Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8513743.1

Orthogroup ID

OG0002219

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 4071

Gene Structure 4071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8513743.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atggcgaacgactttcaggatcgccggaatttgaagctagttcacgataacgttcacggcatcgtctacctcgagccgctctccttgaattttattgacactgaacagcttcgtgatctgaagcaacttggtctgaccagcatggtttaccctggagctgtacattctagatttgagcattcacttggggtatattggcttgctggtgaagctatcaataaaatcaaaacttaccaaggcgaggagcttggaattgacagctttgatgtgagaacagtaaaacttgctggactactgcatgatattggccatgggcctttcagccacatgtttgagagcgcgtttcttcctcgggttcattctggtgacaaatggtcccatgaggatatgtctgtgaagatgattgactacattgtcgacgagcaccacattgacattgattctgaagagctaaagagagtgaaggacctgatcctggctagctctaaacatgtggcacagaatgctgcaccagaaaagcggttcttgtatgatattgttgctaatggacgcactggaatagatgttgacaagtttgattacattgaacgtgactcccgtgcctgtggcataggctgtaattttcactttgagaggctgatggaaaccatgcgagttatggaggatgagatatgttaccgtgctagtgaatatctgacagtcaacaagctgtttatgactcgggctaatctgcatcggactgtctatacgcatgcaaaagtgaaggctattgaactcatggctgttgatgctctgtgcaaagcaaatgctgaacttgggattgcagactccattcacaaaccatctgaattctggaaggttaaagagctttatcaatta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fer4_14 HD Radical_SAM

Protein Analysis

293

Amino Acids

33.64

Weight (kDa)

5.88

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40270 AT5G40270 AT5G40290
fragaria_vesca	FvH4_4g34540 FvH4_4g34540 FvH4_6g50610 FvH4_6g50610 FvH4_6g50610
malus_domestica	MD09G1034800.v1.1 MD16G1092000.v1.1
prunus_persica	Prupe.1G254300_v2.0.a1 Prupe.1G254300_v2.0.a1 Prupe.1G254300_v2.0.a1 Prupe.3G283700_v2.0.a1 Prupe.3G283700_v2.0.a1 Prupe.3G283700_v2.0.a1
pyrus_communis	pycom111g02770 pycom16g07850
rosa_chinensis	RchiOBHm_Chr2g0171401 RchiOBHm_Chr4g0443921
rosa_laevigata	RLG00000005877 RLG00000022010
rosa_multiflora	Rmu_co8513743.1_g000001 Rmu_sc0007646.1_g000008 Rmu_sc0030144.1_g000004
rosa_roxburghii	Rroxscaffold_2G00080690 Rroxscaffold_5G00384470
rosa_rugosa	Rorug02G0553800 Rorug02G0553800 Rorug04G0348200 Rorug04G0348200 Rorug04G0348200
rosa_samantha	Rh2AG628200 Rh2BG638600 Rh2CG607300 Rh2DG649600 Rh2DG655700 Rh4AG408800 Rh4BG419900 Rh4CG433900 Rh4DG414900
rosa_wichuraiana	Rw2G052030 Rw4G035110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	413
AccBSI	CCGCTC	1 cut(s)	79
AccI	GTMKAC	2 cut(s)	66, 417
AccII	CGCG	1 cut(s)	341
AciI	CCGC	2 cut(s)	77, 520
AclI	AACGTT	1 cut(s)	51
AclWI	GGATC	2 cut(s)	27, 466
AcoI	YGGCCR	1 cut(s)	307
AcsI	RAATTY	3 cut(s)	28, 88, 848
AcuI	CTGAAG	2 cut(s)	140, 465
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	241, 475
AflIII	ACRYGT	2 cut(s)	327, 490
AgsI	TTSAA	4 cut(s)	34, 88, 587, 773
AhdI	GACNNNNNGTC	1 cut(s)	373
AjnI	CCWGG	2 cut(s)	151, 474
Alw21I	GWGCWC	1 cut(s)	426
AlwI	GGATC	2 cut(s)	27, 466
Ama87I	CYCGRG	3 cut(s)	71, 351, 720
AoxI	GGCC	2 cut(s)	307, 314
ApeKI	GCWGC	1 cut(s)	506
ApoI	RAATTY	3 cut(s)	28, 88, 848
Asp700I	GAANNNNTTC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	3 cut(s)	314, 375, 466
AsuHPI	GGTGA	2 cut(s)	218, 377
AsuNHI	GCTAGC	1 cut(s)	479
AvaI	CYCGRG	3 cut(s)	71, 351, 720
AvaII	GGWCC	2 cut(s)	375, 466
BalI	TGGCCA	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	493
BccI	CCATC	2 cut(s)	634, 850
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	2 cut(s)	153, 476
BfaI	CTAG	4 cut(s)	38, 168, 480, 684
BisI	GCNGC	2 cut(s)	77, 507
BlsI	GCNGC	2 cut(s)	78, 508
Bme1390I	CCNGG	2 cut(s)	153, 476
Bme18I	GGWCC	2 cut(s)	375, 466
BmeRI	GACNNNNNGTC	1 cut(s)	373
BmeT110I	CYCGRG	3 cut(s)	71, 351, 720
BmgT120I	GGNCC	3 cut(s)	314, 375, 466
BmiI	GGNNCC	1 cut(s)	377
BmrFI	CCNGG	2 cut(s)	153, 476
BmsI	GCATC	3 cut(s)	69, 742, 778
BmtI	GCTAGC	1 cut(s)	483
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	1 cut(s)	174
BsaJI	CCNNGG	4 cut(s)	151, 235, 310, 350
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 475
Bse1I	ACTGG	1 cut(s)	559
BseBI	CCWGG	2 cut(s)	153, 476
BseDI	CCNNGG	4 cut(s)	151, 235, 310, 350
BseGI	GGATG	1 cut(s)	670
BseLI	CCNNNNNNNGG	2 cut(s)	241, 475
BseNI	ACTGG	1 cut(s)	559
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	493
BsgI	GTGCAG	1 cut(s)	492
Bsh1236I	CGCG	1 cut(s)	341
BshFI	GGCC	2 cut(s)	309, 316
BsiHKAI	GWGCWC	1 cut(s)	426
BsiHKCI	CYCGRG	3 cut(s)	71, 351, 720
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	241, 475
BsmFI	GGGAC	1 cut(s)	361
BsmI	GAATGC	2 cut(s)	178, 508
BsnI	GGCC	2 cut(s)	309, 316
BsoBI	CYCGRG	3 cut(s)	71, 351, 720
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp1407I	TGTACA	1 cut(s)	160
Bsp143I	GATC	3 cut(s)	19, 115, 471
Bsp19I	CCATGG	1 cut(s)	310
BspACI	CCGC	2 cut(s)	77, 520
BspANI	GGCC	2 cut(s)	309, 316
BspFNI	CGCG	1 cut(s)	341
BspLI	GGNNCC	1 cut(s)	377
BspOI	GCTAGC	1 cut(s)	483
BspPI	GGATC	2 cut(s)	27, 466
BspQI	GCTCTTC	1 cut(s)	441
BsrBI	CCGCTC	1 cut(s)	79
BsrGI	TGTACA	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	559
BssECI	CCNNGG	4 cut(s)	151, 235, 310, 350
BssMI	GATC	3 cut(s)	19, 115, 471
BssT1I	CCWWGG	2 cut(s)	235, 310
Bst2UI	CCWGG	2 cut(s)	153, 476
Bst4CI	ACNGT	4 cut(s)	277, 680, 700, 742
Bst6I	CTCTTC	1 cut(s)	441
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstAUI	TGTACA	1 cut(s)	160
BstC8I	GCNNGC	3 cut(s)	201, 481, 753
BstDSI	CCRYGG	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	670
BstFNI	CGCG	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	3 cut(s)	22, 118, 474
BstMBI	GATC	3 cut(s)	19, 115, 471
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 503, 788
BstNI	CCWGG	2 cut(s)	153, 476
BstNSI	RCATGY	3 cut(s)	331, 494, 755
BstSCI	CCNGG	2 cut(s)	151, 474
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	1 cut(s)	493
BsuRI	GGCC	2 cut(s)	309, 316
BtgI	CCRYGG	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	670
BtsIMutI	CAGTG	2 cut(s)	99, 552
Cac8I	GCNNGC	3 cut(s)	201, 481, 753
CfoI	GCGC	1 cut(s)	341
Cfr13I	GGNCC	3 cut(s)	314, 375, 466
CseI	GACGC	1 cut(s)	558
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	9 cut(s)	142, 299, 311, 328, 380, 491, 649, 752, 778
CviQI	GTAC	1 cut(s)	161
DpnI	GATC	3 cut(s)	21, 117, 473
DpnII	GATC	3 cut(s)	19, 115, 471
DrdI	GACNNNNNNGTC	1 cut(s)	413
DriI	GACNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	413
EaeI	YGGCCR	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	441
Eam1105I	GACNNNNNGTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	441
Eco130I	CCWWGG	2 cut(s)	235, 310
Eco47I	GGWCC	2 cut(s)	375, 466
Eco57I	CTGAAG	2 cut(s)	140, 465
Eco88I	CYCGRG	3 cut(s)	71, 351, 720
EcoO109I	RGGNCCY	1 cut(s)	466
EcoRI	GAATTC	1 cut(s)	848
EcoRII	CCWGG	2 cut(s)	151, 474
EcoT14I	CCWWGG	2 cut(s)	235, 310
ErhI	CCWWGG	2 cut(s)	235, 310
FaeI	CATG	9 cut(s)	145, 302, 314, 331, 383, 494, 652, 755, 781
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	9 cut(s)	141, 298, 310, 327, 379, 490, 648, 751, 777
FblI	GTMKAC	2 cut(s)	66, 417
Fnu4HI	GCNGC	2 cut(s)	77, 507
FokI	GGATG	1 cut(s)	677
Fsp4HI	GCNGC	2 cut(s)	77, 507
FspBI	CTAG	4 cut(s)	38, 168, 480, 684
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	2 cut(s)	77, 507
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	309, 316
HapII	CCGG	1 cut(s)	25
HgaI	GACGC	1 cut(s)	558
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	9 cut(s)	145, 302, 314, 331, 383, 494, 652, 755, 781
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HincII	GTYRAC	3 cut(s)	418, 568, 703
HindII	GTYRAC	3 cut(s)	418, 568, 703
HinfI	GANTC	4 cut(s)	440, 593, 718, 827
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	2 cut(s)	218, 377
Hpy166II	GTNNAC	7 cut(s)	43, 55, 67, 148, 418, 568, 703
Hpy188I	TCNGA	6 cut(s)	120, 135, 445, 696, 738, 847
Hpy188III	TCNNGA	5 cut(s)	17, 44, 113, 168, 853
Hpy8I	GTNNAC	7 cut(s)	43, 55, 67, 148, 418, 568, 703
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	3 cut(s)	457, 757, 850
HpyCH4III	ACNGT	4 cut(s)	277, 680, 700, 742
HpyCH4IV	ACGT	2 cut(s)	51, 589
HpyCH4V	TGCA	6 cut(s)	298, 509, 733, 755, 798, 824
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 503, 788
HpySE526I	ACGT	2 cut(s)	51, 589
Hsp92II	CATG	9 cut(s)	145, 302, 314, 331, 383, 494, 652, 755, 781
HspAI	GCGC	1 cut(s)	339
Kzo9I	GATC	3 cut(s)	19, 115, 471
LguI	GCTCTTC	1 cut(s)	441
LmnI	GCTCC	2 cut(s)	155, 244
Lsp1109I	GCAGC	1 cut(s)	493
LweI	GCATC	3 cut(s)	69, 742, 778
MaeI	CTAG	4 cut(s)	38, 168, 480, 684
MaeII	ACGT	2 cut(s)	51, 589
MaeIII	GTNAC	3 cut(s)	365, 590, 674
MalI	GATC	3 cut(s)	21, 117, 473
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	3 cut(s)	19, 115, 471
MboII	GAAGA	3 cut(s)	338, 409, 458
MhlI	GDGCHC	1 cut(s)	426
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	6 cut(s)	28, 88, 252, 619, 848, 875
MluNI	TGGCCA	1 cut(s)	309
MlyI	GAGTC	3 cut(s)	587, 712, 821
MnlI	CCTC	6 cut(s)	80, 235, 360, 376, 627, 655
Mox20I	TGGCCA	1 cut(s)	309
MroXI	GAANNNNTTC	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	1 cut(s)	861
MslI	CAYNNNNRTG	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	309
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	2 cut(s)	153, 476
Mva1269I	GAATGC	2 cut(s)	178, 508
MvaI	CCWGG	2 cut(s)	153, 476
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	3 cut(s)	209, 503, 788
NcoI	CCATGG	1 cut(s)	310
NdeII	GATC	3 cut(s)	19, 115, 471
NheI	GCTAGC	1 cut(s)	479
NlaIII	CATG	9 cut(s)	145, 302, 314, 331, 383, 494, 652, 755, 781
NlaIV	GGNNCC	1 cut(s)	377
NmuCI	GTSAC	2 cut(s)	365, 590
NspI	RCATGY	3 cut(s)	331, 494, 755
PaeI	GCATGC	1 cut(s)	755
PaeR7I	CTCGAG	1 cut(s)	71
PciI	ACATGT	2 cut(s)	327, 490
PciSI	GCTCTTC	1 cut(s)	441
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 595
PctI	GAATGC	2 cut(s)	178, 508
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	440
PkrI	GCNGC	2 cut(s)	78, 508
PleI	GAGTC	3 cut(s)	587, 712, 821
PpsI	GAGTC	3 cut(s)	587, 712, 821
PpuMI	RGGWCCY	1 cut(s)	466
PscI	ACATGT	2 cut(s)	327, 490
Psp1406I	AACGTT	1 cut(s)	51
Psp5II	RGGWCCY	1 cut(s)	466
Psp6I	CCWGG	2 cut(s)	151, 474
PspGI	CCWGG	2 cut(s)	151, 474
PspN4I	GGNNCC	1 cut(s)	377
PspPI	GGNCC	3 cut(s)	314, 375, 466
PspPPI	RGGWCCY	1 cut(s)	466
PspXI	VCTCGAGB	1 cut(s)	71
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
RseI	CAYNNNNRTG	1 cut(s)	363
SalI	GTCGAC	1 cut(s)	416
SapI	GCTCTTC	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	861
SatI	GCNGC	2 cut(s)	77, 507
Sau3AI	GATC	3 cut(s)	19, 115, 471
Sau96I	GGNCC	3 cut(s)	314, 375, 466
SchI	GAGTC	3 cut(s)	587, 712, 821
ScrFI	CCNGG	2 cut(s)	153, 476
SduI	GDGCHC	1 cut(s)	426
SfaNI	GCATC	3 cut(s)	69, 742, 778
Sfr274I	CTCGAG	1 cut(s)	71
SinI	GGWCC	2 cut(s)	375, 466
SlaI	CTCGAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SphI	GCATGC	1 cut(s)	755
Sse9I	AATT	6 cut(s)	28, 88, 252, 619, 848, 875
SsiI	CCGC	2 cut(s)	77, 520
SspMI	CTAG	4 cut(s)	38, 168, 480, 684
StyD4I	CCNGG	2 cut(s)	151, 474
StyI	CCWWGG	2 cut(s)	235, 310
TaaI	ACNGT	4 cut(s)	277, 680, 700, 742
TaiI	ACGT	2 cut(s)	54, 592
TaqI	TCGA	2 cut(s)	72, 417
TasI	AATT	6 cut(s)	28, 88, 252, 619, 848, 875
TatI	WGTACW	1 cut(s)	160
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	1 cut(s)	861
Tru9I	TTAA	1 cut(s)	861
TscAI	CASTG	2 cut(s)	106, 559
TseFI	GTSAC	2 cut(s)	365, 590
TseI	GCWGC	1 cut(s)	506
Tsp45I	GTSAC	2 cut(s)	365, 590
TspDTI	ATGAA	1 cut(s)	347
TspRI	CASTG	2 cut(s)	106, 559
VpaK11BI	GGWCC	2 cut(s)	375, 466
XapI	RAATTY	3 cut(s)	28, 88, 848
XbaI	TCTAGA	1 cut(s)	167
XceI	RCATGY	3 cut(s)	331, 494, 755
XcmI	CCANNNNNNNNNTGG	2 cut(s)	655, 849
XhoI	CTCGAG	1 cut(s)	71
XmiI	GTMKAC	2 cut(s)	66, 417
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	4 cut(s)	38, 168, 480, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.