FvH4_6g50610

Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
37640172 .. 37644862
4691 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50610.t2

Sequence Viewer

Length: 1413 bp
ATGGGGGCTTACAACAACGACGGCGTTTTGTTGTCTCCGATATACTGTTCCGGCCAAGACCTCCGGTTCTCCAAGCACGTCCACGACAATGTCCACGGCAACATTTATCTCGATCCGCTTTCTTTGAAATTTATTGATACTGAGGAGTTTCAGAGGCTTAGAGACCTGAAACAACTCGGAGTGACGAACTCAGTTTTTCCTGGTGCTGTGCATTCCCGGTTTGAGCATTCGCTCGGTGTCTATTGGCTTGCTGGTGAAGCTGTTCAGGGGCTCAAAAATTATCAGGGTCTTGAACTGGATATCGACCGCTTTGATCTCCAGACGGTAAAAATTGCAGGTCTATTGCATGATGTTGGTCATGGACCTTTCAGTCACTTGTTTGAACGCGAGTTTCTTCCACGGGTTCAGAGTGGCTGCCATTGGTCTCATGAGGATATGTCAGTTAAGATGATTGACCACATTGTTAATCAGCATCATATTGATATTGACCCTGAGATGATTAAAAGAGTTAAGGAGATGATACTTGCTTCTGGAACTGCTATGCCAATAACATCCAGGGAGAAGCCTTTTCTGTATGAAATTGTGGCAAATGGCCGTAATGGTATTGATGTGGACAAGTTTGATTATATTGTCCGTGACAGCAGAGCTTGTGGGCTTGGATGCAACTTTGAGTTTAAAAGATTAATGGAAACAATGCGTGTTTTGGATGGTGAGATCTGCTACCGTGCTAAGGAGTATCTCACTGTCCACAAATTATTTGTCACTCGAGCGGATTTGTATCGAACAGTTTATACACATCCAAAAGTAAAGGCCATAGAGCTTATGGTGGTGGATGCCCTGGTGAAAGCAAATGATTATCTACAGATATCATCTCACATTGAGGATCCAGCTGAATATTGGAAGTTAGATGACTCAATAATCAAAACTATTGAGACAGCTCCAAATGAAGAGCTGAAGGAAGCTAGGGACTTAATCCTGCGCATTAGGAGGAGAAATCTCTATCAGTTCTGCAATGAGTATGCCGTACCCAAGGAGCAAATGGAACATTTCAAAAAAGTCACTGCTCAAGATATTGTTTGTTCTCAGAAAAATGGAGGTGTTATATTGAAAGAGGAGGATGTTGCTGTTACCAACATCAAGATTGATTTGACTCGTGGAAGTCAAAATCCCCTTCAAAGTATCAGCTTTTTCCAGGACTATGAAAGTAAGGAGAAATTCCCAATACGTGATGATCGCATTAGTCACTTGCTTCCTACATCGTATCAAGATTTGATAGTGAGGGTCTATTCGAAAAAGCCTGAGCTGGTTGGGCCAATCTCTGAGGCTTTTGAAAACTTCCAGCTGAAAACATATGGGATCAAGGCACAAGTATGTCCCACTCCAGAGAAAAAGAAACGCCCTCGTTGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

471

Amino Acids

54.23

Weight (kDa)

6.43

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HD PF01966 73 - 165 4e-11 HD domain
HD_assoc_2 PF19276 225 - 335 3.4e-07 HD associated region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 369
Acc16I TGCGCA 1 cut(s) 980
Acc36I ACCTGC 1 cut(s) 326
AccBSI CCGCTC 1 cut(s) 770
AccII CGCG 1 cut(s) 387
AciI CCGC 3 cut(s) 116, 307, 770
AclWI GGATC 4 cut(s) 107, 878, 891, 1364
AcoI YGGCCR 2 cut(s) 52, 592
AcsI RAATTY 2 cut(s) 128, 1214
AcuI CTGAAG 1 cut(s) 974
AfaI GTAC 1 cut(s) 1026
AfiI CCNNNNNNNGG 1 cut(s) 730
AgsI TTSAA 7 cut(s) 127, 293, 383, 1051, 1108, 1175, 1331
AjiI CACGTC 1 cut(s) 79
AjnI CCWGG 4 cut(s) 199, 554, 837, 1191
Alw26I GTCTC 4 cut(s) 39, 156, 429, 926
AlwI GGATC 4 cut(s) 107, 878, 891, 1364
Ama87I CYCGRG 1 cut(s) 765
AoxI GGCC 4 cut(s) 52, 592, 810, 1310
ApeKI GCWGC 1 cut(s) 414
ApoI RAATTY 2 cut(s) 128, 1214
ArsI GACNNNNNNTTYG 2 cut(s) 744, 776
AseI ATTAAT 1 cut(s) 683
Asp700I GAANNNNTTC 1 cut(s) 261
AspLEI GCGC 1 cut(s) 981
AspS9I GGNCC 2 cut(s) 362, 1310
AsuC2I CCSGG 1 cut(s) 217
AsuHPI GGTGA 3 cut(s) 266, 722, 853
AsuII TTCGAA 1 cut(s) 1289
AvaI CYCGRG 1 cut(s) 765
AvaII GGWCC 1 cut(s) 362
BamHI GGATCC 1 cut(s) 883
BanII GRGCYC 1 cut(s) 273
BauI CACGAG 1 cut(s) 1152
BbvI GCAGC 1 cut(s) 401
BccI CCATC 1 cut(s) 701
BceAI ACGGC 4 cut(s) 37, 112, 579, 1007
BciT130I CCWGG 4 cut(s) 201, 556, 839, 1193
BcnI CCSGG 1 cut(s) 217
BcoDI GTCTC 4 cut(s) 39, 156, 429, 926
BfaI CTAG 1 cut(s) 963
BfmI CTRYAG 1 cut(s) 860
BfuAI ACCTGC 1 cut(s) 326
BglII AGATCT 1 cut(s) 714
BisI GCNGC 1 cut(s) 415
BlsI GCNGC 1 cut(s) 416
Bme1390I CCNGG 5 cut(s) 201, 217, 556, 839, 1193
Bme18I GGWCC 1 cut(s) 362
BmeT110I CYCGRG 1 cut(s) 765
BmgBI CACGTC 1 cut(s) 79
BmgT120I GGNCC 2 cut(s) 362, 1310
BmiI GGNNCC 1 cut(s) 885
BmrFI CCNGG 5 cut(s) 201, 217, 556, 839, 1193
BmsI GCATC 3 cut(s) 481, 650, 823
BpmI CTGGAG 2 cut(s) 302, 1365
Bpu10I CCTNAGC 2 cut(s) 729, 1299
Bpu14I TTCGAA 1 cut(s) 1289
BpuEI CTTGAG 1 cut(s) 1050
BpuMI CCSGG 1 cut(s) 217
BsaAI YACGTR 1 cut(s) 1226
BsaBI GATNNNNATC 1 cut(s) 777
BsaI GGTCTC 2 cut(s) 156, 429
BsaJI CCNNGG 5 cut(s) 94, 398, 555, 837, 1029
BsaWI WCCGGW 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 730
Bse1I ACTGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 1018
Bse8I GATNNNNATC 1 cut(s) 777
BseBI CCWGG 4 cut(s) 201, 556, 839, 1193
BseDI CCNNGG 5 cut(s) 94, 398, 555, 837, 1029
BseGI GGATG 6 cut(s) 551, 665, 712, 796, 838, 1123
BseJI GATNNNNATC 1 cut(s) 777
BseLI CCNNNNNNNGG 1 cut(s) 730
BseMI GCAATG 1 cut(s) 1018
BseMII CTCAG 6 cut(s) 132, 204, 483, 1097, 1290, 1311
BseNI ACTGG 1 cut(s) 300
BseRI GAGGAG 3 cut(s) 158, 1003, 1127
BseXI GCAGC 1 cut(s) 401
Bsh1236I CGCG 1 cut(s) 387
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 4 cut(s) 54, 594, 812, 1312
BsiEI CGRYCG 1 cut(s) 307
BsiHKCI CYCGRG 1 cut(s) 765
BsiSI CCGG 3 cut(s) 51, 64, 217
BslFI GGGAC 2 cut(s) 980, 1359
BslI CCNNNNNNNGG 1 cut(s) 730
BsmAI GTCTC 4 cut(s) 39, 156, 429, 926
BsmFI GGGAC 2 cut(s) 980, 1359
BsmI GAATGC 2 cut(s) 211, 226
BsnI GGCC 4 cut(s) 54, 594, 812, 1312
Bso31I GGTCTC 2 cut(s) 156, 429
BsoBI CYCGRG 1 cut(s) 765
Bsp119I TTCGAA 1 cut(s) 1289
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 6 cut(s) 112, 313, 714, 883, 1231, 1356
BspACI CCGC 3 cut(s) 116, 307, 770
BspANI GGCC 4 cut(s) 54, 594, 812, 1312
BspCNI CTCAG 6 cut(s) 133, 203, 484, 1096, 1291, 1312
BspFNI CGCG 1 cut(s) 387
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 1 cut(s) 885
BspMI ACCTGC 1 cut(s) 326
BspPI GGATC 4 cut(s) 107, 878, 891, 1364
BspQI GCTCTTC 1 cut(s) 942
BspT104I TTCGAA 1 cut(s) 1289
BspTNI GGTCTC 2 cut(s) 156, 429
BsrBI CCGCTC 1 cut(s) 770
BsrDI GCAATG 1 cut(s) 1018
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 5 cut(s) 94, 398, 555, 837, 1029
BssMI GATC 6 cut(s) 112, 313, 714, 883, 1231, 1356
BssSI CACGAG 1 cut(s) 1152
BssT1I CCWWGG 1 cut(s) 1029
Bst2BI CACGAG 1 cut(s) 1152
Bst2UI CCWGG 4 cut(s) 201, 556, 839, 1193
Bst4CI ACNGT 5 cut(s) 47, 325, 725, 745, 787
Bst6I CTCTTC 1 cut(s) 942
BstBAI YACGTR 1 cut(s) 1226
BstBI TTCGAA 1 cut(s) 1289
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 8 cut(s) 141, 158, 190, 492, 729, 1083, 1299, 1320
BstDSI CCRYGG 2 cut(s) 94, 398
BstF5I GGATG 6 cut(s) 551, 665, 712, 796, 838, 1123
BstFNI CGCG 1 cut(s) 387
BstHHI GCGC 1 cut(s) 981
BstKTI GATC 6 cut(s) 115, 316, 717, 886, 1234, 1359
BstMAI GTCTC 4 cut(s) 39, 156, 429, 926
BstMBI GATC 6 cut(s) 112, 313, 714, 883, 1231, 1356
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 2 cut(s) 257, 1309
BstNI CCWGG 4 cut(s) 201, 556, 839, 1193
BstSCI CCNGG 5 cut(s) 199, 215, 554, 837, 1191
BstSFI CTRYAG 1 cut(s) 860
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 1 cut(s) 401
BstX2I RGATCY 2 cut(s) 714, 883
BstYI RGATCY 2 cut(s) 714, 883
BsuRI GGCC 4 cut(s) 54, 594, 812, 1312
BtgI CCRYGG 2 cut(s) 94, 398
BtrI CACGTC 1 cut(s) 79
BtsCI GGATG 6 cut(s) 551, 665, 712, 796, 838, 1123
BtsI GCAGTG 1 cut(s) 1059
BtsIMutI CAGTG 2 cut(s) 741, 1059
BveI ACCTGC 1 cut(s) 326
Cac8I GCNNGC 1 cut(s) 249
CciI TCATGA 1 cut(s) 427
CfoI GCGC 1 cut(s) 981
Cfr13I GGNCC 2 cut(s) 362, 1310
Csp6I GTAC 1 cut(s) 1025
CviAII CATG 3 cut(s) 347, 359, 428
CviQI GTAC 1 cut(s) 1025
DdeI CTNAG 8 cut(s) 141, 158, 190, 492, 729, 1083, 1299, 1320
DpnI GATC 6 cut(s) 114, 315, 716, 885, 1233, 1358
DpnII GATC 6 cut(s) 112, 313, 714, 883, 1231, 1356
DraI TTTAAA 1 cut(s) 676
DrdI GACNNNNNNGTC 1 cut(s) 369
DseDI GACNNNNNNGTC 1 cut(s) 369
EaeI YGGCCR 2 cut(s) 52, 592
Eam1104I CTCTTC 1 cut(s) 942
EarI CTCTTC 1 cut(s) 942
Eco130I CCWWGG 1 cut(s) 1029
Eco24I GRGCYC 1 cut(s) 273
Eco31I GGTCTC 2 cut(s) 156, 429
Eco32I GATATC 2 cut(s) 301, 867
Eco47I GGWCC 1 cut(s) 362
Eco57I CTGAAG 1 cut(s) 974
Eco88I CYCGRG 1 cut(s) 765
EcoRII CCWGG 4 cut(s) 199, 554, 837, 1191
EcoRV GATATC 2 cut(s) 301, 867
EcoT14I CCWWGG 1 cut(s) 1029
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 1029
FaeI CATG 3 cut(s) 350, 362, 431
FaqI GGGAC 2 cut(s) 980, 1359
FatI CATG 3 cut(s) 346, 358, 427
FauNDI CATATG 1 cut(s) 1351
Fnu4HI GCNGC 1 cut(s) 415
FokI GGATG 6 cut(s) 538, 672, 719, 783, 845, 1130
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 415
FspBI CTAG 1 cut(s) 963
FspI TGCGCA 1 cut(s) 980
GlaI GCGC 1 cut(s) 980
GluI GCNGC 1 cut(s) 415
GsuI CTGGAG 2 cut(s) 302, 1365
HaeIII GGCC 4 cut(s) 54, 594, 812, 1312
HapII CCGG 3 cut(s) 51, 64, 217
HhaI GCGC 1 cut(s) 981
Hin1II CATG 3 cut(s) 350, 362, 431
Hin6I GCGC 1 cut(s) 979
HinP1I GCGC 1 cut(s) 979
HinfI GANTC 2 cut(s) 911, 1150
HpaII CCGG 3 cut(s) 51, 64, 217
HphI GGTGA 3 cut(s) 266, 722, 853
Hpy166II GTNNAC 4 cut(s) 82, 94, 613, 748
Hpy188I TCNGA 6 cut(s) 39, 153, 179, 408, 1086, 1321
Hpy188III TCNNGA 9 cut(s) 110, 290, 319, 428, 531, 1067, 1138, 1265, 1382
Hpy8I GTNNAC 4 cut(s) 82, 94, 613, 748
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 949, 1181
HpyCH4III ACNGT 5 cut(s) 47, 325, 725, 745, 787
HpyCH4IV ACGT 2 cut(s) 78, 1225
HpyCH4V TGCA 5 cut(s) 211, 335, 346, 663, 1011
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 1309
HpyF3I CTNAG 8 cut(s) 141, 158, 190, 492, 729, 1083, 1299, 1320
HpySE526I ACGT 2 cut(s) 78, 1225
Hsp92II CATG 3 cut(s) 350, 362, 431
HspAI GCGC 1 cut(s) 979
Kzo9I GATC 6 cut(s) 112, 313, 714, 883, 1231, 1356
LguI GCTCTTC 1 cut(s) 942
LmnI GCTCC 2 cut(s) 943, 1033
Lsp1109I GCAGC 1 cut(s) 401
LweI GCATC 3 cut(s) 481, 650, 823
MaeI CTAG 1 cut(s) 963
MaeII ACGT 2 cut(s) 78, 1225
MaeIII GTNAC 7 cut(s) 181, 371, 635, 760, 1057, 1126, 1241
MalI GATC 6 cut(s) 114, 315, 716, 885, 1233, 1358
MbiI CCGCTC 1 cut(s) 770
MboI GATC 6 cut(s) 112, 313, 714, 883, 1231, 1356
MboII GAAGA 2 cut(s) 386, 959
MflI RGATCY 2 cut(s) 714, 883
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 6 cut(s) 128, 277, 330, 579, 752, 1214
MlyI GAGTC 2 cut(s) 905, 1144
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 7 cut(s) 444, 465, 501, 510, 675, 683, 971
MslI CAYNNNNRTG 2 cut(s) 87, 1369
MspA1I CMGCKG 2 cut(s) 890, 1342
MspI CCGG 3 cut(s) 51, 64, 217
MspR9I CCNGG 5 cut(s) 201, 217, 556, 839, 1193
Mva1269I GAATGC 2 cut(s) 211, 226
MvaI CCWGG 4 cut(s) 201, 556, 839, 1193
MvnI CGCG 1 cut(s) 387
MwoI GCNNNNNNNGC 2 cut(s) 257, 1309
NciI CCSGG 1 cut(s) 217
NdeI CATATG 1 cut(s) 1351
NdeII GATC 6 cut(s) 112, 313, 714, 883, 1231, 1356
NlaIII CATG 3 cut(s) 350, 362, 431
NlaIV GGNNCC 1 cut(s) 885
NmuCI GTSAC 6 cut(s) 181, 371, 635, 760, 1057, 1241
NsbI TGCGCA 1 cut(s) 980
NspV TTCGAA 1 cut(s) 1289
PaeR7I CTCGAG 1 cut(s) 765
PagI TCATGA 1 cut(s) 427
PciSI GCTCTTC 1 cut(s) 942
PctI GAATGC 2 cut(s) 211, 226
PdmI GAANNNNTTC 1 cut(s) 261
PflFI GACNNNGTC 1 cut(s) 89
PfoI TCCNGGA 1 cut(s) 1191
PkrI GCNGC 1 cut(s) 416
PleI GAGTC 2 cut(s) 905, 1144
PpsI GAGTC 2 cut(s) 905, 1144
Ppu21I YACGTR 1 cut(s) 1226
PshBI ATTAAT 1 cut(s) 683
Psp6I CCWGG 4 cut(s) 199, 554, 837, 1191
PspGI CCWGG 4 cut(s) 199, 554, 837, 1191
PspN4I GGNNCC 1 cut(s) 885
PspPI GGNCC 2 cut(s) 362, 1310
PspXI VCTCGAGB 1 cut(s) 765
PsrI GAACNNNNNNTAC 2 cut(s) 775, 807
PsuI RGATCY 2 cut(s) 714, 883
PsyI GACNNNGTC 1 cut(s) 89
PvuII CAGCTG 2 cut(s) 890, 1342
RsaI GTAC 1 cut(s) 1026
RsaNI GTAC 1 cut(s) 1025
RseI CAYNNNNRTG 2 cut(s) 87, 1369
SapI GCTCTTC 1 cut(s) 942
SaqAI TTAA 7 cut(s) 444, 465, 501, 510, 675, 683, 971
SatI GCNGC 1 cut(s) 415
Sau3AI GATC 6 cut(s) 112, 313, 714, 883, 1231, 1356
Sau96I GGNCC 2 cut(s) 362, 1310
SchI GAGTC 2 cut(s) 905, 1144
ScrFI CCNGG 5 cut(s) 201, 217, 556, 839, 1193
SduI GDGCHC 1 cut(s) 273
SfaNI GCATC 3 cut(s) 481, 650, 823
SfcI CTRYAG 1 cut(s) 860
Sfr274I CTCGAG 1 cut(s) 765
SfuI TTCGAA 1 cut(s) 1289
SinI GGWCC 1 cut(s) 362
SlaI CTCGAG 1 cut(s) 765
SmiMI CAYNNNNRTG 2 cut(s) 87, 1369
SmlI CTYRAG 2 cut(s) 765, 1065
SmoI CTYRAG 2 cut(s) 765, 1065
Sse9I AATT 6 cut(s) 128, 277, 330, 579, 752, 1214
SsiI CCGC 3 cut(s) 116, 307, 770
SspI AATATT 1 cut(s) 896
SspMI CTAG 1 cut(s) 963
StyD4I CCNGG 5 cut(s) 199, 215, 554, 837, 1191
StyI CCWWGG 1 cut(s) 1029
TaaI ACNGT 5 cut(s) 47, 325, 725, 745, 787
TaiI ACGT 2 cut(s) 81, 1228
TaqI TCGA 5 cut(s) 111, 303, 766, 781, 1289
TasI AATT 6 cut(s) 128, 277, 330, 579, 752, 1214
Tru1I TTAA 7 cut(s) 444, 465, 501, 510, 675, 683, 971
Tru9I TTAA 7 cut(s) 444, 465, 501, 510, 675, 683, 971
TscAI CASTG 2 cut(s) 748, 1066
TseFI GTSAC 6 cut(s) 181, 371, 635, 760, 1057, 1241
TseI GCWGC 1 cut(s) 414
Tsp45I GTSAC 6 cut(s) 181, 371, 635, 760, 1057, 1241
TspDTI ATGAA 3 cut(s) 591, 960, 1215
TspGWI ACGGA 1 cut(s) 623
TspRI CASTG 2 cut(s) 748, 1066
Tth111I GACNNNGTC 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 362
VspI ATTAAT 1 cut(s) 683
XapI RAATTY 2 cut(s) 128, 1214
XcmI CCANNNNNNNNNTGG 3 cut(s) 820, 894, 1036
XhoI CTCGAG 1 cut(s) 765
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.