Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002219

Physical Location & Seq

Genomic Coordinates Forward (+)

26498663 .. 26504706

Gene Structure 6044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G254300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGAGAGCTACTGCGAACAATGGTGGCTATCGGGATCGGAGATCGATGAAGCATGTTCTGGACAACGTTCATGGATACATCTACCTCGACCCGCTATTCTTGCAGTTCATTGACACTGAACAGTTTCAGAGGCTTCGTGATCTCAAGCAACTTGGTCTGACACACATGGTTTACCCTGGGGCTGCACATTCTCGATTTGAGCATTCACTGGGAGTGTATTGGCTGGCTGGTGAAGCTGTCAATAAAGTTAATTTTTACCAAGGCCAGGAGCTTGGAATTGAGGAGTTTGACAGGAACACAGTAAAACTTGCTGGACTACTGCATGATATCGGCCATGGCCCTTTCAGCCACATGTTTGAGCGCGAGTTTCTTCCTCGGGTTCTTGATGGTTACGAATGGTCTCATGAGGATATGTCTCTGAAGATGATAGACTACATTGTCGACAAGCACTGTATTGATATTGATTCGGCAATCCTCAAGACTGCGAAGGAAATGATCCTTGCCAGCTCTGAACATGGGCCACAAAAAAGCATGACAGAAAAGCATTTCTTGTATGATATTGTTGCAAATGGGCGAACTGAAATAGATGTTGACAAGTTTGATTACATTGTGCGTGACTCCCGAGCATGCGGTATTGGTTCTGGTTTTCAATTTGAAAGGCTGATGGAAACTATGAGAGTGATGGATGATGAGATATGTTATCGCGCTAATGAGTATCTGACACTCCACAAGCTATTTGCCACTCGTGCTGATCTTCATCGGACTGTGTACACACATCCAAAAGTGAAGGCTATTGAACTCATGGTTGTTGATGCTCTGTGCTATGCAAATGCTGATCTTGGCATTGCAGCTTCAATTCAAAAACCATCTGAATTTTGGAAGTTGGATGACTCAATTTTGAAATGGATCGAAACCTCCGATTCTGATAGCCCTAGCCTCAAGGAAGCTAAAAATTTAATCCAACGCATCCGTAAAAGGGATCTGTACCAGTACTGCAATCAGTTTTCTGTTCCAAAGGACAAGCTAGAGAATTTCAAAGACATCACACCCCAAGATATAATTTGTTCACAGGTTCAAAATAAATCTGGTGGTGTTACACTGAAGGAAGAAGATGTTGCTGTGAGCACTGTCAAAATTGATTTGACTCATGGAAGGATGAACCCTCTTGAACGAATCAATTTTTTCAAGGATTATGATAGCTCTGAGAAATTTCGAATCCCAGATGATCGCATAAGTCACTTACTTCCCAGATTTTTCCAAGATAGGATAGTGAGGGTGTACGCAAAGAAGCCGGAACTGGTGGAAGCAGTTGCTGAGGCCTTTGAGAACTATCAGGTGAAGACATATGGATGTAAAGCCCAGGTACATGCAACTCCTGATAAAAAGAAGGCACGCAAACAACTGGAATATCAATATCAAACTGACCGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

478

Amino Acids

55.41

Weight (kDa)

6.33

Isoelectric Point (pI)

26.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40270 AT5G40270 AT5G40290
fragaria_vesca	FvH4_4g34540 FvH4_4g34540 FvH4_6g50610 FvH4_6g50610 FvH4_6g50610
malus_domestica	MD09G1034800.v1.1 MD16G1092000.v1.1
prunus_persica	Prupe.1G254300_v2.0.a1 Prupe.1G254300_v2.0.a1 Prupe.1G254300_v2.0.a1 Prupe.3G283700_v2.0.a1 Prupe.3G283700_v2.0.a1 Prupe.3G283700_v2.0.a1
pyrus_communis	pycom111g02770 pycom16g07850
rosa_chinensis	RchiOBHm_Chr2g0171401 RchiOBHm_Chr4g0443921
rosa_laevigata	RLG00000005877 RLG00000022010
rosa_multiflora	Rmu_co8513743.1_g000001 Rmu_sc0007646.1_g000008 Rmu_sc0030144.1_g000004
rosa_roxburghii	Rroxscaffold_2G00080690 Rroxscaffold_5G00384470
rosa_rugosa	Rorug02G0553800 Rorug02G0553800 Rorug04G0348200 Rorug04G0348200 Rorug04G0348200
rosa_samantha	Rh2AG628200 Rh2BG638600 Rh2CG607300 Rh2DG649600 Rh2DG655700 Rh4AG408800 Rh4BG419900 Rh4CG433900 Rh4DG414900
rosa_wichuraiana	Rw2G052030 Rw4G035110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	2 cut(s)	363, 705
AciI	CCGC	2 cut(s)	92, 630
AclI	AACGTT	1 cut(s)	66
AclWI	GGATC	4 cut(s)	42, 490, 914, 987
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	4 cut(s)	872, 952, 1030, 1208
AcuI	CTGAAG	2 cut(s)	440, 1121
AfaI	GTAC	5 cut(s)	770, 986, 992, 1280, 1365
AfiI	CCNNNNNNNGG	2 cut(s)	265, 976
AflIII	ACRYGT	1 cut(s)	351
AjnI	CCWGG	3 cut(s)	175, 264, 1359
AluBI	AGCT	9 cut(s)	8, 236, 271, 507, 733, 851, 947, 1024, 1200
AluI	AGCT	9 cut(s)	8, 236, 271, 507, 733, 851, 947, 1024, 1200
Alw21I	GWGCWC	1 cut(s)	1127
Alw26I	GTCTC	2 cut(s)	405, 420
AlwI	GGATC	4 cut(s)	42, 490, 914, 987
AlwNI	CAGNNNCTG	1 cut(s)	1313
Ama87I	CYCGRG	2 cut(s)	375, 621
AoxI	GGCC	5 cut(s)	262, 331, 337, 518, 1317
ApeKI	GCWGC	2 cut(s)	182, 848
ApoI	RAATTY	4 cut(s)	872, 952, 1030, 1208
ArsI	GACNNNNNNTTYG	1 cut(s)	1411
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	2 cut(s)	363, 707
AspS9I	GGNCC	2 cut(s)	338, 518
AsuHPI	GGTGA	2 cut(s)	242, 1348
AsuII	TTCGAA	1 cut(s)	1213
AvaI	CYCGRG	2 cut(s)	375, 621
BauI	CACGAG	1 cut(s)	744
BbsI	GAAGAC	1 cut(s)	1346
Bbv12I	GWGCWC	1 cut(s)	1127
BbvCI	CCTCAGC	1 cut(s)	1314
BbvI	GCAGC	2 cut(s)	169, 860
BccI	CCATC	4 cut(s)	380, 658, 676, 874
BciT130I	CCWGG	3 cut(s)	177, 266, 1361
BciVI	GTATCC	1 cut(s)	68
BcoDI	GTCTC	2 cut(s)	405, 420
BfaI	CTAG	2 cut(s)	933, 1025
BfuI	GTATCC	1 cut(s)	68
BisI	GCNGC	2 cut(s)	183, 849
BlsI	GCNGC	2 cut(s)	184, 850
BmcAI	AGTACT	1 cut(s)	992
Bme1390I	CCNGG	3 cut(s)	177, 266, 1361
BmeT110I	CYCGRG	2 cut(s)	375, 621
BmgT120I	GGNCC	2 cut(s)	338, 518
BmrFI	CCNGG	3 cut(s)	177, 266, 1361
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	2 cut(s)	802, 975
BmuI	ACTGGG	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	1346
Bpu10I	CCTNAGC	1 cut(s)	1314
Bpu14I	TTCGAA	1 cut(s)	1213
BpuEI	CTTGAG	3 cut(s)	128, 461, 923
Bsa29I	ATCGAT	1 cut(s)	44
BsaBI	GATNNNNATC	1 cut(s)	756
BsaI	GGTCTC	1 cut(s)	405
BsaJI	CCNNGG	6 cut(s)	175, 176, 259, 334, 374, 1359
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 976
Bse1I	ACTGG	4 cut(s)	213, 988, 1302, 1407
Bse3DI	GCAATG	1 cut(s)	843
Bse8I	GATNNNNATC	1 cut(s)	756
BseBI	CCWGG	3 cut(s)	177, 266, 1361
BseCI	ATCGAT	1 cut(s)	44
BseDI	CCNNGG	6 cut(s)	175, 176, 259, 334, 374, 1359
BseGI	GGATG	6 cut(s)	691, 775, 892, 966, 1161, 1355
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	2 cut(s)	265, 976
BseMI	GCAATG	1 cut(s)	843
BseMII	CTCAG	2 cut(s)	1194, 1305
BseNI	ACTGG	4 cut(s)	213, 988, 1302, 1407
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	2 cut(s)	169, 860
BsgI	GTGCAG	1 cut(s)	168
Bsh1236I	CGCG	2 cut(s)	363, 705
BshFI	GGCC	5 cut(s)	264, 333, 339, 520, 1319
BshVI	ATCGAT	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	1127
BsiHKCI	CYCGRG	2 cut(s)	375, 621
BsiSI	CCGG	1 cut(s)	1292
BslI	CCNNNNNNNGG	2 cut(s)	265, 976
BsmAI	GTCTC	2 cut(s)	405, 420
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	5 cut(s)	264, 333, 339, 520, 1319
Bso31I	GGTCTC	1 cut(s)	405
BsoBI	CYCGRG	2 cut(s)	375, 621
Bsp119I	TTCGAA	1 cut(s)	1213
Bsp1286I	GDGCHC	1 cut(s)	1127
Bsp1407I	TGTACA	1 cut(s)	768
Bsp143I	GATC	9 cut(s)	34, 41, 139, 495, 751, 835, 906, 979, 1225
Bsp19I	CCATGG	1 cut(s)	334
BspACI	CCGC	2 cut(s)	92, 630
BspANI	GGCC	5 cut(s)	264, 333, 339, 520, 1319
BspCNI	CTCAG	2 cut(s)	1195, 1306
BspDI	ATCGAT	1 cut(s)	44
BspFNI	CGCG	2 cut(s)	363, 705
BspHI	TCATGA	1 cut(s)	403
BspPI	GGATC	4 cut(s)	42, 490, 914, 987
BspT104I	TTCGAA	1 cut(s)	1213
BspTNI	GGTCTC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	843
BsrGI	TGTACA	1 cut(s)	768
BsrI	ACTGG	4 cut(s)	213, 988, 1302, 1407
BssECI	CCNNGG	6 cut(s)	175, 176, 259, 334, 374, 1359
BssMI	GATC	9 cut(s)	34, 41, 139, 495, 751, 835, 906, 979, 1225
BssSI	CACGAG	1 cut(s)	744
BssT1I	CCWWGG	2 cut(s)	259, 334
Bst2BI	CACGAG	1 cut(s)	744
Bst2UI	CCWGG	3 cut(s)	177, 266, 1361
Bst4CI	ACNGT	6 cut(s)	123, 301, 452, 766, 1129, 1427
BstAUI	TGTACA	1 cut(s)	768
BstBI	TTCGAA	1 cut(s)	1213
BstC8I	GCNNGC	4 cut(s)	225, 505, 628, 1393
BstDEI	CTNAG	2 cut(s)	1203, 1314
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	6 cut(s)	691, 775, 892, 966, 1161, 1355
BstFNI	CGCG	2 cut(s)	363, 705
BstHHI	GCGC	2 cut(s)	363, 707
BstKTI	GATC	9 cut(s)	37, 44, 142, 498, 754, 838, 909, 982, 1228
BstMAI	GTCTC	2 cut(s)	405, 420
BstMBI	GATC	9 cut(s)	34, 41, 139, 495, 751, 835, 906, 979, 1225
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 233, 345, 746
BstNI	CCWGG	3 cut(s)	177, 266, 1361
BstNSI	RCATGY	4 cut(s)	56, 355, 630, 1370
BstSCI	CCNGG	3 cut(s)	175, 264, 1359
BstUI	CGCG	2 cut(s)	363, 705
BstV1I	GCAGC	2 cut(s)	169, 860
BstV2I	GAAGAC	1 cut(s)	1346
BstX2I	RGATCY	1 cut(s)	979
BstXI	CCANNNNNNTGG	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	979
Bsu15I	ATCGAT	1 cut(s)	44
BsuI	GTATCC	1 cut(s)	68
BsuRI	GGCC	5 cut(s)	264, 333, 339, 520, 1319
BsuTUI	ATCGAT	1 cut(s)	44
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	6 cut(s)	691, 775, 892, 966, 1161, 1355
BtsIMutI	CAGTG	5 cut(s)	114, 206, 448, 1097, 1125
Cac8I	GCNNGC	4 cut(s)	225, 505, 628, 1393
CaiI	CAGNNNCTG	1 cut(s)	1313
CciI	TCATGA	1 cut(s)	403
CfoI	GCGC	2 cut(s)	363, 707
Cfr13I	GGNCC	2 cut(s)	338, 518
ClaI	ATCGAT	1 cut(s)	44
Csp6I	GTAC	5 cut(s)	769, 985, 991, 1279, 1364
CviQI	GTAC	5 cut(s)	769, 985, 991, 1279, 1364
DdeI	CTNAG	2 cut(s)	1203, 1314
DpnI	GATC	9 cut(s)	36, 43, 141, 497, 753, 837, 908, 981, 1227
DpnII	GATC	9 cut(s)	34, 41, 139, 495, 751, 835, 906, 979, 1225
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
EaeI	YGGCCR	1 cut(s)	331
Eco130I	CCWWGG	2 cut(s)	259, 334
Eco147I	AGGCCT	1 cut(s)	1319
Eco31I	GGTCTC	1 cut(s)	405
Eco32I	GATATC	1 cut(s)	328
Eco57I	CTGAAG	2 cut(s)	440, 1121
Eco88I	CYCGRG	2 cut(s)	375, 621
EcoRII	CCWGG	3 cut(s)	175, 264, 1359
EcoRV	GATATC	1 cut(s)	328
EcoT14I	CCWWGG	2 cut(s)	259, 334
ErhI	CCWWGG	2 cut(s)	259, 334
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FauI	CCCGC	1 cut(s)	99
FauNDI	CATATG	1 cut(s)	1345
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	2 cut(s)	183, 849
FokI	GGATG	6 cut(s)	698, 762, 899, 953, 1168, 1362
Fsp4HI	GCNGC	2 cut(s)	183, 849
FspBI	CTAG	2 cut(s)	933, 1025
GlaI	GCGC	2 cut(s)	362, 706
GluI	GCNGC	2 cut(s)	183, 849
HaeIII	GGCC	5 cut(s)	264, 333, 339, 520, 1319
HapII	CCGG	1 cut(s)	1292
HhaI	GCGC	2 cut(s)	363, 707
Hin6I	GCGC	2 cut(s)	361, 705
HinP1I	GCGC	2 cut(s)	361, 705
HincII	GTYRAC	2 cut(s)	442, 592
HindII	GTYRAC	2 cut(s)	442, 592
HinfI	GANTC	7 cut(s)	464, 617, 890, 920, 1144, 1173, 1215
HpaII	CCGG	1 cut(s)	1292
HphI	GGTGA	2 cut(s)	242, 1348
Hpy166II	GTNNAC	7 cut(s)	172, 442, 592, 769, 771, 1067, 1279
Hpy8I	GTNNAC	7 cut(s)	172, 442, 592, 769, 771, 1067, 1279
HpyAV	CCTTC	5 cut(s)	481, 781, 1096, 1146, 1381
HpyCH4III	ACNGT	6 cut(s)	123, 301, 452, 766, 1129, 1427
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	8 cut(s)	103, 185, 322, 566, 827, 848, 996, 1370
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 233, 345, 746
HpyF3I	CTNAG	2 cut(s)	1203, 1314
HpySE526I	ACGT	1 cut(s)	66
HspAI	GCGC	2 cut(s)	361, 705
Kzo9I	GATC	9 cut(s)	34, 41, 139, 495, 751, 835, 906, 979, 1225
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	2 cut(s)	169, 860
LweI	GCATC	2 cut(s)	802, 975
MaeI	CTAG	2 cut(s)	933, 1025
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	4 cut(s)	389, 614, 1093, 1235
MalI	GATC	9 cut(s)	36, 43, 141, 497, 753, 837, 908, 981, 1227
MboI	GATC	9 cut(s)	34, 41, 139, 495, 751, 835, 906, 979, 1225
MboII	GAAGA	6 cut(s)	362, 433, 746, 1118, 1121, 1351
MflI	RGATCY	1 cut(s)	979
MhlI	GDGCHC	1 cut(s)	1127
MlyI	GAGTC	3 cut(s)	611, 884, 1138
MmeI	TCCRAC	2 cut(s)	864, 985
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	2 cut(s)	249, 956
MslI	CAYNNNNRTG	1 cut(s)	1348
MspI	CCGG	1 cut(s)	1292
MspR9I	CCNGG	3 cut(s)	177, 266, 1361
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	3 cut(s)	177, 266, 1361
MvnI	CGCG	2 cut(s)	363, 705
MwoI	GCNNNNNNNGC	4 cut(s)	100, 233, 345, 746
NcoI	CCATGG	1 cut(s)	334
NdeI	CATATG	1 cut(s)	1345
NdeII	GATC	9 cut(s)	34, 41, 139, 495, 751, 835, 906, 979, 1225
NmuCI	GTSAC	2 cut(s)	614, 1235
NspI	RCATGY	4 cut(s)	56, 355, 630, 1370
NspV	TTCGAA	1 cut(s)	1213
PaeI	GCATGC	1 cut(s)	630
PagI	TCATGA	1 cut(s)	403
PasI	CCCWGGG	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	1319
PciI	ACATGT	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	915
PctI	GAATGC	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	4 cut(s)	464, 920, 1173, 1215
PkrI	GCNGC	2 cut(s)	184, 850
PleI	GAGTC	3 cut(s)	611, 884, 1138
PpsI	GAGTC	3 cut(s)	611, 884, 1138
PscI	ACATGT	1 cut(s)	351
Psp1406I	AACGTT	1 cut(s)	66
Psp6I	CCWGG	3 cut(s)	175, 264, 1359
PspGI	CCWGG	3 cut(s)	175, 264, 1359
PspPI	GGNCC	2 cut(s)	338, 518
PstNI	CAGNNNCTG	1 cut(s)	1313
PsuI	RGATCY	1 cut(s)	979
RsaI	GTAC	5 cut(s)	770, 986, 992, 1280, 1365
RsaNI	GTAC	5 cut(s)	769, 985, 991, 1279, 1364
RseI	CAYNNNNRTG	1 cut(s)	1348
SalI	GTCGAC	1 cut(s)	440
SaqAI	TTAA	2 cut(s)	249, 956
SatI	GCNGC	2 cut(s)	183, 849
Sau3AI	GATC	9 cut(s)	34, 41, 139, 495, 751, 835, 906, 979, 1225
Sau96I	GGNCC	2 cut(s)	338, 518
ScaI	AGTACT	1 cut(s)	992
SchI	GAGTC	3 cut(s)	611, 884, 1138
ScrFI	CCNGG	3 cut(s)	177, 266, 1361
SduI	GDGCHC	1 cut(s)	1127
SfaNI	GCATC	2 cut(s)	802, 975
SfuI	TTCGAA	1 cut(s)	1213
SmiMI	CAYNNNNRTG	1 cut(s)	1348
SmlI	CTYRAG	3 cut(s)	143, 476, 938
SmoI	CTYRAG	3 cut(s)	143, 476, 938
SphI	GCATGC	1 cut(s)	630
SseBI	AGGCCT	1 cut(s)	1319
SsiI	CCGC	2 cut(s)	92, 630
SspMI	CTAG	2 cut(s)	933, 1025
StuI	AGGCCT	1 cut(s)	1319
StyD4I	CCNGG	3 cut(s)	175, 264, 1359
StyI	CCWWGG	2 cut(s)	259, 334
TaaI	ACNGT	6 cut(s)	123, 301, 452, 766, 1129, 1427
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	6 cut(s)	44, 87, 193, 441, 909, 1213
TatI	WGTACW	2 cut(s)	768, 990
TfiI	GAWTC	4 cut(s)	464, 920, 1173, 1215
Tru1I	TTAA	2 cut(s)	249, 956
Tru9I	TTAA	2 cut(s)	249, 956
TscAI	CASTG	5 cut(s)	121, 213, 455, 1104, 1132
TseFI	GTSAC	2 cut(s)	614, 1235
TseI	GCWGC	2 cut(s)	182, 848
Tsp45I	GTSAC	2 cut(s)	614, 1235
TspDTI	ATGAA	5 cut(s)	59, 62, 97, 746, 1172
TspGWI	ACGGA	1 cut(s)	959
TspRI	CASTG	5 cut(s)	121, 213, 455, 1104, 1132
XapI	RAATTY	4 cut(s)	872, 952, 1030, 1208
XceI	RCATGY	4 cut(s)	56, 355, 630, 1370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	873
XmiI	GTMKAC	1 cut(s)	441
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	2 cut(s)	933, 1025
ZrmI	AGTACT	1 cut(s)	992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.