MD16G1092000.v1.1

4Fe-4S single cluster domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
6359961 .. 6365756
5796 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1092000.v1.1.491

Sequence Viewer

Length: 1413 bp
ATGGGAGCGCGTGCGAATGAAGACTTGGTGCAGTTCACCGATAGCATCTATCAGGACCGGAGCTTGTCGAAGCATGTTCGCGATAACGTCCATGGAATCATCTATCTCGAGCCGCTTTTCTTGAAGTTCATCGACACTGCACAGTTTCAGAGGCTCCGTGATCTTAAACAACTTGGTCTGGCACACATGGTTTACCCTGGGGCTGTACATTCTCGGTTTGAGCATTCACTCGGGGTGTATTGGCTGGCTGGTGAAGCTATCAATAAAATTAAACTCTACCATGAGGACCTCAAAATTGATTCTTTTGACAGGACAACAGTAAAACTTGCTGGACTACTGCATGATATTGGCCATGGGCCGTTCAGCCACATGTTTGAGCGCGAGTTTCTTCCTCGGGTTATTAACGGGTGCACATGGTCTCATGAGGAGATGTCTGTGAACATGATCGACTACATTGTCGAAGAGAACAATATTGATATTGATTCTGCAGTGCTTAAAAGGGTGAAGGAACTGATCCTTGCTAGCTCCAACCATGGGGAACAGAATAGCATGACAAAGAATCGTTTCTTGTATGATATTGTTGCAAATGGGCGAACTGGAATAGATGTTGACAAGTTTGATTACATGGTGCGTGACTCCCGAGCATGTGGTATAGGCTGTAGTTTTCAGTTCGAAAGGCTGATGGAAACTATGAGAGTTATAGATGATGAGATATGTTATCGTGCTAGTGATTATCTGACAGTCCACAAGCTCTTTGCCACTCGTGCTGATCTGCATCGAACCGTGTACACACATGCTAAAGTGAAGGCTGTTGAACTCATGGCCATTGATGCTATGTGCCTTGCAAATAGTGCTTTTAAAATTGCAGAATCAATTCAAAGCGCAGCTGAGTTTTGGAAGTTGGATGACACAATTTTGAAGAGGATTGAAACTTCTGATGACCCTGAACTCAAGGAAGCTAAGGATTTGATCCATCGCATTCGAAGAAGGGATCTTTACCAGTTCTGCAACGAGTATTCTGTTCCAAAGGAAAACCTAGAGCATTTCAAAGACATCACGCCTGAAGACATAGTTTGTTCCCAGAAATCTGGTAGTGTTACACTCAAGGAAGAGGATGTTGCAGTATGCACTGTTAAAATTGATTTGACTCATGGAACCAAGAACCCTCTTGAAAGAATCAATTTTTTCAAGGATTATGAGAGTGCTCTAAATGGTGAAAAGTTTCTGATCCAAGATGATCGCATAAGTCACTTGCTTCCAACATTCTATCAAGACAAGATAGTCAGGGTGTACGCGAAGAAGCCCGAAGTGGTTGCAGCAGTTTCCGAGGCCTTTGAGATTTATCAGATGAAAACATACGGACGGACAGAACAGGTACATTCAACTCCTAAGAAGAAACAACGCCAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

471

Amino Acids

54.29

Weight (kDa)

6.11

Isoelectric Point (pI)

28.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HD PF01966 72 - 180 3.3e-12 HD domain
HD_assoc_2 PF19276 224 - 334 2.6e-06 HD associated region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 455, 1280
AccII CGCG 4 cut(s) 10, 81, 381, 1295
AciI CCGC 1 cut(s) 113
AclWI GGATC 4 cut(s) 508, 964, 999, 1222
AcoI YGGCCR 2 cut(s) 349, 822
AcuI CTGAAG 1 cut(s) 1083
AfaI GTAC 4 cut(s) 207, 788, 1292, 1377
AfiI CCNNNNNNNGG 1 cut(s) 534
AflIII ACRYGT 1 cut(s) 369
AgsI TTSAA 9 cut(s) 124, 815, 878, 919, 929, 1048, 1172, 1189, 1383
AjnI CCWGG 1 cut(s) 196
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 6 cut(s) 63, 257, 525, 751, 887, 959
AluI AGCT 6 cut(s) 63, 257, 525, 751, 887, 959
Alw21I GWGCWC 2 cut(s) 413, 1207
Alw26I GTCTC 1 cut(s) 423
Alw44I GTGCAC 1 cut(s) 409
AlwI GGATC 4 cut(s) 508, 964, 999, 1222
Ama87I CYCGRG 4 cut(s) 107, 230, 393, 639
AoxI GGCC 4 cut(s) 349, 356, 822, 1329
ApaLI GTGCAC 1 cut(s) 409
ApeKI GCWGC 2 cut(s) 884, 1316
Asp700I GAANNNNTTC 3 cut(s) 563, 873, 1221
AspLEI GCGC 3 cut(s) 10, 381, 884
AspS9I GGNCC 3 cut(s) 55, 286, 356
AsuHPI GGTGA 4 cut(s) 28, 263, 514, 1226
AsuII TTCGAA 2 cut(s) 672, 982
AsuNHI GCTAGC 1 cut(s) 521
AvaI CYCGRG 4 cut(s) 107, 230, 393, 639
AvaII GGWCC 2 cut(s) 55, 286
BaeGI GKGCMC 1 cut(s) 413
BalI TGGCCA 2 cut(s) 351, 824
BauI CACGAG 1 cut(s) 762
BbsI GAAGAC 2 cut(s) 27, 1071
Bbv12I GWGCWC 2 cut(s) 413, 1207
BbvI GCAGC 2 cut(s) 896, 1328
BccI CCATC 2 cut(s) 676, 981
BceAI ACGGC 1 cut(s) 343
BcgI CGANNNNNNTGC 2 cut(s) 1295, 1329
BciT130I CCWGG 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 423
BfaI CTAG 3 cut(s) 522, 726, 1037
BfmI CTRYAG 2 cut(s) 486, 658
BisI GCNGC 3 cut(s) 113, 885, 1317
BlsI GCNGC 3 cut(s) 114, 886, 1318
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 2 cut(s) 55, 286
BmeT110I CYCGRG 4 cut(s) 107, 230, 393, 639
BmgT120I GGNCC 3 cut(s) 55, 286, 356
BmiI GGNNCC 2 cut(s) 155, 1156
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 3 cut(s) 54, 784, 820
BmtI GCTAGC 1 cut(s) 525
BpiI GAAGAC 2 cut(s) 27, 1071
Bpu10I CCTNAGC 1 cut(s) 960
Bpu14I TTCGAA 2 cut(s) 672, 982
BpuEI CTTGAG 2 cut(s) 935, 1088
BsaBI GATNNNNATC 1 cut(s) 774
BsaI GGTCTC 1 cut(s) 423
BsaJI CCNNGG 7 cut(s) 91, 196, 197, 352, 392, 532, 1326
BsaWI WCCGGW 1 cut(s) 57
Bsc4I CCNNNNNNNGG 1 cut(s) 534
Bse1I ACTGG 2 cut(s) 601, 1000
Bse8I GATNNNNATC 1 cut(s) 774
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 7 cut(s) 91, 196, 197, 352, 392, 532, 1326
BseGI GGATG 2 cut(s) 910, 1120
BseJI GATNNNNATC 1 cut(s) 774
BseLI CCNNNNNNNGG 1 cut(s) 534
BseMII CTCAG 1 cut(s) 879
BseNI ACTGG 2 cut(s) 601, 1000
BseRI GAGGAG 1 cut(s) 440
BseSI GKGCMC 1 cut(s) 413
BseXI GCAGC 2 cut(s) 896, 1328
BsgI GTGCAG 2 cut(s) 50, 123
Bsh1236I CGCG 4 cut(s) 10, 81, 381, 1295
BshFI GGCC 4 cut(s) 351, 358, 824, 1331
BsiHKAI GWGCWC 2 cut(s) 413, 1207
BsiHKCI CYCGRG 4 cut(s) 107, 230, 393, 639
BsiSI CCGG 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 534
BsmAI GTCTC 1 cut(s) 423
BsmI GAATGC 2 cut(s) 223, 978
BsnI GGCC 4 cut(s) 351, 358, 824, 1331
Bso31I GGTCTC 1 cut(s) 423
BsoBI CYCGRG 4 cut(s) 107, 230, 393, 639
Bsp119I TTCGAA 2 cut(s) 672, 982
Bsp1286I GDGCHC 2 cut(s) 413, 1207
Bsp1407I TGTACA 2 cut(s) 205, 786
Bsp143I GATC 8 cut(s) 160, 444, 513, 769, 969, 991, 1227, 1237
Bsp19I CCATGG 3 cut(s) 91, 352, 532
Bsp68I TCGCGA 1 cut(s) 81
BspACI CCGC 1 cut(s) 113
BspANI GGCC 4 cut(s) 351, 358, 824, 1331
BspCNI CTCAG 1 cut(s) 880
BspFNI CGCG 4 cut(s) 10, 81, 381, 1295
BspHI TCATGA 1 cut(s) 421
BspLI GGNNCC 2 cut(s) 155, 1156
BspMAI CTGCAG 1 cut(s) 490
BspOI GCTAGC 1 cut(s) 525
BspPI GGATC 4 cut(s) 508, 964, 999, 1222
BspT104I TTCGAA 2 cut(s) 672, 982
BspTNI GGTCTC 1 cut(s) 423
BsrGI TGTACA 2 cut(s) 205, 786
BsrI ACTGG 2 cut(s) 601, 1000
BssECI CCNNGG 7 cut(s) 91, 196, 197, 352, 392, 532, 1326
BssMI GATC 8 cut(s) 160, 444, 513, 769, 969, 991, 1227, 1237
BssSI CACGAG 1 cut(s) 762
BssT1I CCWWGG 3 cut(s) 91, 352, 532
Bst2BI CACGAG 1 cut(s) 762
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 5 cut(s) 144, 319, 742, 784, 1132
Bst6I CTCTTC 3 cut(s) 456, 914, 1104
BstAPI GCANNNNNTGC 1 cut(s) 851
BstAUI TGTACA 2 cut(s) 205, 786
BstBI TTCGAA 2 cut(s) 672, 982
BstC8I GCNNGC 3 cut(s) 12, 246, 523
BstDEI CTNAG 3 cut(s) 888, 960, 1389
BstDSI CCRYGG 3 cut(s) 91, 352, 532
BstF5I GGATG 2 cut(s) 910, 1120
BstFNI CGCG 4 cut(s) 10, 81, 381, 1295
BstHHI GCGC 3 cut(s) 10, 381, 884
BstKTI GATC 8 cut(s) 163, 447, 516, 772, 972, 994, 1230, 1240
BstMAI GTCTC 1 cut(s) 423
BstMBI GATC 8 cut(s) 160, 444, 513, 769, 969, 991, 1227, 1237
BstMWI GCNNNNNNNGC 4 cut(s) 254, 764, 830, 851
BstNI CCWGG 1 cut(s) 198
BstNSI RCATGY 4 cut(s) 77, 373, 648, 797
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 2 cut(s) 486, 658
BstSLI GKGCMC 1 cut(s) 413
BstUI CGCG 4 cut(s) 10, 81, 381, 1295
BstV1I GCAGC 2 cut(s) 896, 1328
BstV2I GAAGAC 2 cut(s) 27, 1071
BstX2I RGATCY 1 cut(s) 991
BstXI CCANNNNNNTGG 1 cut(s) 1088
BstYI RGATCY 1 cut(s) 991
BsuRI GGCC 4 cut(s) 351, 358, 824, 1331
BtgI CCRYGG 3 cut(s) 91, 352, 532
BtgZI GCGATG 1 cut(s) 959
BtsCI GGATG 2 cut(s) 910, 1120
BtsI GCAGTG 2 cut(s) 135, 495
BtsIMutI CAGTG 3 cut(s) 135, 495, 1128
BtuMI TCGCGA 1 cut(s) 81
Cac8I GCNNGC 3 cut(s) 12, 246, 523
CciI TCATGA 1 cut(s) 421
CfoI GCGC 3 cut(s) 10, 381, 884
Cfr13I GGNCC 3 cut(s) 55, 286, 356
Csp6I GTAC 4 cut(s) 206, 787, 1291, 1376
CviQI GTAC 4 cut(s) 206, 787, 1291, 1376
DdeI CTNAG 3 cut(s) 888, 960, 1389
DpnI GATC 8 cut(s) 162, 446, 515, 771, 971, 993, 1229, 1239
DpnII GATC 8 cut(s) 160, 444, 513, 769, 969, 991, 1227, 1237
DraI TTTAAA 1 cut(s) 859
DrdI GACNNNNNNGTC 2 cut(s) 455, 1280
DseDI GACNNNNNNGTC 2 cut(s) 455, 1280
EaeI YGGCCR 2 cut(s) 349, 822
Eam1104I CTCTTC 3 cut(s) 456, 914, 1104
EarI CTCTTC 3 cut(s) 456, 914, 1104
Eco130I CCWWGG 3 cut(s) 91, 352, 532
Eco147I AGGCCT 1 cut(s) 1331
Eco31I GGTCTC 1 cut(s) 423
Eco47I GGWCC 2 cut(s) 55, 286
Eco57I CTGAAG 1 cut(s) 1083
Eco88I CYCGRG 4 cut(s) 107, 230, 393, 639
EcoO109I RGGNCCY 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 196
EcoT14I CCWWGG 3 cut(s) 91, 352, 532
ErhI CCWWGG 3 cut(s) 91, 352, 532
Fnu4HI GCNGC 3 cut(s) 113, 885, 1317
FokI GGATG 2 cut(s) 917, 1127
Fsp4HI GCNGC 3 cut(s) 113, 885, 1317
FspBI CTAG 3 cut(s) 522, 726, 1037
GlaI GCGC 3 cut(s) 9, 380, 883
GluI GCNGC 3 cut(s) 113, 885, 1317
HaeIII GGCC 4 cut(s) 351, 358, 824, 1331
HapII CCGG 1 cut(s) 58
HhaI GCGC 3 cut(s) 10, 381, 884
Hin6I GCGC 3 cut(s) 8, 379, 882
HinP1I GCGC 3 cut(s) 8, 379, 882
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 8 cut(s) 96, 299, 482, 559, 635, 869, 1147, 1176
HpaII CCGG 1 cut(s) 58
HphI GGTGA 4 cut(s) 28, 263, 514, 1226
Hpy166II GTNNAC 9 cut(s) 36, 193, 411, 439, 610, 745, 787, 789, 1291
Hpy188I TCNGA 6 cut(s) 150, 738, 937, 1227, 1327, 1347
Hpy188III TCNNGA 8 cut(s) 53, 80, 107, 121, 422, 639, 1169, 1271
Hpy8I GTNNAC 9 cut(s) 36, 193, 411, 439, 610, 745, 787, 789, 1291
HpyAV CCTTC 3 cut(s) 499, 799, 981
HpyCH4III ACNGT 5 cut(s) 144, 319, 742, 784, 1132
HpyCH4IV ACGT 1 cut(s) 87
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 764, 830, 851
HpyF3I CTNAG 3 cut(s) 888, 960, 1389
HpySE526I ACGT 1 cut(s) 87
HspAI GCGC 3 cut(s) 8, 379, 882
Kzo9I GATC 8 cut(s) 160, 444, 513, 769, 969, 991, 1227, 1237
LmnI GCTCC 4 cut(s) 5, 60, 159, 530
Lsp1109I GCAGC 2 cut(s) 896, 1328
LweI GCATC 3 cut(s) 54, 784, 820
MaeI CTAG 3 cut(s) 522, 726, 1037
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 3 cut(s) 632, 1096, 1247
MalI GATC 8 cut(s) 162, 446, 515, 771, 971, 993, 1229, 1239
MboI GATC 8 cut(s) 160, 444, 513, 769, 969, 991, 1227, 1237
MboII GAAGA 9 cut(s) 32, 380, 473, 931, 996, 1076, 1121, 1309, 1405
MflI RGATCY 1 cut(s) 991
MhlI GDGCHC 2 cut(s) 413, 1207
MlsI TGGCCA 2 cut(s) 351, 824
MluCI AATT 7 cut(s) 267, 294, 861, 873, 912, 1137, 1180
MluNI TGGCCA 2 cut(s) 351, 824
MlyI GAGTC 2 cut(s) 629, 1141
MmeI TCCRAC 3 cut(s) 552, 882, 1283
MnlI CCTC 9 cut(s) 144, 277, 299, 402, 418, 915, 1105, 1176, 1321
Mox20I TGGCCA 2 cut(s) 351, 824
MroXI GAANNNNTTC 3 cut(s) 563, 873, 1221
MscI TGGCCA 2 cut(s) 351, 824
MseI TTAA 6 cut(s) 165, 270, 402, 495, 858, 1134
Msp20I TGGCCA 2 cut(s) 351, 824
MspA1I CMGCKG 1 cut(s) 887
MspI CCGG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 198
Mva1269I GAATGC 2 cut(s) 223, 978
MvaI CCWGG 1 cut(s) 198
MvnI CGCG 4 cut(s) 10, 81, 381, 1295
MwoI GCNNNNNNNGC 4 cut(s) 254, 764, 830, 851
NcoI CCATGG 3 cut(s) 91, 352, 532
NdeII GATC 8 cut(s) 160, 444, 513, 769, 969, 991, 1227, 1237
NheI GCTAGC 1 cut(s) 521
NlaIV GGNNCC 2 cut(s) 155, 1156
NmuCI GTSAC 2 cut(s) 632, 1247
NruI TCGCGA 1 cut(s) 81
NspI RCATGY 4 cut(s) 77, 373, 648, 797
NspV TTCGAA 2 cut(s) 672, 982
PaeR7I CTCGAG 1 cut(s) 107
PagI TCATGA 1 cut(s) 421
PasI CCCWGGG 1 cut(s) 197
PceI AGGCCT 1 cut(s) 1331
PciI ACATGT 1 cut(s) 369
PctI GAATGC 2 cut(s) 223, 978
PdmI GAANNNNTTC 3 cut(s) 563, 873, 1221
PfeI GAWTC 6 cut(s) 96, 299, 482, 559, 869, 1176
PkrI GCNGC 3 cut(s) 114, 886, 1318
PleI GAGTC 2 cut(s) 629, 1141
PpsI GAGTC 2 cut(s) 629, 1141
PpuMI RGGWCCY 1 cut(s) 286
PscI ACATGT 1 cut(s) 369
Psp5II RGGWCCY 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 155, 1156
PspPI GGNCC 3 cut(s) 55, 286, 356
PspPPI RGGWCCY 1 cut(s) 286
PstI CTGCAG 1 cut(s) 490
PsuI RGATCY 1 cut(s) 991
PvuII CAGCTG 1 cut(s) 887
RruI TCGCGA 1 cut(s) 81
RsaI GTAC 4 cut(s) 207, 788, 1292, 1377
RsaNI GTAC 4 cut(s) 206, 787, 1291, 1376
SaqAI TTAA 6 cut(s) 165, 270, 402, 495, 858, 1134
SatI GCNGC 3 cut(s) 113, 885, 1317
Sau3AI GATC 8 cut(s) 160, 444, 513, 769, 969, 991, 1227, 1237
Sau96I GGNCC 3 cut(s) 55, 286, 356
SchI GAGTC 2 cut(s) 629, 1141
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 2 cut(s) 413, 1207
SfaNI GCATC 3 cut(s) 54, 784, 820
SfcI CTRYAG 2 cut(s) 486, 658
Sfr274I CTCGAG 1 cut(s) 107
SfuI TTCGAA 2 cut(s) 672, 982
SinI GGWCC 2 cut(s) 55, 286
SlaI CTCGAG 1 cut(s) 107
SmlI CTYRAG 3 cut(s) 107, 950, 1103
SmoI CTYRAG 3 cut(s) 107, 950, 1103
Sse9I AATT 7 cut(s) 267, 294, 861, 873, 912, 1137, 1180
SseBI AGGCCT 1 cut(s) 1331
SsiI CCGC 1 cut(s) 113
SspI AATATT 1 cut(s) 472
SspMI CTAG 3 cut(s) 522, 726, 1037
StuI AGGCCT 1 cut(s) 1331
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 3 cut(s) 91, 352, 532
TaaI ACNGT 5 cut(s) 144, 319, 742, 784, 1132
TaiI ACGT 1 cut(s) 90
TaqI TCGA 8 cut(s) 68, 108, 132, 447, 459, 672, 778, 982
TasI AATT 7 cut(s) 267, 294, 861, 873, 912, 1137, 1180
TatI WGTACW 2 cut(s) 205, 786
TauI GCSGC 1 cut(s) 115
TfiI GAWTC 6 cut(s) 96, 299, 482, 559, 869, 1176
Tru1I TTAA 6 cut(s) 165, 270, 402, 495, 858, 1134
Tru9I TTAA 6 cut(s) 165, 270, 402, 495, 858, 1134
TscAI CASTG 3 cut(s) 142, 495, 1135
TseFI GTSAC 2 cut(s) 632, 1247
TseI GCWGC 2 cut(s) 884, 1316
Tsp45I GTSAC 2 cut(s) 632, 1247
TspDTI ATGAA 3 cut(s) 33, 118, 1364
TspGWI ACGGA 3 cut(s) 146, 1374, 1378
TspRI CASTG 3 cut(s) 142, 495, 1135
VneI GTGCAC 1 cut(s) 409
VpaK11BI GGWCC 2 cut(s) 55, 286
XceI RCATGY 4 cut(s) 77, 373, 648, 797
XhoI CTCGAG 1 cut(s) 107
XmnI GAANNNNTTC 3 cut(s) 563, 873, 1221
XspI CTAG 3 cut(s) 522, 726, 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.