Rh4BG419900

4Fe-4S single cluster domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
56589480 .. 56595525
6046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG419900.1

Sequence Viewer

Length: 1401 bp
ATGGCGGCTATGGCGAACGACTTTCAGGATCGCCGGAATTTGAAGCTAGTTCACGATAACGTTCACGGCATCGTCTACCTCGAGCCGCTCTCCTTGAATTTTATTGACACTGAACAGTTTCAGAGGCTTCGTGATCTGAAGCAACTTGGTCTGACCAGCATGGTTTACCCTGGAGCTGTACATTCTAGATTTGAGCATTCACTTGGGGTATATTGGCTTGCTGGTGAAGCTATCAATAAAATCAAAACTTACCAAGGCGAGGAGCTTGGAATTGACAGCTTTGATGTGAGAACAGTAAAACTTGCTGGACTACTGCATGATATTGGCCATGGGCCTTTCAGCCACATGTTTGAGAGCGCGTTTCTTCCTCGGGTTCATTCTGGTGACAAATGGTTCCATGAGGATATGTCTGTGAAGATGATTGACTACATTGTCGACGAGCACCACATTGACATGGATTCTGAAGAGCTAAAGAGAGTGAAGGACCTGATCCTGGCTAGCTCTAAACATGTGGCACAGAATGCTGCACCAGAAAAGCGGTTCTTGTATGATATTGTTGCTAATGGACGCACTGGAATAGATGTTGACAAGTTTGATTACATTGAACGTGACTCCCGTGCCTGTGGCATAGGCTGTAATTTTCACTTTGAGAGGCTGATGGAAACCATGCGAGTTATGGAGGATGAGATATGTTACCGTGCTAGTGAATATCTGACAATCAACAAGCTGTTTATGACTCGGGCTAATCTGCATCGGACTGTCTATACGCATGCAAAAGTGAAGGCTATTGAACTCATGGCCGTTGATGTTCTGTGCAAAGCAAATGCTGAACTTGGGATTGCAGACTCCATTCACAAACCATCTGAATTCTGGAAGTTAGATGATTCAATTCTGAAAAAAATTGAAACGTCTGACAACCCTGAACTGAAGGAGGCAAAGGATTTGATCTTACGCATTCGAAGAAGGGATCTCTACCAGTTCTGCAATGAGTTAACTGTTCCAAAGGACAGACTACATAACTTCAACGATATTACAGCCAAAGATATAATTTGTTCTCAGAAAGCTGGCAATGTTACGCTACAGGAGGAAGATGTGGTTGTGATCACTGTTAAAATTGATTGGACTAATGACAGGAACAGCCCTCTTGAAAGAGTCCATTTCTTCAATGACTATGAGAGTACTGATAAATTCCGAATCCAAGTTGATGGTGTAAGTCACTTGCTTCCTGCATTTTATCAAGACAAGATAGTCAGGGTCTACTCCAAGAAGCCGAACCTGGTTGCAGCAGTTGCAGATGCTTTTGAGAATTATCAGCTGAAGACATATGGGAGGATGGTACAAGTACATTCAACTCCGGAGAAAAAGAAAAAAAGAACTGCACGAAGCTTAGCGCTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

466

Amino Acids

53.83

Weight (kDa)

6.38

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HD PF01966 63 - 155 6.3e-11 HD domain
HD_assoc_2 PF19276 216 - 327 1.6e-06 HD associated region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 431, 1247
AccBSI CCGCTC 1 cut(s) 88
AccI GTMKAC 3 cut(s) 75, 435, 1257
AccII CGCG 1 cut(s) 359
AccIII TCCGGA 1 cut(s) 1354
AciI CCGC 3 cut(s) 5, 86, 538
AclI AACGTT 1 cut(s) 60
AclWI GGATC 3 cut(s) 36, 484, 975
AcoI YGGCCR 2 cut(s) 325, 798
AcsI RAATTY 4 cut(s) 37, 97, 866, 1187
AcuI CTGAAG 4 cut(s) 158, 483, 947, 1337
AfaI GTAC 4 cut(s) 180, 1180, 1338, 1344
AfeI AGCGCT 1 cut(s) 1392
AfiI CCNNNNNNNGG 2 cut(s) 259, 493
AflIII ACRYGT 2 cut(s) 345, 508
AjnI CCWGG 3 cut(s) 169, 492, 1275
Alw21I GWGCWC 1 cut(s) 444
AlwI GGATC 3 cut(s) 36, 484, 975
Ama87I CYCGRG 3 cut(s) 80, 369, 738
Aor13HI TCCGGA 1 cut(s) 1354
Aor51HI AGCGCT 1 cut(s) 1392
AoxI GGCC 3 cut(s) 325, 332, 798
ApeKI GCWGC 3 cut(s) 524, 1283, 1393
ApoI RAATTY 4 cut(s) 37, 97, 866, 1187
Asp700I GAANNNNTTC 1 cut(s) 117
AspLEI GCGC 2 cut(s) 359, 1393
AspS9I GGNCC 2 cut(s) 332, 484
AsuHPI GGTGA 2 cut(s) 236, 395
AsuII TTCGAA 1 cut(s) 958
AsuNHI GCTAGC 1 cut(s) 497
AvaI CYCGRG 3 cut(s) 80, 369, 738
AvaII GGWCC 1 cut(s) 484
BalI TGGCCA 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 1325
Bbv12I GWGCWC 1 cut(s) 444
BbvI GCAGC 3 cut(s) 511, 1295, 1380
BccI CCATC 4 cut(s) 652, 868, 1199, 1327
BceAI ACGGC 2 cut(s) 82, 785
BciT130I CCWGG 3 cut(s) 171, 494, 1277
BclI TGATCA 1 cut(s) 1101
BfaI CTAG 4 cut(s) 47, 186, 498, 702
BfmI CTRYAG 2 cut(s) 1079, 1394
BfoI RGCGCY 1 cut(s) 1394
BisI GCNGC 5 cut(s) 6, 86, 525, 1284, 1394
BlpI GCTNAGC 1 cut(s) 1387
BlsI GCNGC 5 cut(s) 7, 87, 526, 1285, 1395
BmcAI AGTACT 1 cut(s) 1180
Bme1390I CCNGG 3 cut(s) 171, 494, 1277
Bme18I GGWCC 1 cut(s) 484
BmeT110I CYCGRG 3 cut(s) 80, 369, 738
BmgT120I GGNCC 2 cut(s) 332, 484
BmiI GGNNCC 1 cut(s) 395
BmrFI CCNGG 3 cut(s) 171, 494, 1277
BmsI GCATC 3 cut(s) 78, 760, 1285
BmtI GCTAGC 1 cut(s) 501
BpiI GAAGAC 1 cut(s) 1325
BplI GAGNNNNNCTC 2 cut(s) 74, 106
BpmI CTGGAG 1 cut(s) 192
Bpu1102I GCTNAGC 1 cut(s) 1387
Bpu14I TTCGAA 1 cut(s) 958
BsaJI CCNNGG 4 cut(s) 169, 253, 328, 368
BsaWI WCCGGW 1 cut(s) 1354
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 493
Bse1I ACTGG 2 cut(s) 577, 976
Bse3DI GCAATG 2 cut(s) 991, 1075
BseAI TCCGGA 1 cut(s) 1354
BseBI CCWGG 3 cut(s) 171, 494, 1277
BseDI CCNNGG 4 cut(s) 169, 253, 328, 368
BseGI GGATG 2 cut(s) 688, 1338
BseLI CCNNNNNNNGG 2 cut(s) 259, 493
BseMI GCAATG 2 cut(s) 991, 1075
BseMII CTCAG 1 cut(s) 1070
BseNI ACTGG 2 cut(s) 577, 976
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 3 cut(s) 511, 1295, 1380
BsgI GTGCAG 2 cut(s) 510, 1362
Bsh1236I CGCG 1 cut(s) 359
BshFI GGCC 3 cut(s) 327, 334, 800
BsiHKAI GWGCWC 1 cut(s) 444
BsiHKCI CYCGRG 3 cut(s) 80, 369, 738
BsiSI CCGG 2 cut(s) 34, 1355
BslI CCNNNNNNNGG 2 cut(s) 259, 493
BsmI GAATGC 3 cut(s) 196, 526, 954
BsnI GGCC 3 cut(s) 327, 334, 800
BsoBI CYCGRG 3 cut(s) 80, 369, 738
Bsp119I TTCGAA 1 cut(s) 958
Bsp1286I GDGCHC 1 cut(s) 444
Bsp13I TCCGGA 1 cut(s) 1354
Bsp1407I TGTACA 1 cut(s) 178
Bsp143I GATC 6 cut(s) 28, 133, 489, 945, 967, 1101
Bsp1720I GCTNAGC 1 cut(s) 1387
Bsp19I CCATGG 1 cut(s) 328
BspACI CCGC 3 cut(s) 5, 86, 538
BspANI GGCC 3 cut(s) 327, 334, 800
BspCNI CTCAG 1 cut(s) 1069
BspEI TCCGGA 1 cut(s) 1354
BspFNI CGCG 1 cut(s) 359
BspLI GGNNCC 1 cut(s) 395
BspMAI CTGCAG 1 cut(s) 1398
BspOI GCTAGC 1 cut(s) 501
BspPI GGATC 3 cut(s) 36, 484, 975
BspQI GCTCTTC 1 cut(s) 459
BspT104I TTCGAA 1 cut(s) 958
BsrBI CCGCTC 1 cut(s) 88
BsrDI GCAATG 2 cut(s) 991, 1075
BsrGI TGTACA 1 cut(s) 178
BsrI ACTGG 2 cut(s) 577, 976
BssECI CCNNGG 4 cut(s) 169, 253, 328, 368
BssMI GATC 6 cut(s) 28, 133, 489, 945, 967, 1101
BssT1I CCWWGG 2 cut(s) 253, 328
Bst2UI CCWGG 3 cut(s) 171, 494, 1277
Bst4CI ACNGT 6 cut(s) 117, 295, 698, 760, 997, 1108
Bst6I CTCTTC 1 cut(s) 459
BstAPI GCANNNNNTGC 2 cut(s) 521, 1289
BstAUI TGTACA 1 cut(s) 178
BstBI TTCGAA 1 cut(s) 958
BstC8I GCNNGC 4 cut(s) 219, 499, 771, 1066
BstDEI CTNAG 2 cut(s) 1056, 1387
BstDSI CCRYGG 1 cut(s) 328
BstF5I GGATG 2 cut(s) 688, 1338
BstFNI CGCG 1 cut(s) 359
BstH2I RGCGCY 1 cut(s) 1394
BstHHI GCGC 2 cut(s) 359, 1393
BstKTI GATC 6 cut(s) 31, 136, 492, 948, 970, 1104
BstMBI GATC 6 cut(s) 28, 133, 489, 945, 967, 1101
BstMWI GCNNNNNNNGC 4 cut(s) 11, 227, 521, 1289
BstNI CCWGG 3 cut(s) 171, 494, 1277
BstNSI RCATGY 3 cut(s) 349, 512, 773
BstSCI CCNGG 3 cut(s) 169, 492, 1275
BstSFI CTRYAG 2 cut(s) 1079, 1394
BstUI CGCG 1 cut(s) 359
BstV1I GCAGC 3 cut(s) 511, 1295, 1380
BstV2I GAAGAC 1 cut(s) 1325
BstX2I RGATCY 1 cut(s) 967
BstXI CCANNNNNNTGG 1 cut(s) 1205
BstYI RGATCY 1 cut(s) 967
BsuRI GGCC 3 cut(s) 327, 334, 800
BtgI CCRYGG 1 cut(s) 328
BtsCI GGATG 2 cut(s) 688, 1338
BtsIMutI CAGTG 3 cut(s) 108, 570, 1104
Cac8I GCNNGC 4 cut(s) 219, 499, 771, 1066
CfoI GCGC 2 cut(s) 359, 1393
Cfr13I GGNCC 2 cut(s) 332, 484
CseI GACGC 1 cut(s) 576
CsiI ACCWGGT 1 cut(s) 1275
Csp6I GTAC 4 cut(s) 179, 1179, 1337, 1343
CviQI GTAC 4 cut(s) 179, 1179, 1337, 1343
DdeI CTNAG 2 cut(s) 1056, 1387
DpnI GATC 6 cut(s) 30, 135, 491, 947, 969, 1103
DpnII GATC 6 cut(s) 28, 133, 489, 945, 967, 1101
DrdI GACNNNNNNGTC 2 cut(s) 431, 1247
DseDI GACNNNNNNGTC 2 cut(s) 431, 1247
EaeI YGGCCR 2 cut(s) 325, 798
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco130I CCWWGG 2 cut(s) 253, 328
Eco47I GGWCC 1 cut(s) 484
Eco47III AGCGCT 1 cut(s) 1392
Eco57I CTGAAG 4 cut(s) 158, 483, 947, 1337
Eco88I CYCGRG 3 cut(s) 80, 369, 738
EcoO109I RGGNCCY 1 cut(s) 484
EcoRI GAATTC 1 cut(s) 866
EcoRII CCWGG 3 cut(s) 169, 492, 1275
EcoT14I CCWWGG 2 cut(s) 253, 328
ErhI CCWWGG 2 cut(s) 253, 328
FalI AAGNNNNNCTT 2 cut(s) 527, 559
FauNDI CATATG 1 cut(s) 1324
FbaI TGATCA 1 cut(s) 1101
FblI GTMKAC 3 cut(s) 75, 435, 1257
Fnu4HI GCNGC 5 cut(s) 6, 86, 525, 1284, 1394
FokI GGATG 2 cut(s) 695, 1345
Fsp4HI GCNGC 5 cut(s) 6, 86, 525, 1284, 1394
FspBI CTAG 4 cut(s) 47, 186, 498, 702
GlaI GCGC 2 cut(s) 358, 1392
GluI GCNGC 5 cut(s) 6, 86, 525, 1284, 1394
GsuI CTGGAG 1 cut(s) 192
HaeII RGCGCY 1 cut(s) 1394
HaeIII GGCC 3 cut(s) 327, 334, 800
HapII CCGG 2 cut(s) 34, 1355
HgaI GACGC 1 cut(s) 576
HhaI GCGC 2 cut(s) 359, 1393
Hin6I GCGC 2 cut(s) 357, 1391
HinP1I GCGC 2 cut(s) 357, 1391
HincII GTYRAC 3 cut(s) 436, 586, 993
HindII GTYRAC 3 cut(s) 436, 586, 993
HindIII AAGCTT 1 cut(s) 1384
HinfI GANTC 7 cut(s) 458, 611, 736, 845, 884, 1152, 1194
HpaI GTTAAC 1 cut(s) 993
HpaII CCGG 2 cut(s) 34, 1355
HphI GGTGA 2 cut(s) 236, 395
Hpy166II GTNNAC 8 cut(s) 52, 64, 76, 166, 436, 586, 993, 1258
Hpy188III TCNNGA 8 cut(s) 26, 53, 131, 186, 871, 1145, 1238, 1355
Hpy8I GTNNAC 8 cut(s) 52, 64, 76, 166, 436, 586, 993, 1258
Hpy99I CGWCG 1 cut(s) 440
HpyAV CCTTC 4 cut(s) 475, 775, 922, 957
HpyCH4III ACNGT 6 cut(s) 117, 295, 698, 760, 997, 1108
HpyCH4IV ACGT 3 cut(s) 60, 607, 908
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 227, 521, 1289
HpyF3I CTNAG 2 cut(s) 1056, 1387
HpySE526I ACGT 3 cut(s) 60, 607, 908
HspAI GCGC 2 cut(s) 357, 1391
Kpn2I TCCGGA 1 cut(s) 1354
Ksp22I TGATCA 1 cut(s) 1101
KspAI GTTAAC 1 cut(s) 993
Kzo9I GATC 6 cut(s) 28, 133, 489, 945, 967, 1101
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 2 cut(s) 173, 262
Lsp1109I GCAGC 3 cut(s) 511, 1295, 1380
LweI GCATC 3 cut(s) 78, 760, 1285
MabI ACCWGGT 1 cut(s) 1275
MaeI CTAG 4 cut(s) 47, 186, 498, 702
MaeII ACGT 3 cut(s) 60, 607, 908
MaeIII GTNAC 5 cut(s) 383, 608, 692, 1072, 1214
MalI GATC 6 cut(s) 30, 135, 491, 947, 969, 1103
MbiI CCGCTC 1 cut(s) 88
MboI GATC 6 cut(s) 28, 133, 489, 945, 967, 1101
MboII GAAGA 7 cut(s) 356, 427, 476, 972, 1100, 1153, 1330
MflI RGATCY 1 cut(s) 967
MhlI GDGCHC 1 cut(s) 444
MlsI TGGCCA 1 cut(s) 327
MluNI TGGCCA 1 cut(s) 327
MlyI GAGTC 4 cut(s) 605, 730, 839, 1161
Mox20I TGGCCA 1 cut(s) 327
MroI TCCGGA 1 cut(s) 1354
MroXI GAANNNNTTC 1 cut(s) 117
MscI TGGCCA 1 cut(s) 327
MseI TTAA 2 cut(s) 992, 1110
MslI CAYNNNNRTG 2 cut(s) 381, 452
Msp20I TGGCCA 1 cut(s) 327
MspA1I CMGCKG 1 cut(s) 1315
MspI CCGG 2 cut(s) 34, 1355
MspR9I CCNGG 3 cut(s) 171, 494, 1277
Mva1269I GAATGC 3 cut(s) 196, 526, 954
MvaI CCWGG 3 cut(s) 171, 494, 1277
MvnI CGCG 1 cut(s) 359
MwoI GCNNNNNNNGC 4 cut(s) 11, 227, 521, 1289
NcoI CCATGG 1 cut(s) 328
NdeI CATATG 1 cut(s) 1324
NdeII GATC 6 cut(s) 28, 133, 489, 945, 967, 1101
NheI GCTAGC 1 cut(s) 497
NlaIV GGNNCC 1 cut(s) 395
NmuCI GTSAC 3 cut(s) 383, 608, 1214
NspI RCATGY 3 cut(s) 349, 512, 773
NspV TTCGAA 1 cut(s) 958
PaeI GCATGC 1 cut(s) 773
PaeR7I CTCGAG 1 cut(s) 80
PciI ACATGT 2 cut(s) 345, 508
PciSI GCTCTTC 1 cut(s) 459
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 613
PctI GAATGC 3 cut(s) 196, 526, 954
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 3 cut(s) 458, 884, 1194
PkrI GCNGC 5 cut(s) 7, 87, 526, 1285, 1395
PleI GAGTC 4 cut(s) 605, 730, 839, 1160
PpsI GAGTC 4 cut(s) 605, 730, 839, 1160
PpuMI RGGWCCY 1 cut(s) 484
PscI ACATGT 2 cut(s) 345, 508
Psp1406I AACGTT 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 484
Psp6I CCWGG 3 cut(s) 169, 492, 1275
PspGI CCWGG 3 cut(s) 169, 492, 1275
PspN4I GGNNCC 1 cut(s) 395
PspPI GGNCC 2 cut(s) 332, 484
PspPPI RGGWCCY 1 cut(s) 484
PspXI VCTCGAGB 1 cut(s) 80
PstI CTGCAG 1 cut(s) 1398
PsuI RGATCY 1 cut(s) 967
PvuII CAGCTG 1 cut(s) 1315
RsaI GTAC 4 cut(s) 180, 1180, 1338, 1344
RsaNI GTAC 4 cut(s) 179, 1179, 1337, 1343
RseI CAYNNNNRTG 2 cut(s) 381, 452
SalI GTCGAC 1 cut(s) 434
SapI GCTCTTC 1 cut(s) 459
SaqAI TTAA 2 cut(s) 992, 1110
SatI GCNGC 5 cut(s) 6, 86, 525, 1284, 1394
Sau3AI GATC 6 cut(s) 28, 133, 489, 945, 967, 1101
Sau96I GGNCC 2 cut(s) 332, 484
ScaI AGTACT 1 cut(s) 1180
SchI GAGTC 4 cut(s) 605, 730, 839, 1161
ScrFI CCNGG 3 cut(s) 171, 494, 1277
SduI GDGCHC 1 cut(s) 444
SexAI ACCWGGT 1 cut(s) 1275
SfaNI GCATC 3 cut(s) 78, 760, 1285
SfcI CTRYAG 2 cut(s) 1079, 1394
Sfr274I CTCGAG 1 cut(s) 80
SfuI TTCGAA 1 cut(s) 958
SinI GGWCC 1 cut(s) 484
SlaI CTCGAG 1 cut(s) 80
SmiMI CAYNNNNRTG 2 cut(s) 381, 452
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SphI GCATGC 1 cut(s) 773
SsiI CCGC 3 cut(s) 5, 86, 538
SspMI CTAG 4 cut(s) 47, 186, 498, 702
StyD4I CCNGG 3 cut(s) 169, 492, 1275
StyI CCWWGG 2 cut(s) 253, 328
TaaI ACNGT 6 cut(s) 117, 295, 698, 760, 997, 1108
TaiI ACGT 3 cut(s) 63, 610, 911
TaqI TCGA 3 cut(s) 81, 435, 958
TatI WGTACW 3 cut(s) 178, 1178, 1342
TauI GCSGC 2 cut(s) 8, 88
TfiI GAWTC 3 cut(s) 458, 884, 1194
Tru1I TTAA 2 cut(s) 992, 1110
Tru9I TTAA 2 cut(s) 992, 1110
TscAI CASTG 3 cut(s) 115, 577, 1111
TseFI GTSAC 3 cut(s) 383, 608, 1214
TseI GCWGC 3 cut(s) 524, 1283, 1393
Tsp45I GTSAC 3 cut(s) 383, 608, 1214
TspDTI ATGAA 1 cut(s) 365
TspRI CASTG 3 cut(s) 115, 577, 1111
VpaK11BI GGWCC 1 cut(s) 484
XapI RAATTY 4 cut(s) 37, 97, 866, 1187
XbaI TCTAGA 1 cut(s) 185
XceI RCATGY 3 cut(s) 349, 512, 773
XcmI CCANNNNNNNNNTGG 2 cut(s) 673, 867
XhoI CTCGAG 1 cut(s) 80
XmiI GTMKAC 3 cut(s) 75, 435, 1257
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 4 cut(s) 47, 186, 498, 702
ZrmI AGTACT 1 cut(s) 1180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.