRCC 1 cut(s) 1015
AccB7I CCANNNNNTGG 1 cut(s) 277
AccI GTMKAC 1 cut(s) 780
AciI CCGC 3 cut(s) 717, 970, 1013
AclI AACGTT 1 cut(s) 78
AclWI GGATC 3 cut(s) 95, 869, 929
AcoI YGGCCR 2 cut(s) 343, 801
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 3 cut(s) 290, 543, 1077
AfaI GTAC 6 cut(s) 198, 520, 733, 992, 1017, 1338
AfiI CCNNNNNNNGG 3 cut(s) 277, 388, 721
AflIII ACRYGT 1 cut(s) 64
AgsI TTSAA 5 cut(s) 668, 923, 1042, 1142, 1298
AjnI CCWGG 2 cut(s) 187, 270
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 3 cut(s) 310, 417, 621
AlwI GGATC 3 cut(s) 95, 869, 929
AlwNI CAGNNNCTG 2 cut(s) 194, 1286
Ama87I CYCGRG 2 cut(s) 633, 756
AoxI GGCC 3 cut(s) 343, 350, 801
ApoI RAATTY 1 cut(s) 116
AseI ATTAAT 1 cut(s) 870
Asp700I GAANNNNTTC 2 cut(s) 249, 557
Asp718I GGTACC 1 cut(s) 1015
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 254
AvaI CYCGRG 2 cut(s) 633, 756
AxyI CCTNAGG 1 cut(s) 1194
BalI TGGCCA 2 cut(s) 345, 803
BanI GGYRCC 1 cut(s) 1015
BauI CACGAG 1 cut(s) 1119
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 216
BciT130I CCWGG 2 cut(s) 189, 272
BcoDI GTCTC 3 cut(s) 310, 417, 621
BfaI CTAG 5 cut(s) 204, 221, 512, 516, 647
BfuAI ACCTGC 1 cut(s) 230
BglII AGATCT 1 cut(s) 926
BmcAI AGTACT 2 cut(s) 520, 1338
Bme1390I CCNGG 2 cut(s) 189, 272
BmeT110I CYCGRG 2 cut(s) 633, 756
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 2 cut(s) 775, 1017
BmrFI CCNGG 2 cut(s) 189, 272
BmsI GCATC 4 cut(s) 466, 796, 814, 1155
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 915
Bpu10I CCTNAGC 1 cut(s) 974
BpuEI CTTGAG 1 cut(s) 1317
Bsa29I ATCGAT 1 cut(s) 1032
BsaBI GATNNNNATC 1 cut(s) 459
BsaI GGTCTC 1 cut(s) 417
BsaJI CCNNGG 3 cut(s) 271, 346, 720
BsaWI WCCGGW 1 cut(s) 51
Bsc4I CCNNNNNNNGG 3 cut(s) 277, 388, 721
Bse1I ACTGG 1 cut(s) 893
Bse21I CCTNAGG 1 cut(s) 1194
Bse3DI GCAATG 3 cut(s) 22, 550, 834
Bse8I GATNNNNATC 1 cut(s) 459
BseBI CCWGG 2 cut(s) 189, 272
BseCI ATCGAT 1 cut(s) 1032
BseDI CCNNGG 3 cut(s) 271, 346, 720
BseGI GGATG 1 cut(s) 787
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 3 cut(s) 277, 388, 721
BseMI GCAATG 3 cut(s) 22, 550, 834
BseMII CTCAG 5 cut(s) 17, 120, 1089, 1185, 1278
BseNI ACTGG 1 cut(s) 893
BsgI GTGCAG 1 cut(s) 1194
BshFI GGCC 3 cut(s) 345, 352, 803
BshNI GGYRCC 1 cut(s) 1015
BshVI ATCGAT 1 cut(s) 1032
BsiHKAI GWGCWC 1 cut(s) 216
BsiHKCI CYCGRG 2 cut(s) 633, 756
BsiSI CCGG 2 cut(s) 38, 52
BslI CCNNNNNNNGG 3 cut(s) 277, 388, 721
BsmAI GTCTC 3 cut(s) 310, 417, 621
BsmI GAATGC 1 cut(s) 1148
BsnI GGCC 3 cut(s) 345, 352, 803
Bso31I GGTCTC 1 cut(s) 417
BsoBI CYCGRG 2 cut(s) 633, 756
Bsp1286I GDGCHC 1 cut(s) 216
Bsp1407I TGTACA 1 cut(s) 196
Bsp143I GATC 7 cut(s) 100, 301, 763, 874, 926, 934, 1033
Bsp19I CCATGG 1 cut(s) 346
BspACI CCGC 3 cut(s) 717, 970, 1013
BspANI GGCC 3 cut(s) 345, 352, 803
BspCNI CTCAG 5 cut(s) 18, 121, 1088, 1186, 1279
BspDI ATCGAT 1 cut(s) 1032
BspHI TCATGA 2 cut(s) 298, 415
BspLI GGNNCC 2 cut(s) 775, 1017
BspMI ACCTGC 1 cut(s) 230
BspPI GGATC 3 cut(s) 95, 869, 929
BspT107I GGYRCC 1 cut(s) 1015
BspTNI GGTCTC 1 cut(s) 417
BsrDI GCAATG 3 cut(s) 22, 550, 834
BsrGI TGTACA 1 cut(s) 196
BsrI ACTGG 1 cut(s) 893
BssECI CCNNGG 3 cut(s) 271, 346, 720
BssMI GATC 7 cut(s) 100, 301, 763, 874, 926, 934, 1033
BssSI CACGAG 1 cut(s) 1119
BssT1I CCWWGG 2 cut(s) 346, 720
Bst2BI CACGAG 1 cut(s) 1119
Bst2UI CCWGG 2 cut(s) 189, 272
Bst4CI ACNGT 4 cut(s) 250, 313, 736, 778
BstAUI TGTACA 1 cut(s) 196
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 6 cut(s) 26, 129, 974, 1075, 1194, 1287
BstDSI CCRYGG 1 cut(s) 346
BstENI CCTNNNNNAGG 1 cut(s) 386
BstF5I GGATG 1 cut(s) 787
BstKTI GATC 7 cut(s) 103, 304, 766, 877, 929, 937, 1036
BstMAI GTCTC 3 cut(s) 310, 417, 621
BstMBI GATC 7 cut(s) 100, 301, 763, 874, 926, 934, 1033
BstMWI GCNNNNNNNGC 1 cut(s) 758
BstNI CCWGG 2 cut(s) 189, 272
BstNSI RCATGY 2 cut(s) 68, 787
BstSCI CCNGG 2 cut(s) 187, 270
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 2 cut(s) 926, 934
BstXI CCANNNNNNTGG 2 cut(s) 341, 799
BstYI RGATCY 2 cut(s) 926, 934
Bsu15I ATCGAT 1 cut(s) 1032
Bsu36I CCTNAGG 1 cut(s) 1194
BsuRI GGCC 3 cut(s) 345, 352, 803
BsuTUI ATCGAT 1 cut(s) 1032
BtgI CCRYGG 1 cut(s) 346
BtsCI GGATG 1 cut(s) 787
BtsIMutI CAGTG 2 cut(s) 126, 413
BveI ACCTGC 1 cut(s) 230
Cac8I GCNNGC 1 cut(s) 237
CaiI CAGNNNCTG 2 cut(s) 194, 1286
CciI TCATGA 2 cut(s) 298, 415
Cfr13I GGNCC 1 cut(s) 350
ClaI ATCGAT 1 cut(s) 1032
Csp6I GTAC 6 cut(s) 197, 519, 732, 991, 1016, 1337
CviQI GTAC 6 cut(s) 197, 519, 732, 991, 1016, 1337
DdeI CTNAG 6 cut(s) 26, 129, 974, 1075, 1194, 1287
DpnI GATC 7 cut(s) 102, 303, 765, 876, 928, 936, 1035
DpnII GATC 7 cut(s) 100, 301, 763, 874, 926, 934, 1033
DraI TTTAAA 1 cut(s) 114
DrdI GACNNNNNNGTC 2 cut(s) 449, 620
DseDI GACNNNNNNGTC 2 cut(s) 449, 620
EaeI YGGCCR 2 cut(s) 343, 801
EciI GGCGGA 1 cut(s) 959
Eco130I CCWWGG 2 cut(s) 346, 720
Eco31I GGTCTC 1 cut(s) 417
Eco32I GATATC 1 cut(s) 1063
Eco57I CTGAAG 3 cut(s) 290, 543, 1077
Eco81I CCTNAGG 1 cut(s) 1194
Eco88I CYCGRG 2 cut(s) 633, 756
EcoNI CCTNNNNNAGG 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 187, 270
EcoRV GATATC 1 cut(s) 1063
EcoT14I CCWWGG 2 cut(s) 346, 720
EcoT22I ATGCAT 2 cut(s) 789, 1148
ErhI CCWWGG 2 cut(s) 346, 720
FalI AAGNNNNNCTT 2 cut(s) 545, 577
FauI CCCGC 1 cut(s) 724
FauNDI CATATG 1 cut(s) 363
FblI GTMKAC 1 cut(s) 780
FokI GGATG 1 cut(s) 774
FspBI CTAG 5 cut(s) 204, 221, 512, 516, 647
GsuI CTGGAG 1 cut(s) 915
HaeIII GGCC 3 cut(s) 345, 352, 803
HapII CCGG 2 cut(s) 38, 52
HinfI GANTC 4 cut(s) 495, 629, 690, 1323
HpaII CCGG 2 cut(s) 38, 52
HphI GGTGA 1 cut(s) 254
Hpy166II GTNNAC 5 cut(s) 70, 152, 644, 739, 781
Hpy188I TCNGA 6 cut(s) 255, 309, 532, 626, 1078, 1288
Hpy8I GTNNAC 5 cut(s) 70, 152, 644, 739, 781
HpyAV CCTTC 2 cut(s) 888, 975
HpyCH4III ACNGT 4 cut(s) 250, 313, 736, 778
HpyCH4IV ACGT 3 cut(s) 78, 1101, 1316
HpyF10VI GCNNNNNNNGC 1 cut(s) 758
HpyF3I CTNAG 6 cut(s) 26, 129, 974, 1075, 1194, 1287
HpySE526I ACGT 3 cut(s) 78, 1101, 1316
KpnI GGTACC 1 cut(s) 1019
Kzo9I GATC 7 cut(s) 100, 301, 763, 874, 926, 934, 1033
LmnI GCTCC 2 cut(s) 191, 280
LweI GCATC 4 cut(s) 466, 796, 814, 1155
MaeI CTAG 5 cut(s) 204, 221, 512, 516, 647
MaeII ACGT 3 cut(s) 78, 1101, 1316
MaeIII GTNAC 4 cut(s) 169, 1001, 1093, 1215
MalI GATC 7 cut(s) 102, 303, 765, 876, 928, 936, 1035
MboI GATC 7 cut(s) 100, 301, 763, 874, 926, 934, 1033
MboII GAAGA 6 cut(s) 32, 296, 852, 1070, 1091, 1094
MflI RGATCY 2 cut(s) 926, 934
MhlI GDGCHC 1 cut(s) 216
MlsI TGGCCA 2 cut(s) 345, 803
MluCI AATT 3 cut(s) 116, 995, 1268
MluNI TGGCCA 2 cut(s) 345, 803
MlyI GAGTC 3 cut(s) 504, 623, 699
MnlI CCTC 7 cut(s) 114, 249, 392, 920, 1146, 1189, 1282
Mox20I TGGCCA 2 cut(s) 345, 803
Mph1103I ATGCAT 2 cut(s) 789, 1148
MroXI GAANNNNTTC 2 cut(s) 249, 557
MscI TGGCCA 2 cut(s) 345, 803
MseI TTAA 3 cut(s) 113, 422, 870
MslI CAYNNNNRTG 1 cut(s) 468
Msp20I TGGCCA 2 cut(s) 345, 803
MspI CCGG 2 cut(s) 38, 52
MspR9I CCNGG 2 cut(s) 189, 272
Mva1269I GAATGC 1 cut(s) 1148
MvaI CCWGG 2 cut(s) 189, 272
MwoI GCNNNNNNNGC 1 cut(s) 758
NcoI CCATGG 1 cut(s) 346
NdeI CATATG 1 cut(s) 363
NdeII GATC 7 cut(s) 100, 301, 763, 874, 926, 934, 1033
NlaIV GGNNCC 2 cut(s) 775, 1017
NmuCI GTSAC 1 cut(s) 169
NsiI ATGCAT 2 cut(s) 789, 1148
NspI RCATGY 2 cut(s) 68, 787
PaeR7I CTCGAG 2 cut(s) 633, 756
PagI TCATGA 2 cut(s) 298, 415
PaqCI CACCTGC 1 cut(s) 230
PciI ACATGT 1 cut(s) 64
PctI GAATGC 1 cut(s) 1148
PdmI GAANNNNTTC 2 cut(s) 249, 557
PfeI GAWTC 1 cut(s) 1323
PflMI CCANNNNNTGG 1 cut(s) 277
PfoI TCCNGGA 1 cut(s) 187
PleI GAGTC 3 cut(s) 503, 623, 698
PpsI GAGTC 3 cut(s) 503, 623, 698
PscI ACATGT 1 cut(s) 64
PshBI ATTAAT 1 cut(s) 870
PsiI TTATAA 1 cut(s) 1167
Psp1406I AACGTT 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 187, 270
PspGI CCWGG 2 cut(s) 187, 270
PspN4I GGNNCC 2 cut(s) 775, 1017
PspPI GGNCC 1 cut(s) 350
PspXI VCTCGAGB 1 cut(s) 756
PstNI CAGNNNCTG 2 cut(s) 194, 1286
PsuI RGATCY 2 cut(s) 926, 934
RsaI GTAC 6 cut(s) 198, 520, 733, 992, 1017, 1338
RsaNI GTAC 6 cut(s) 197, 519, 732, 991, 1016, 1337
RseI CAYNNNNRTG 1 cut(s) 468
SaqAI TTAA 3 cut(s) 113, 422, 870
Sau3AI GATC 7 cut(s) 100, 301, 763, 874, 926, 934, 1033
Sau96I GGNCC 1 cut(s) 350
ScaI AGTACT 2 cut(s) 520, 1338
SchI GAGTC 3 cut(s) 504, 623, 699
ScrFI CCNGG 2 cut(s) 189, 272
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 4 cut(s) 466, 796, 814, 1155
Sfr274I CTCGAG 2 cut(s) 633, 756
SlaI CTCGAG 2 cut(s) 633, 756
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 3 cut(s) 633, 756, 1332
SmoI CTYRAG 3 cut(s) 633, 756, 1332
Sse9I AATT 3 cut(s) 116, 995, 1268
SsiI CCGC 3 cut(s) 717, 970, 1013
SspMI CTAG 5 cut(s) 204, 221, 512, 516, 647
StyD4I CCNGG 2 cut(s) 187, 270
StyI CCWWGG 2 cut(s) 346, 720
TaaI ACNGT 4 cut(s) 250, 313, 736, 778
TaiI ACGT 3 cut(s) 81, 1104, 1319
TaqI TCGA 5 cut(s) 453, 586, 634, 757, 1032
TasI AATT 3 cut(s) 116, 995, 1268
TatI WGTACW 3 cut(s) 196, 518, 1336
TfiI GAWTC 1 cut(s) 1323
Tru1I TTAA 3 cut(s) 113, 422, 870
Tru9I TTAA 3 cut(s) 113, 422, 870
TscAI CASTG 2 cut(s) 133, 413
TseFI GTSAC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 5 cut(s) 33, 60, 71, 109, 717
TspRI CASTG 2 cut(s) 133, 413
Van91I CCANNNNNTGG 1 cut(s) 277
VspI ATTAAT 1 cut(s) 870
XagI CCTNNNNNAGG 1 cut(s) 386
XapI RAATTY 1 cut(s) 116
XbaI TCTAGA 1 cut(s) 203
XceI RCATGY 2 cut(s) 68, 787
XcmI CCANNNNNNNNNTGG 1 cut(s) 847
XhoI CTCGAG 2 cut(s) 633, 756
XmiI GTMKAC 1 cut(s) 780
XmnI GAANNNNTTC 2 cut(s) 249, 557
XspI CTAG 5 cut(s) 204, 221, 512, 516, 647
ZrmI AGTACT 2 cut(s) 520, 1338
Zsp2I ATGCAT 2 cut(s) 789, 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.