Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002219

Physical Location & Seq

Genomic Coordinates Forward (+)

3629786 .. 3633896

Gene Structure 4111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00080690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGGGGGCTTACAGCAACGACGGCGTTTTGTTGTCTCCGATATACAGTTTGAATTCCGGCCAAGACCTCCGCTCTCTTTGAAGTTTATTGATACTGAGGAGTTTCAGAGGCTTAGAGACCTGAAACAACTCGGAGTGACAAACTCAGTTTTTCCTGGGGCTGTGCATTCCAGGTTTGAGCATTCGCTTGGTGTCTATTGGCTTGCTGGTGAAGCTGTTCAGAGGCTAAAAAATTATCAGGGTCTCGAACTTGATATTGACCACTTTGATCTCCAGACAGTAAAAATTGCAGGTCTATTGCATGATGTTGGCCATGGGCCTTTCAGTCACTTGTTTGAACGGGAGTTTCTTCCACGGGTTCAGAGTGGTTCCCATTGGTCTCATGAGGATATGTCAGTTAAGATGATTGACCACATTGTTAATCAGCATCATATTGATATTGACCCTGAGATGATTAAAAGAGTTAAGGAGATGATACTTGCTTCTGAAAATGCCAATGCAAAAGTAAGATGTGTTGAAATGAGCATTAGTGTAATTCTAGCTCCAGGGAGAAAGCCTTTTCTGTATGAAATTGTGGCAAATGGCCGTAATGGTATTGATGTGGACAAGTTTGATTATATTGTCCGTGACAGCCGAGCTTGTGGGCTGGGATGTAACTTTGAGTTTCAAAGATTAATGGAAACAATGCGGGTTTTGGATGATGAGATCTGCTACCGTGCTAAAGACTATCTCACCGTCCACAAATTATTTGTCACTCGGGCAGATTTGTATCGAACAGTTTATACACATCCAAAAGTAAAGGCCATAGAGCTTATGGTGGTGGATGCCCTGGTGAAAGCAAATGATTATCTACAGATATCATCTCACATTGAGGATCCAGCTGAATATTGGAAGTTAGATGACTCAATAATCAGAACTATTGAGACAGCTCCGAATGAAGAGCTAAAGGAGGCTAGGGACTTAATCCTGCGCATTAGGAGGAGAAATCTCTATCAGTTCTGCAATGAGTATGCTGTACCCAAGGAGCAAATGGGACATTTCAAAAACGTCACTGCTCAAGATATTGTTTGTTCTCAGACAAATGGAGGTGTTATATTGAAAGAGGAGGATGTTGCTGTTACCAACATCAGGATTGATTTGACTCGCGGAAGTCAAAATCCCCTTCAAAGCATCCACTTTTTCCAGGACTATGAGAGTAAGGAGAAATTCCCAATACGTGATGATCGCATTAGTCACTTGCTGCCTACATCGTATCAAGATTTGATAGTGAGGGTCTATTCGAAAAAGCCTGAGCTGGTTGGGCCAATCTCTGAGGCTTTCGAAAATTTCCAGGTAAAAACATATGGGGTCAAGGCACAAGTACATCCCACACCAGAGAAAAAGAAACGCCCTCGTGGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

467

Amino Acids

54.14

Weight (kDa)

6.82

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HD	PF01966	58 - 148	6.6e-11	HD domain
HD_assoc_2	PF19276	222 - 332	3.3e-07	HD associated region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40270 AT5G40270 AT5G40290
fragaria_vesca	FvH4_4g34540 FvH4_4g34540 FvH4_6g50610 FvH4_6g50610 FvH4_6g50610
malus_domestica	MD09G1034800.v1.1 MD16G1092000.v1.1
prunus_persica	Prupe.1G254300_v2.0.a1 Prupe.1G254300_v2.0.a1 Prupe.1G254300_v2.0.a1 Prupe.3G283700_v2.0.a1 Prupe.3G283700_v2.0.a1 Prupe.3G283700_v2.0.a1
pyrus_communis	pycom111g02770 pycom16g07850
rosa_chinensis	RchiOBHm_Chr2g0171401 RchiOBHm_Chr4g0443921
rosa_laevigata	RLG00000005877 RLG00000022010
rosa_multiflora	Rmu_co8513743.1_g000001 Rmu_sc0007646.1_g000008 Rmu_sc0030144.1_g000004
rosa_roxburghii	Rroxscaffold_2G00080690 Rroxscaffold_5G00384470
rosa_rugosa	Rorug02G0553800 Rorug02G0553800 Rorug04G0348200 Rorug04G0348200 Rorug04G0348200
rosa_samantha	Rh2AG628200 Rh2BG638600 Rh2CG607300 Rh2DG649600 Rh2DG655700 Rh4AG408800 Rh4BG419900 Rh4CG433900 Rh4DG414900
rosa_wichuraiana	Rw2G052030 Rw4G035110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	971
Acc36I	ACCTGC	1 cut(s)	281
AccBSI	CCGCTC	1 cut(s)	73
AccII	CGCG	1 cut(s)	1146
AciI	CCGC	3 cut(s)	71, 688, 1146
AclWI	GGATC	2 cut(s)	869, 882
AcoI	YGGCCR	3 cut(s)	59, 310, 583
AcsI	RAATTY	3 cut(s)	53, 1205, 1324
AfaI	GTAC	2 cut(s)	1017, 1362
AfiI	CCNNNNNNNGG	1 cut(s)	1128
AgsI	TTSAA	8 cut(s)	53, 82, 338, 518, 668, 1042, 1099, 1166
AjnI	CCWGG	6 cut(s)	154, 170, 544, 828, 1182, 1329
AluBI	AGCT	8 cut(s)	215, 542, 638, 811, 881, 929, 943, 1294
AluI	AGCT	8 cut(s)	215, 542, 638, 811, 881, 929, 943, 1294
Alw26I	GTCTC	5 cut(s)	40, 111, 248, 384, 917
AlwI	GGATC	2 cut(s)	869, 882
Ama87I	CYCGRG	1 cut(s)	756
AoxI	GGCC	6 cut(s)	59, 310, 317, 583, 801, 1301
ApeKI	GCWGC	1 cut(s)	1240
ApoI	RAATTY	3 cut(s)	53, 1205, 1324
ArsI	GACNNNNNNTTYG	2 cut(s)	735, 767
AseI	ATTAAT	1 cut(s)	674
Asp700I	GAANNNNTTC	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	972
AspS9I	GGNCC	2 cut(s)	317, 1301
AsuHPI	GGTGA	3 cut(s)	221, 724, 844
AsuII	TTCGAA	2 cut(s)	1280, 1320
AvaI	CYCGRG	1 cut(s)	756
BalI	TGGCCA	1 cut(s)	312
BamHI	GGATCC	1 cut(s)	874
BauI	CACGAG	1 cut(s)	1392
BbvI	GCAGC	1 cut(s)	1227
BceAI	ACGGC	2 cut(s)	38, 570
BciT130I	CCWGG	6 cut(s)	156, 172, 546, 830, 1184, 1331
BcoDI	GTCTC	5 cut(s)	40, 111, 248, 384, 917
BfaI	CTAG	2 cut(s)	539, 954
BfmI	CTRYAG	1 cut(s)	851
BfuAI	ACCTGC	1 cut(s)	281
BglII	AGATCT	1 cut(s)	705
BisI	GCNGC	1 cut(s)	1241
BlsI	GCNGC	1 cut(s)	1242
Bme1390I	CCNGG	6 cut(s)	156, 172, 546, 830, 1184, 1331
BmeT110I	CYCGRG	1 cut(s)	756
BmgT120I	GGNCC	2 cut(s)	317, 1301
BmiI	GGNNCC	2 cut(s)	370, 876
BmrFI	CCNGG	6 cut(s)	156, 172, 546, 830, 1184, 1331
BmsI	GCATC	3 cut(s)	436, 814, 1179
BpmI	CTGGAG	2 cut(s)	257, 528
Bpu10I	CCTNAGC	1 cut(s)	1290
Bpu14I	TTCGAA	2 cut(s)	1280, 1320
BpuEI	CTTGAG	1 cut(s)	1041
BsaAI	YACGTR	1 cut(s)	1217
BsaBI	GATNNNNATC	1 cut(s)	768
BsaI	GGTCTC	3 cut(s)	111, 248, 384
BsaJI	CCNNGG	6 cut(s)	155, 313, 353, 545, 828, 1020
Bsc4I	CCNNNNNNNGG	1 cut(s)	1128
Bse3DI	GCAATG	1 cut(s)	1009
Bse8I	GATNNNNATC	1 cut(s)	768
BseBI	CCWGG	6 cut(s)	156, 172, 546, 830, 1184, 1331
BseDI	CCNNGG	6 cut(s)	155, 313, 353, 545, 828, 1020
BseGI	GGATG	7 cut(s)	656, 703, 787, 829, 1114, 1170, 1363
BseJI	GATNNNNATC	1 cut(s)	768
BseLI	CCNNNNNNNGG	1 cut(s)	1128
BseMI	GCAATG	1 cut(s)	1009
BseMII	CTCAG	6 cut(s)	87, 159, 438, 1088, 1281, 1302
BseRI	GAGGAG	3 cut(s)	113, 994, 1118
BseXI	GCAGC	1 cut(s)	1227
BseYI	CCCAGC	1 cut(s)	646
Bsh1236I	CGCG	1 cut(s)	1146
BshFI	GGCC	6 cut(s)	61, 312, 319, 585, 803, 1303
BsiHKCI	CYCGRG	1 cut(s)	756
BsiSI	CCGG	1 cut(s)	58
BslFI	GGGAC	2 cut(s)	971, 1047
BslI	CCNNNNNNNGG	1 cut(s)	1128
BsmAI	GTCTC	5 cut(s)	40, 111, 248, 384, 917
BsmFI	GGGAC	2 cut(s)	971, 1047
BsmI	GAATGC	2 cut(s)	166, 181
BsnI	GGCC	6 cut(s)	61, 312, 319, 585, 803, 1303
Bso31I	GGTCTC	3 cut(s)	111, 248, 384
BsoBI	CYCGRG	1 cut(s)	756
Bsp119I	TTCGAA	2 cut(s)	1280, 1320
Bsp143I	GATC	4 cut(s)	268, 705, 874, 1222
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	3 cut(s)	71, 688, 1146
BspANI	GGCC	6 cut(s)	61, 312, 319, 585, 803, 1303
BspCNI	CTCAG	6 cut(s)	88, 158, 439, 1087, 1282, 1303
BspFNI	CGCG	1 cut(s)	1146
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	370, 876
BspMI	ACCTGC	1 cut(s)	281
BspPI	GGATC	2 cut(s)	869, 882
BspQI	GCTCTTC	1 cut(s)	933
BspT104I	TTCGAA	2 cut(s)	1280, 1320
BspTNI	GGTCTC	3 cut(s)	111, 248, 384
BsrBI	CCGCTC	1 cut(s)	73
BsrDI	GCAATG	1 cut(s)	1009
BssECI	CCNNGG	6 cut(s)	155, 313, 353, 545, 828, 1020
BssMI	GATC	4 cut(s)	268, 705, 874, 1222
BssSI	CACGAG	1 cut(s)	1392
BssT1I	CCWWGG	2 cut(s)	313, 1020
Bst2BI	CACGAG	1 cut(s)	1392
Bst2UI	CCWGG	6 cut(s)	156, 172, 546, 830, 1184, 1331
Bst4CI	ACNGT	5 cut(s)	48, 280, 716, 736, 778
Bst6I	CTCTTC	1 cut(s)	933
BstBAI	YACGTR	1 cut(s)	1217
BstBI	TTCGAA	2 cut(s)	1280, 1320
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	7 cut(s)	96, 113, 145, 447, 1074, 1290, 1311
BstDSI	CCRYGG	2 cut(s)	313, 353
BstF5I	GGATG	7 cut(s)	656, 703, 787, 829, 1114, 1170, 1363
BstFNI	CGCG	1 cut(s)	1146
BstHHI	GCGC	1 cut(s)	972
BstKTI	GATC	4 cut(s)	271, 708, 877, 1225
BstMAI	GTCTC	5 cut(s)	40, 111, 248, 384, 917
BstMBI	GATC	4 cut(s)	268, 705, 874, 1222
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 212, 1300
BstNI	CCWGG	6 cut(s)	156, 172, 546, 830, 1184, 1331
BstSCI	CCNGG	6 cut(s)	154, 170, 544, 828, 1182, 1329
BstSFI	CTRYAG	1 cut(s)	851
BstUI	CGCG	1 cut(s)	1146
BstV1I	GCAGC	1 cut(s)	1227
BstX2I	RGATCY	2 cut(s)	705, 874
BstYI	RGATCY	2 cut(s)	705, 874
BsuRI	GGCC	6 cut(s)	61, 312, 319, 585, 803, 1303
BtgI	CCRYGG	2 cut(s)	313, 353
BtsCI	GGATG	7 cut(s)	656, 703, 787, 829, 1114, 1170, 1363
BtsI	GCAGTG	1 cut(s)	1050
BtsIMutI	CAGTG	1 cut(s)	1050
BveI	ACCTGC	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	204
CciI	TCATGA	1 cut(s)	382
CfoI	GCGC	1 cut(s)	972
Cfr13I	GGNCC	2 cut(s)	317, 1301
Csp6I	GTAC	2 cut(s)	1016, 1361
CviAII	CATG	3 cut(s)	302, 314, 383
CviQI	GTAC	2 cut(s)	1016, 1361
DdeI	CTNAG	7 cut(s)	96, 113, 145, 447, 1074, 1290, 1311
DpnI	GATC	4 cut(s)	270, 707, 876, 1224
DpnII	GATC	4 cut(s)	268, 705, 874, 1222
EaeI	YGGCCR	3 cut(s)	59, 310, 583
Eam1104I	CTCTTC	1 cut(s)	933
EarI	CTCTTC	1 cut(s)	933
Eco130I	CCWWGG	2 cut(s)	313, 1020
Eco31I	GGTCTC	3 cut(s)	111, 248, 384
Eco32I	GATATC	1 cut(s)	858
Eco88I	CYCGRG	1 cut(s)	756
EcoRI	GAATTC	1 cut(s)	53
EcoRII	CCWGG	6 cut(s)	154, 170, 544, 828, 1182, 1329
EcoRV	GATATC	1 cut(s)	858
EcoT14I	CCWWGG	2 cut(s)	313, 1020
ErhI	CCWWGG	2 cut(s)	313, 1020
FaeI	CATG	3 cut(s)	305, 317, 386
FaqI	GGGAC	2 cut(s)	971, 1047
FatI	CATG	3 cut(s)	301, 313, 382
FauI	CCCGC	1 cut(s)	681
FauNDI	CATATG	1 cut(s)	1342
Fnu4HI	GCNGC	1 cut(s)	1241
FokI	GGATG	7 cut(s)	663, 710, 774, 836, 1121, 1157, 1350
Fsp4HI	GCNGC	1 cut(s)	1241
FspBI	CTAG	2 cut(s)	539, 954
FspI	TGCGCA	1 cut(s)	971
GlaI	GCGC	1 cut(s)	971
GluI	GCNGC	1 cut(s)	1241
GsaI	CCCAGC	1 cut(s)	650
GsuI	CTGGAG	2 cut(s)	257, 528
HaeIII	GGCC	6 cut(s)	61, 312, 319, 585, 803, 1303
HapII	CCGG	1 cut(s)	58
HhaI	GCGC	1 cut(s)	972
Hin1II	CATG	3 cut(s)	305, 317, 386
Hin6I	GCGC	1 cut(s)	970
HinP1I	GCGC	1 cut(s)	970
HinfI	GANTC	2 cut(s)	902, 1141
HpaII	CCGG	1 cut(s)	58
HphI	GGTGA	3 cut(s)	221, 724, 844
Hpy166II	GTNNAC	2 cut(s)	604, 739
Hpy188III	TCNNGA	6 cut(s)	245, 274, 383, 1058, 1129, 1256
Hpy8I	GTNNAC	2 cut(s)	604, 739
Hpy99I	CGWCG	1 cut(s)	24
HpyAV	CCTTC	1 cut(s)	1172
HpyCH4III	ACNGT	5 cut(s)	48, 280, 716, 736, 778
HpyCH4IV	ACGT	2 cut(s)	1047, 1216
HpyCH4V	TGCA	5 cut(s)	166, 290, 301, 500, 1002
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 212, 1300
HpyF3I	CTNAG	7 cut(s)	96, 113, 145, 447, 1074, 1290, 1311
HpySE526I	ACGT	2 cut(s)	1047, 1216
Hsp92II	CATG	3 cut(s)	305, 317, 386
HspAI	GCGC	1 cut(s)	970
Kzo9I	GATC	4 cut(s)	268, 705, 874, 1222
LguI	GCTCTTC	1 cut(s)	933
LmnI	GCTCC	3 cut(s)	547, 934, 1024
Lsp1109I	GCAGC	1 cut(s)	1227
LweI	GCATC	3 cut(s)	436, 814, 1179
MaeI	CTAG	2 cut(s)	539, 954
MaeII	ACGT	2 cut(s)	1047, 1216
MaeIII	GTNAC	8 cut(s)	136, 326, 626, 653, 751, 1048, 1117, 1232
MalI	GATC	4 cut(s)	270, 707, 876, 1224
MbiI	CCGCTC	1 cut(s)	73
MboI	GATC	4 cut(s)	268, 705, 874, 1222
MboII	GAAGA	2 cut(s)	341, 950
MflI	RGATCY	2 cut(s)	705, 874
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	8 cut(s)	53, 232, 285, 534, 570, 743, 1205, 1324
MluNI	TGGCCA	1 cut(s)	312
MlyI	GAGTC	2 cut(s)	896, 1135
Mox20I	TGGCCA	1 cut(s)	312
MroXI	GAANNNNTTC	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	6 cut(s)	399, 420, 456, 465, 674, 962
Msp20I	TGGCCA	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	881
MspI	CCGG	1 cut(s)	58
MspR9I	CCNGG	6 cut(s)	156, 172, 546, 830, 1184, 1331
Mva1269I	GAATGC	2 cut(s)	166, 181
MvaI	CCWGG	6 cut(s)	156, 172, 546, 830, 1184, 1331
MvnI	CGCG	1 cut(s)	1146
MwoI	GCNNNNNNNGC	3 cut(s)	22, 212, 1300
NcoI	CCATGG	1 cut(s)	313
NdeI	CATATG	1 cut(s)	1342
NdeII	GATC	4 cut(s)	268, 705, 874, 1222
NlaIII	CATG	3 cut(s)	305, 317, 386
NlaIV	GGNNCC	2 cut(s)	370, 876
NmeAIII	GCCGAG	1 cut(s)	659
NmuCI	GTSAC	6 cut(s)	136, 326, 626, 751, 1048, 1232
NsbI	TGCGCA	1 cut(s)	971
NspV	TTCGAA	2 cut(s)	1280, 1320
PagI	TCATGA	1 cut(s)	382
PciSI	GCTCTTC	1 cut(s)	933
PctI	GAATGC	2 cut(s)	166, 181
PdmI	GAANNNNTTC	1 cut(s)	216
PfoI	TCCNGGA	1 cut(s)	1182
PkrI	GCNGC	1 cut(s)	1242
PleI	GAGTC	2 cut(s)	896, 1135
PpsI	GAGTC	2 cut(s)	896, 1135
Ppu21I	YACGTR	1 cut(s)	1217
PshBI	ATTAAT	1 cut(s)	674
Psp6I	CCWGG	6 cut(s)	154, 170, 544, 828, 1182, 1329
PspFI	CCCAGC	1 cut(s)	646
PspGI	CCWGG	6 cut(s)	154, 170, 544, 828, 1182, 1329
PspN4I	GGNNCC	2 cut(s)	370, 876
PspPI	GGNCC	2 cut(s)	317, 1301
PsrI	GAACNNNNNNTAC	2 cut(s)	766, 798
PsuI	RGATCY	2 cut(s)	705, 874
PvuII	CAGCTG	1 cut(s)	881
RsaI	GTAC	2 cut(s)	1017, 1362
RsaNI	GTAC	2 cut(s)	1016, 1361
SapI	GCTCTTC	1 cut(s)	933
SaqAI	TTAA	6 cut(s)	399, 420, 456, 465, 674, 962
SatI	GCNGC	1 cut(s)	1241
Sau3AI	GATC	4 cut(s)	268, 705, 874, 1222
Sau96I	GGNCC	2 cut(s)	317, 1301
SchI	GAGTC	2 cut(s)	896, 1135
ScrFI	CCNGG	6 cut(s)	156, 172, 546, 830, 1184, 1331
SfaNI	GCATC	3 cut(s)	436, 814, 1179
SfcI	CTRYAG	1 cut(s)	851
SfuI	TTCGAA	2 cut(s)	1280, 1320
SmlI	CTYRAG	1 cut(s)	1056
SmoI	CTYRAG	1 cut(s)	1056
Sse9I	AATT	8 cut(s)	53, 232, 285, 534, 570, 743, 1205, 1324
SsiI	CCGC	3 cut(s)	71, 688, 1146
SspI	AATATT	1 cut(s)	887
SspMI	CTAG	2 cut(s)	539, 954
StyD4I	CCNGG	6 cut(s)	154, 170, 544, 828, 1182, 1329
StyI	CCWWGG	2 cut(s)	313, 1020
TaaI	ACNGT	5 cut(s)	48, 280, 716, 736, 778
TaiI	ACGT	2 cut(s)	1050, 1219
TaqI	TCGA	4 cut(s)	246, 772, 1280, 1320
TasI	AATT	8 cut(s)	53, 232, 285, 534, 570, 743, 1205, 1324
TatI	WGTACW	1 cut(s)	1360
Tru1I	TTAA	6 cut(s)	399, 420, 456, 465, 674, 962
Tru9I	TTAA	6 cut(s)	399, 420, 456, 465, 674, 962
TscAI	CASTG	1 cut(s)	1057
TseFI	GTSAC	6 cut(s)	136, 326, 626, 751, 1048, 1232
TseI	GCWGC	1 cut(s)	1240
Tsp45I	GTSAC	6 cut(s)	136, 326, 626, 751, 1048, 1232
TspDTI	ATGAA	2 cut(s)	582, 951
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	1 cut(s)	1057
VspI	ATTAAT	1 cut(s)	674
XapI	RAATTY	3 cut(s)	53, 1205, 1324
XcmI	CCANNNNNNNNNTGG	3 cut(s)	811, 885, 1027
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	2 cut(s)	539, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.